mRNA_Ecto-sp13_S_contig18126.5587.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18126.5587.1
Unique NamemRNA_Ecto-sp13_S_contig18126.5587.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18126.5587.1 vs. uniprot
Match: A0A6H5KVN8_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVN8_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 6.470e-57
Identity = 103/109 (94.50%), Postives = 106/109 (97.25%), Query Frame = 1 
Query:    1 QRHNLLLSTNARINAEVVATVRSVVIAIERSKLCRVLRLDTEFVLDGNDELWLVGVTSCTVAARPTISGAQELGDNGPRGASFLQEEERALATELRHRKHEADQISGVL 327
            QRHNLLLS NARINAEVVATVRSVVIAIERSK CRVLRLDTEFVLDGNDELWLVGVT CTVAARPTISGAQELGDNGP+GASFL+EEERALATELRHRKHEADQI+GVL
Sbjct:  231 QRHNLLLSKNARINAEVVATVRSVVIAIERSKHCRVLRLDTEFVLDGNDELWLVGVTCCTVAARPTISGAQELGDNGPQGASFLKEEERALATELRHRKHEADQIAGVL 339
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18126.5587.1 vs. uniprot
Match: D8LEN9_ECTSI (Membrane acyl-CoA binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN9_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 1.260e-54
Identity = 100/109 (91.74%), Postives = 103/109 (94.50%), Query Frame = 1 
Query:    1 QRHNLLLSTNARINAEVVATVRSVVIAIERSKLCRVLRLDTEFVLDGNDELWLVGVTSCTVAARPTISGAQELGDNGPRGASFLQEEERALATELRHRKHEADQISGVL 327
            QR NLLLS NARIN EVVATVRSVVIAIERSKLCRVLRLDTEFVLDGNDELWLVGVT CTVAAR TISGAQ+LGDNGP+GASFL+EEER LATELRHRKHEADQISGVL
Sbjct:  199 QRQNLLLSKNARINTEVVATVRSVVIAIERSKLCRVLRLDTEFVLDGNDELWLVGVTCCTVAARSTISGAQQLGDNGPQGASFLKEEERTLATELRHRKHEADQISGVL 307
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18126.5587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KVN8_9PHAE6.470e-5794.50SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LEN9_ECTSI1.260e-5491.74Membrane acyl-CoA binding protein n=1 Tax=Ectocarp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18126contigEcto-sp13_S_contig18126:476..803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score191.4
Seed ortholog evalue2.2e-46
Seed eggNOG ortholog2880.D8LEN9
Model size328
KEGG koko:K10408,ko:K10413
KEGG Pathwayko04145,ko04962,ko05016,ko05132,map04145,map04962,map05016,map05132
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
Cds size327
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462935.9086976-CDS-Ecto-sp13_S_contig18126:475..8021681462935.9086976-CDS-Ecto-sp13_S_contig18126:475..802Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18126 476..802 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18126.5587.1prot_Ecto-sp13_S_contig18126.5587.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18126 476..802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18126.5587.1

>prot_Ecto-sp13_S_contig18126.5587.1 ID=prot_Ecto-sp13_S_contig18126.5587.1|Name=mRNA_Ecto-sp13_S_contig18126.5587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
QRHNLLLSTNARINAEVVATVRSVVIAIERSKLCRVLRLDTEFVLDGNDE
LWLVGVTSCTVAARPTISGAQELGDNGPRGASFLQEEERALATELRHRKH
EADQISGVL
back to top

mRNA from alignment at Ecto-sp13_S_contig18126:476..803+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18126.5587.1 ID=mRNA_Ecto-sp13_S_contig18126.5587.1|Name=mRNA_Ecto-sp13_S_contig18126.5587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=328bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18126:476..803+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCGCCACAACCTCCTGTTGAGCACAAACGCGAGAATCAATGCAGAGGT
GGTAGCTACGGTGAGGTCCGTGGTGATTGCCATCGAGCGATCGAAGCTCT
GCCGTGTGCTGCGCCTCGACACCGAGTTTGTTTTGGACGGCAATGATGAG
TTGTGGCTAGTCGGGGTCACCAGCTGCACGGTCGCGGCAAGACCCACGAT
TTCTGGCGCGCAGGAACTAGGCGACAACGGCCCACGAGGGGCGAGTTTCT
TGCAAGAGGAGGAGCGCGCACTTGCCACAGAGTTGCGTCACAGGAAACAC
GAGGCCGACCAGATCTCTGGCGTTTTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18126:476..803+

>mRNA_Ecto-sp13_S_contig18126.5587.1 ID=mRNA_Ecto-sp13_S_contig18126.5587.1|Name=mRNA_Ecto-sp13_S_contig18126.5587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18126:476..803+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCGCCACAACCTCCTGTTGAGCACAAACGCGAGAATCAATGCAGAGGT
GGTAGCTACGGTGAGGTCCGTGGTGATTGCCATCGAGCGATCGAAGCTCT
GCCGTGTGCTGCGCCTCGACACCGAGTTTGTTTTGGACGGCAATGATGAG
TTGTGGCTAGTCGGGGTCACCAGCTGCACGGTCGCGGCAAGACCCACGAT
TTCTGGCGCGCAGGAACTAGGCGACAACGGCCCACGAGGGGCGAGTTTCT
TGCAAGAGGAGGAGCGCGCACTTGCCACAGAGTTGCGTCACAGGAAACAC
GAGGCCGACCAGATCTCTGGCGTTTTA
back to top