mRNA_Ecto-sp13_S_contig18007.5521.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18007.5521.1
Unique NamemRNA_Ecto-sp13_S_contig18007.5521.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18007.5521.1 vs. uniprot
Match: D7G4X3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X3_ECTSI)

HSP 1 Score: 224 bits (572), Expect = 1.120e-63
Identity = 122/197 (61.93%), Postives = 154/197 (78.17%), Query Frame = 1 
Query:    4 ISNVQFNANGHPSSEVEAGVTSITITTSRDGEDIPLSAPVQMTMRASVATTSSSTPLCAYYNENTGRWEEDGLVAEGVT--MSTSKTAGLRDLNVTCWSFHLSDFTIIAEDIGASFEPVELTAGIGVVLKERDISNMGVLLLLLXXXXLAVVRTASRLADAQTELNRQLARKTDDFYLATGKSRRCPSLTELIKKDP 588
            I+++QF+ANG PSS+V+AGV+SITITTS  G+DI LSAPV+MTMRAS+ATT S++P C YYNE TG W+EDGLV E     M  S   GL  LNVTCWSFHLSDFTI A+++G+ F+ V+LTAGI V LK R+IS MG LLLL  XXX  ++RT +R+AD +T L++QLARKTD+ Y+ATGKSR  P+L  L++ DP
Sbjct: 1216 IASLQFSANGRPSSQVDAGVSSITITTSSGGQDIALSAPVRMTMRASMATTLSNSPSCVYYNEITGLWDEDGLVTEAAITPMDESNADGLTGLNVTCWSFHLSDFTISADEVGSGFQHVDLTAGIAVFLKVREISKMGGLLLLFVXXXXXLLRTTARMADVKTNLSKQLARKTDEVYVATGKSRNRPTLAALVQADP 1412
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BLAST of mRNA_Ecto-sp13_S_contig18007.5521.1 vs. uniprot
Match: A0A6H5JLT2_9PHAE (GPS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT2_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 2.370e-54
Identity = 104/167 (62.28%), Postives = 127/167 (76.05%), Query Frame = 1 
Query:   94 GEDIPLSAPVQMTMRASVATTSSSTPLCAYYNENTGRWEEDGLVAEGVT--MSTSKTAGLRDLNVTCWSFHLSDFTIIAEDIGASFEPVELTAGIGVVLKERDISNMGVLLLLLXXXXLAVVRTASRLADAQTELNRQLARKTDDFYLATGKSRRCPSLTELIKKDP 588
            GEDI LSAPV+MTMRAS+ATTSS +P CAYYNE TG W+EDGLV E     +  S   GL DLNVTCWSFHLSDFTI A+++G+ F+ V+LTAGI VVL+ RDIS MGVLLLL     L V+RT SR+AD +T L+++L  KTD+ YLATGKSR  P+L  L++ +P
Sbjct:  274 GEDITLSAPVRMTMRASMATTSSKSPSCAYYNELTGLWDEDGLVTEAAITPIDESNAGGLTDLNVTCWSFHLSDFTISADEVGSGFQHVDLTAGIAVVLEVRDISKMGVLLLLFVLLLLVVLRTISRMADVKTNLSKELEGKTDEVYLATGKSRNRPTLGALVQANP 440
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BLAST of mRNA_Ecto-sp13_S_contig18007.5521.1 vs. uniprot
Match: A0A6H5JM67_9PHAE (GPS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM67_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 1.430e-38
Identity = 95/256 (37.11%), Postives = 149/256 (58.20%), Query Frame = 1 
Query:    1 MISNVQFNANGHPSSEVEAGVTSITITTSRDGEDIPLSAPVQMTMRASVATTSSSTPLCAYYNENTGRWEEDGLVAEGVTMSTSKTAGLRDLNVTCWSFHLSDFTIIAEDIGASFEPVELTAGIGVVLKERDISNMGVLLLLLXXXXLAVVRTASRLADAQTELNRQLARKTDDFYLATGKSRRCPSLTELIKKDPLQSKEKEG--------------LHQQSMRRFQSLGRRIEIFLRLLLRYHPWFGIVAPSSS 726
            +++N  FNAN  PS+ V  GVT I ++++ DGEDI L+ PVQ+TMRAS+A+T+   P C YYNE TGRW+ +GL    V + T+      D+ V+C +FHLSDF +   +I   F+PV L AG+ VV + +DI+  G +L +     L +V + SR+AD +++    L  +  D Y+ TG  +R P+L ++  KD  Q+                   L +++ +RF+S  + +   L+ +L +HPW GI+APS +
Sbjct:  466 VVTNQLFNANDRPSALVNGGVTQIKVSSTSDGEDIALAGPVQLTMRASMASTAQL-PSCLYYNEETGRWDSEGLAIGAVAVPTNAGDSAVDVLVSCVTFHLSDFGVATTEIEPVFQPVTLEAGLSVV-RGKDITVWGFVLTVGALILLGIVWSVSRMADHRSKTAEMLQTRAYDHYIETGHPQRLPTLEDI--KDLRQTXXXXXXXXXXXXDESFVRYLRRKTFQRFRSWLQLMWALLKHVLFFHPWAGIIAPSGT 717
