mRNA_Ecto-sp13_S_contig17994.5506.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17994.5506.1 vs. uniprot
Match: A0A6H5JFL8_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL8_9PHAE) HSP 1 Score: 607 bits (1564), Expect = 3.200e-214 Identity = 330/387 (85.27%), Postives = 334/387 (86.30%), Query Frame = 1
Query: 1 GHLEFFICNSADLRYGPTSKLNQECFNMNPLTRAEGDDVNSPIDPAFPGRYYVNPPCHVTEHPEALPDGAQDGYVINMQYQLPEGLTCDHCVLQMVHYTGNTCKHVGYDDFEPESWPSQCAPTKAEWINTDHWMCGMAGAYPEEHWSCSDISITTDGPTEESPSPVESXXXXXXXXXXXXXXXXXTEALGADEGGGDXXXXXXXXXXXXXXDGGYDYDEVCLTCERASLYMTPADWATLEDEGLELVCDPDCLMDEALDGCAAFGLGTACRTIPLVVEPVSPGTPAPAREXXXXXXXXXXXXXXXXXXXXXXXXTPSPVAMMMPSHSDGGRSDDSXXXXXXXXXXXXG------NKACAKFNEQCGGQHYTGTTCCEAGLTCKHWTD 1143
GHLEFFICNSADLRYGPTSK NQECFNMNPLTRAEGDDVNSPIDPA+PGRYYVNPPCH TEHPEALPDGAQDGYVINMQYQLPEGLTCDHCVLQMVHYTGNTCKHVGYDDFEPESWPSQCAPTKAEWINTDHWMCGMAGAYPEEHWSCSDISITTDGPTE+S SPVE TEALGA+EGGGDXXXXXXXXXXXXXXDGGYDYDEVCLTCERA LYMTPADWATLEDEGLELVCDPDCLMDEALDGCAAFGLGTACRTIPLVVEPVS GTPAP XXXXXXXXXXXXX TPSPVAMMMPSHS G SDDS XXXXXXX N+ACAKFNEQCGGQHYTGTTCCEAGLTCK WTD
Sbjct: 158 GHLEFFICNSADLRYGPTSKPNQECFNMNPLTRAEGDDVNSPIDPAYPGRYYVNPPCHATEHPEALPDGAQDGYVINMQYQLPEGLTCDHCVLQMVHYTGNTCKHVGYDDFEPESWPSQCAPTKAEWINTDHWMCGMAGAYPEEHWSCSDISITTDGPTEKSSSPVEPDTPPPLSTATPVATPSPTEALGANEGGGDXXXXXXXXXXXXXXDGGYDYDEVCLTCERAPLYMTPADWATLEDEGLELVCDPDCLMDEALDGCAAFGLGTACRTIPLVVEPVSSGTPAPXXXXXXXXXXXXXXXXRLG--------TPSPVAMMMPSHSHGDDSDDSYSGSSXXXXXXXXXSDDSRNEACAKFNEQCGGQHYTGTTCCEAGLTCKEWTD 536
BLAST of mRNA_Ecto-sp13_S_contig17994.5506.1 vs. uniprot
Match: D7G832_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G832_ECTSI) HSP 1 Score: 517 bits (1331), Expect = 1.480e-182 Identity = 264/354 (74.58%), Postives = 268/354 (75.71%), Query Frame = 1
Query: 82 MNPLTRAEGDDVNSPIDPAFPGRYYVNPPCHVTEHPEALPDGAQDGYVINMQYQLPEGLTCDHCVLQMVHYTGNTCKHVGYDDFEPESWPSQCAPTKAEWINTDHWMCGMAGAYPEEHWSCSDISITTDGPTEESPSPVESXXXXXXXXXXXXXXXXXTEALGADEGGGDXXXXXXXXXXXXXXDGGYDYDEVCLTCERASLYMTPADWATLEDEGLELVCDPDCLMDEALDGCAAFGLGTACRTIPLVVEPVSPGTPAPAREXXXXXXXXXXXXXXXXXXXXXXXXTPSPVAMMMPSHSDGGRSDDSXXXXXXXXXXXXGNKACAKFNEQCGGQHYTGTTCCEAGLTCKHWTD 1143
