mRNA_Ecto-sp13_S_contig17994.5507.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17994.5507.1
Unique NamemRNA_Ecto-sp13_S_contig17994.5507.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17994.5507.1 vs. uniprot
Match: D7G892_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G892_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 3.820e-17
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 QFALESTNAYSSSLSDWSALETLKEGGVLDIKVVVAEYLG 120
            QFALESTNAYSSSLSDWSALETLKEGGVLDIKVVVAEYLG
Sbjct:  118 QFALESTNAYSSSLSDWSALETLKEGGVLDIKVVVAEYLG 157
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BLAST of mRNA_Ecto-sp13_S_contig17994.5507.1 vs. uniprot
Match: A0A6H5JFL8_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL8_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.310e-15
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 QFALESTNAYSSSLSDWSALETLKEGGVLDIKVVVAEYLG 120
            QF+LESTNAYSSSLSDWSALETLKEGGVLDIKVVVAEYLG
Sbjct:  118 QFSLESTNAYSSSLSDWSALETLKEGGVLDIKVVVAEYLG 157
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17994.5507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G892_ECTSI3.820e-17100.00EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JFL8_9PHAE1.310e-1597.50CBM1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17994contigEcto-sp13_S_contig17994:3299..3430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size132
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionConserved protein
Ec32 orthologEc-00_010740.1
Cds size132
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462930.2359943-CDS-Ecto-sp13_S_contig17994:3298..34301681462930.2359943-CDS-Ecto-sp13_S_contig17994:3298..3430Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17994 3299..3430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17994.5507.1prot_Ecto-sp13_S_contig17994.5507.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17994 3299..3430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17994.5507.1

>prot_Ecto-sp13_S_contig17994.5507.1 ID=prot_Ecto-sp13_S_contig17994.5507.1|Name=mRNA_Ecto-sp13_S_contig17994.5507.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=44bp
QFALESTNAYSSSLSDWSALETLKEGGVLDIKVVVAEYLGVSC*
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mRNA from alignment at Ecto-sp13_S_contig17994:3299..3430-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17994.5507.1 ID=mRNA_Ecto-sp13_S_contig17994.5507.1|Name=mRNA_Ecto-sp13_S_contig17994.5507.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17994:3299..3430- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTTTGCCCTGGAGAGCACGAACGCCTACAGCAGCAGCCTCAGCGACTG
GTCCGCCCTGGAGACGTTGAAGGAGGGAGGGGTGTTGGACATAAAGGTCG
TCGTGGCCGAATACCTCGGGGTGAGTTGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17994:3299..3430-

>mRNA_Ecto-sp13_S_contig17994.5507.1 ID=mRNA_Ecto-sp13_S_contig17994.5507.1|Name=mRNA_Ecto-sp13_S_contig17994.5507.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17994:3299..3430- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTTTGCCCTGGAGAGCACGAACGCCTACAGCAGCAGCCTCAGCGACTG
GTCCGCCCTGGAGACGTTGAAGGAGGGAGGGGTGTTGGACATAAAGGTCG
TCGTGGCCGAATACCTCGGGGTGAGTTGTTGA
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