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18007.5521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G4X3_ECTSI1.120e-6361.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLT2_9PHAE2.370e-5462.28GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JM67_9PHAE1.430e-3837.11GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18007contigEcto-sp13_S_contig18007:1387..3500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score232.3
Seed ortholog evalue2.5e-58
Seed eggNOG ortholog2880.D7G4X3
Model size726
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.detection of mechanical stimulus
EggNOG OGsKOG3599@1,KOG3599@2759
Cds size726
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462931.0772078-CDS-Ecto-sp13_S_contig18007:1386..14851681462931.0772078-CDS-Ecto-sp13_S_contig18007:1386..1485Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18007 1387..1485 +
1681462931.1410902-CDS-Ecto-sp13_S_contig18007:1778..20391681462931.1410902-CDS-Ecto-sp13_S_contig18007:1778..2039Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18007 1779..2039 +
1681462931.1611364-CDS-Ecto-sp13_S_contig18007:2477..26601681462931.1611364-CDS-Ecto-sp13_S_contig18007:2477..2660Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18007 2478..2660 +
1681462931.1765964-CDS-Ecto-sp13_S_contig18007:2854..29461681462931.1765964-CDS-Ecto-sp13_S_contig18007:2854..2946Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18007 2855..2946 +
1681462931.186728-CDS-Ecto-sp13_S_contig18007:3409..35001681462931.186728-CDS-Ecto-sp13_S_contig18007:3409..3500Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18007 3410..3500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18007.5521.1prot_Ecto-sp13_S_contig18007.5521.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18007 1387..3500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18007.5521.1

>prot_Ecto-sp13_S_contig18007.5521.1 ID=prot_Ecto-sp13_S_contig18007.5521.1|Name=mRNA_Ecto-sp13_S_contig18007.5521.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=242bp
MISNVQFNANGHPSSEVEAGVTSITITTSRDGEDIPLSAPVQMTMRASVA
TTSSSTPLCAYYNENTGRWEEDGLVAEGVTMSTSKTAGLRDLNVTCWSFH
LSDFTIIAEDIGASFEPVELTAGIGVVLKERDISNMGVLLLLLVLLLLAV
VRTASRLADAQTELNRQLARKTDDFYLATGKSRRCPSLTELIKKDPLQSK
EKEGLHQQSMRRFQSLGRRIEIFLRLLLRYHPWFGIVAPSSS
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mRNA from alignment at Ecto-sp13_S_contig18007:1387..3500+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18007.5521.1 ID=mRNA_Ecto-sp13_S_contig18007.5521.1|Name=mRNA_Ecto-sp13_S_contig18007.5521.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18007:1387..3500+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTTCCAACGTACAGTTTAACGCTAATGGTCACCCATCAAGCGAAGT
AGAAGCTGGCGTCACAAGCATAACCATCACCACTTCAAGAGATGGCGAGG
TACGAAACTGCTGACAGCAGTGCATAGCAAGTATCATGGGGTTCGAGTGT
GACAAATGGCCTCCAGAGGTTAACCTGATGCCCATTTGGGAATACACAGC
ATGTCCTAAATGATCACGTTCGTCGTGCATGTCTGGGACGCTATCAGATG
GGTAGACGGAGTGCTGCCCCGATTAACACGGCCTCCGCCGCAGCGTCCTG