MNPLTRAEGDDVNSPIDPA+PGRYYVNPPCHVTEHPEALPDGAQ+GYVINMQYQLPEGLTCDHCVLQMVHYTGNTCKHVGYDDFEPESWPSQCAPTKAEWINTDHWMCGMAGAYPEEHWSCSDISITTDGPTEESPSPVE TEAL A+EGGG XXXXXXXXXXX DGGYDYDEVCLTCERASLYMTPADWATLEDEGLELVCDPDCLMDEAL+GCAAFGLGTACRTIPLVVEPV PGTPAP E ACAKFNEQCGGQHYTGTTCCEAGLTCKHWTD
Sbjct: 1 MNPLTRAEGDDVNSPIDPAYPGRYYVNPPCHVTEHPEALPDGAQEGYVINMQYQLPEGLTCDHCVLQMVHYTGNTCKHVGYDDFEPESWPSQCAPTKAEWINTDHWMCGMAGAYPEEHWSCSDISITTDGPTEESPSPVEPDTPPPVSTATPAATPAPTEALVANEGGGXXXXXXXXXXXXESDDGGYDYDEVCLTCERASLYMTPADWATLEDEGLELVCDPDCLMDEALEGCAAFGLGTACRTIPLVVEPVFPGTPAPVGE------------------------------------------------------------ACAKFNEQCGGQHYTGTTCCEAGLTCKHWTD 294
BLAST of mRNA_Ecto-sp13_S_contig17994.5506.1 vs. uniprot
Match: D7G4D7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D7_ECTSI) HSP 1 Score: 238 bits (608), Expect = 7.020e-72 Identity = 105/167 (62.87%), Postives = 125/167 (74.85%), Query Frame = 1
Query: 1 GHLEFFICNSADLRYGPTSKLNQECFNMNPLTRAEGDDVNSPIDPAFPGRYYVNPPCHVTEHPEALPDGAQDGYVINMQYQLPEGLTCDHCVLQMVHYTGNTCKHVGYDDFEPESWPSQCAPTKAEWINTDHWMCGMAGAYPEEHWSCSDISITTDGPTEESPSPVE 501
GH+EFFICN AD P NQECFN PLTRAEGDD NSPIDP +PGRYYV+P C E + P+GAQDGYVI+ YQLPEGLTCD C+LQM +YTGN+CKHVGY++FEP SWPS CAP K +WI D ++CG G+YPEE W+C+D +IT DG +P+P E
Sbjct: 125 GHVEFFICN-ADEMEDPDGIANQECFNNYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLPEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEEFWACADFAITPDGMANPTPAPTE 290
BLAST of mRNA_Ecto-sp13_S_contig17994.5506.1 vs. uniprot
Match: D8LM92_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM92_ECTSI) HSP 1 Score: 207 bits (528), Expect = 5.130e-57 Identity = 91/166 (54.82%), Postives = 119/166 (71.69%), Query Frame = 1
Query: 1 GHLEFFICNSADLRYGPTSKLNQECFNMNPLTRAEGDDVNSPIDPAFPGRYYVNPPCHVTEHPEALPDGAQDGYVINMQYQLPEGLTCDHCVLQMVHYTGNTCKHVGYDDFEPESWPSQCAPTKAEWINTDHWMCGMAGAYPEEHWSCSDISITTDGPTEESPSPV 498
GH+E F+C++ DL GP S + Q CFN +PL R + DD NSPIDP+ GR+ ++PPC +E + + DGA G V +++LP+GLTC+ CV+QMV+YTGN+CKH GY +F PESWPS CAPTKA+WIN CG AYPEE W+C+DISIT+DG SP+ V
Sbjct: 148 GHVEMFLCDADDLPGGPDSTVTQSCFNEHPLDRVDDDDFNSPIDPSNTGRFILDPPCRASETDQEMLDGAFPGDVATARFKLPQGLTCERCVVQMVYYTGNSCKHQGYAEFNPESWPSSCAPTKADWINEVVGHCGDGDAYPEEFWNCADISITSDGDPAPSPTTV 313
BLAST of mRNA_Ecto-sp13_S_contig17994.5506.1 vs. uniprot
Match: D8LM93_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM93_ECTSI) HSP 1 Score: 199 bits (505), Expect = 5.470e-57 Identity = 85/157 (54.14%), Postives = 113/157 (71.97%), Query Frame = 1
Query: 1 GHLEFFICNSADLRYGPTSKLNQECFNMNPLTRAEGDDVNSPIDPAFPGRYYVNPPCHVTEHPEALPDGAQDGYVINMQYQLPEGLTCDHCVLQMVHYTGNTCKHVGYDDFEPESWPSQCAPTKAEWINTDHWMCGMAGAYPEEHWSCSDISITTDG 471
GH+E F+CN+A+L GP S + Q CFN +PL RA+ D+ N P DP GR+ ++PPC +E +AL DGA V +++LP+GL+C+ CV+QMV+YTGN+CKH GY +F P SWPS CAP+KA+WIN CG AYPEE W+C+DISIT+DG
Sbjct: 149 GHVEMFLCNAANLPGGPDSTVTQSCFNEHPLDRADDDEFNGPADPDNTGRFILDPPCRASETDQALLDGAYPSDVATARFKLPQGLSCERCVVQMVYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWINEVVGQCGDGDAYPEEFWNCADISITSDG 305
BLAST of mRNA_Ecto-sp13_S_contig17994.5506.1 vs. uniprot
Match: D8LMS9_ECTSI (EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LMS9_ECTSI) HSP 1 Score: 201 bits (511), Expect = 2.170e-56 Identity = 91/170 (53.53%), Postives = 118/170 (69.41%), Query Frame = 1
Query: 1 GHLEFFICNSADLRYGPTSKLNQECFNMNPLTRAEGDDVNSPIDPAFPGRYYVNPPCHVTEHPEALPDGAQDGYVINMQYQLPEGLTCDHCVLQMVHYTGNTCKHVGYDDFEPESWPSQCAPTKAEWINTDHWMCGMAGAYPEEHWSCSDISITTDGPTEES---PSPVE 501
GH EFF+CN+ D+ P QECFNM+PLTRA+ D SPIDP +PGRYYV+P C E ++ + +GY I M+Y LP+ + C+HC+LQMV+YTGNTCKH+GY++F P SWPS CAP K +WI D ++CG G YPEE W+CSD S+T+DG T P PV+
Sbjct: 154 GHCEFFVCNTDDMD-DPDGVPTQECFNMHPLTRADDDGDASPIDPNYPGRYYVDPECREEETEQS--SNSIEGYNIKMRYVLPD-IECEHCILQMVYYTGNTCKHIGYEEFNPTSWPSSCAPNKWDWIELDRYVCGTRGQYPEEFWACSDFSMTSDGSTPADAPMPDPVD 319
BLAST of mRNA_Ecto-sp13_S_contig17994.5506.1 vs. uniprot
Match: D8LMF4_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI) HSP 1 Score: 201 bits (511), Expect = 6.120e-56 Identity = 88/157 (56.05%), Postives = 112/157 (71.34%), Query Frame = 1
Query: 1 GHLEFFICNSADLRYGPTSKLNQECFNMNPLTRAEGDDVNSPIDPAFPGRYYVNPPCHVTEHPEALPDGAQDGYVINMQYQLPEGLTCDHCVLQMVHYTGNTCKHVGYDDFEPESWPSQCAPTKAEWINTDHWMCGMAGAYPEEHWSCSDISITTDG 471
GH+E F+C++ADL G S + Q CFN PL RA D+ N PIDP + GR+ ++PPC +E + L +GA G V +YQLPEG+ CD CV+QMV+YTGN+CKH GY +F PESWPS CAP+KA+WIN CG AYPEE W+C+DISIT+DG
Sbjct: 153 GHVEAFLCDTADLPEGEDSIVTQSCFNDYPLDRAIDDEFNGPIDPEYKGRFILDPPCRASETDQDLVEGAYPGDVATARYQLPEGVVCDRCVVQMVYYTGNSCKHEGYAEFNPESWPSSCAPSKADWINEVVGQCGDGDAYPEEFWNCADISITSDG 309