CTGCCAGGGTCGCAGGCACTCGTTCTGATTGTTTTCTTGCAAATCTCCTC
ACTTCCACTCGTTCATGGACTTTCAATGCCGAAACTATGCAGGATATTCC
TCTCTCGGCTCCAGTCCAAATGACTATGAGGGCCTCAGTGGCGACAACGT
CATCTAGCACCCCATTGTGCGCGTACTACAACGAGAACACCGGGCGCTGG
GAGGAGGATGGGCTGGTTGCTGAGGGCGTCACCATGTCAACGAGCAAGAC
AGCTGGACTGAGGGATTTGAACGTTACCTGTTGGTCGTTTCACTTGTCGG
ACTTCACAATAATTGCCGAAGATATTGGCGCAAGTTTCGAGCCTGTCGAG
TTGGTGAGGATCCGATGCAGTCGGACCCCCAAGTCGTATCAACACGACGT
AAGTAATGCCGGCACTACATGTGCGGGAGAATCCACGACGGAGCGGGATC
GAGCGTGTCAATGAAGATGCAACCGATATTTTCCTTAGAATGACCACGGT
GCGGCATATTTTGTTCAATCCATCGTAACCACCCCTACCGCATGCCCACC
AAACGGAGGTAACACACGCTCATATCAGCGTTGCAGCTGTGTATCCTCGC
GCCTGTTAGAGACATGATCCTGGCGAGCTGGTGTTGGCCCTGACGCTGCA
TTATGTCAAGAACCGCCACGCACGATGCGATCGCCAGCAACGCTGTCCCC
ATATCTCAAACGTGTTACGATCCCACCGAATTTGTGCGCTCTTTTTCCGG
CGCATCATTCTCCGAACTTGCGGATTTATCAATCCCCGTAGACGGCAGGG
ATAGGCGTTGTTCTCAAAGAAAGGGACATTTCCAACATGGGTGTCCTGCT
GCTGCTCTTGGTCCTGCTCCTGCTAGCGGTCGTCCGAACCGCCTCAAGAT
TGGCGGACGCCCAAACCGAGCTGAACAGGCAGCTGGCAAGGAAGACCGAT
GATTTCTACTTGGCCACGGGGAAGGTAGCGCGTGATTGATACCCTAGAGT
TCATGATGCTGACGACTTATTCACTTGGTGCTGGTGTTGTTGAGGGCTTT
CAGGACTAAAAACGCTTACGCTGTCGCCGGCGTCTTCTACCTGCCTCATG
ACATGCGGTGCTCTCCAGCAAACGGCCGCAAAAATTCCGATTCCCTTCTT
GTGCGAACCCCGACGCAGTCCCGGAGGTGTCCCTCGTTGACAGAGTTGAT
AAAGAAGGACCCGCTACAATCGAAGGAAAAGGAAGGGCTTCACCAACAGT
CGATGCGGAGGTGAGGTCAACATTGAGATTTGTACGACGCAGGGAAGTGT
TGCTACATCAGAATCAGGATAGACGGCCATGTACCTAGCATGATGCCAAC
GCCATACAGGCATTTTGCCACCAGCCAGCAGGCTTCCTAGAAGGTGTGGA
GAGAGCCCGGTCGTCACCGCGCAAAGAAGCAGTACGACGAGCCAGAACGC
GAACGTTGAGCCTGTTGCCCTCCACGCGATGGGCACAAAGGTCCTGGCCT
GTGAAAATTCGTCCGCAGATGCAATCCTGGACGAGAAATGAGTGCTTTGT
ACGGTAAAGCGCGTGCACCATACCTATCCCAAACCCCGATCTTGGATTGT
CTGTGGAGCGAAACGACCGTCGTTTCGCTTTAGATTTACAGTATTCATGT
CCACGTTAACCTACAAAAGTCTTCTTGAGCGCGAGTCGCGATACCTTTAT
GATCTCTGTTGGATGAACGGCAGATTTCAGAGCTTGGGGCGCCGGATTGA
AATATTCCTTCGCTTGCTGCTTCGCTACCATCCTTGGTTTGGAATCGTGG
CACCTTCCTCTTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18007:1387..3500+

>mRNA_Ecto-sp13_S_contig18007.5521.1 ID=mRNA_Ecto-sp13_S_contig18007.5521.1|Name=mRNA_Ecto-sp13_S_contig18007.5521.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=726bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18007:1387..3500+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTTCCAACGTACAGTTTAACGCTAATGGTCACCCATCAAGCGAAGT
AGAAGCTGGCGTCACAAGCATAACCATCACCACTTCAAGAGATGGCGAGG
ATATTCCTCTCTCGGCTCCAGTCCAAATGACTATGAGGGCCTCAGTGGCG
ACAACGTCATCTAGCACCCCATTGTGCGCGTACTACAACGAGAACACCGG
GCGCTGGGAGGAGGATGGGCTGGTTGCTGAGGGCGTCACCATGTCAACGA
GCAAGACAGCTGGACTGAGGGATTTGAACGTTACCTGTTGGTCGTTTCAC
TTGTCGGACTTCACAATAATTGCCGAAGATATTGGCGCAAGTTTCGAGCC
TGTCGAGTTGACGGCAGGGATAGGCGTTGTTCTCAAAGAAAGGGACATTT
CCAACATGGGTGTCCTGCTGCTGCTCTTGGTCCTGCTCCTGCTAGCGGTC
GTCCGAACCGCCTCAAGATTGGCGGACGCCCAAACCGAGCTGAACAGGCA
GCTGGCAAGGAAGACCGATGATTTCTACTTGGCCACGGGGAAGTCCCGGA
GGTGTCCCTCGTTGACAGAGTTGATAAAGAAGGACCCGCTACAATCGAAG
GAAAAGGAAGGGCTTCACCAACAGTCGATGCGGAGATTTCAGAGCTTGGG
GCGCCGGATTGAAATATTCCTTCGCTTGCTGCTTCGCTACCATCCTTGGT
TTGGAATCGTGGCACCTTCCTCTTCC
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