BLAST of mRNA_Ecto-sp13_S_contig17994.5506.1 vs. uniprot
Match: D7FZQ9_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ9_ECTSI) HSP 1 Score: 197 bits (501), Expect = 3.910e-55 Identity = 92/160 (57.50%), Postives = 109/160 (68.12%), Query Frame = 1
Query: 1 GHLEFFICNSADLRYGPTSKLNQECFNMNPLTRAEGDDVNSPIDPAFPGRYYVNPPCHVTEHP--EALPDGAQDGYVINMQYQLPEGLTCDHCVLQMVHYTGNTCKHVGYDDFEPESWPSQCAPTKAEWINTDHWMCGMAGAYPEEHWSCSDISITTDGP 474
GHLEFFICN+ + P QECFN PLTRAEGDD NSPIDP FPGRYY +P C E + P A G + M+Y LP+ + C HC+LQMV++TGNTC H+GYDDF+P SWP CA TK +W+NT CG G YPEE W+CSD SIT+DGP
Sbjct: 153 GHLEFFICNADN---DPNGIPTQECFNEYPLTRAEGDDYNSPIDPDFPGRYYCDPTCRGEEGEVDQTKPVHAISGENMKMRYVLPD-IECSHCILQMVYHTGNTCYHIGYDDFDPPSWPGDCATTKEQWVNTTVEACGQEGYYPEEFWACSDFSITSDGP 308
BLAST of mRNA_Ecto-sp13_S_contig17994.5506.1 vs. uniprot
Match: D7FP25_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP25_ECTSI) HSP 1 Score: 193 bits (491), Expect = 2.580e-54 Identity = 87/160 (54.37%), Postives = 113/160 (70.62%), Query Frame = 1
Query: 1 GHLEFFICNSADLRYGPTSKLNQECFNMNPLTRAEGDDVNSPIDPAFPGRYYVNPPCHVTEHPEALPDGAQDGYVINMQYQLPEGLTCDHCVLQMVHYTGNTCKHVGYDDFEPESWPSQCAPTKAEWINT---DHWMCGMAGAYPEEHWSCSDISITTDG 471
GH+E F+C++ DL GP S + Q CFN PL RAE D+ NSPIDP GR+ ++PPC +E + L GA G V ++QLP+G+TC+ CV+QMV+YTGN+CKH GY +F P SWPS CAP+KA+WIN H CG AYPEE W+C+D+SIT+DG
Sbjct: 97 GHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNSPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMVYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWINEIVGQH--CGDGDAYPEEFWNCADVSITSDG 254
BLAST of mRNA_Ecto-sp13_S_contig17994.5506.1 vs. uniprot
Match: A0A6H5JI36_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI36_9PHAE) HSP 1 Score: 196 bits (497), Expect = 4.850e-54 Identity = 91/171 (53.22%), Postives = 112/171 (65.50%), Query Frame = 1
Query: 1 GHLEFFICNSADLRYGPTSKLNQECFNMNPLTRAEGDDVNSPIDPAFPGRYYVNPPCHVTEHPEALPDGAQDGYVINMQYQLPEGLTCDHCVLQMVHYTGNTCKHVGYDDFEPESWPSQCAPTKAEWINTDHWMCGMAGAYPEEHWSCSDISITTD----GPTEESPSPVE 501
GHLEFFICN+ D+ P + Q CFNM+PL RA+ D SPIDP GRYY++PPC E + GA G V +Y+LP GLTC C+LQMV+YTGN CKH GYD+F+P S P CAPTK +W+ T MCG G YPEE W+C+DI IT+D GP +PSP +
Sbjct: 214 GHLEFFICNAEDMS-DPDGVVTQGCFNMHPLDRADDDGDASPIDPDHIGRYYLDPPCRAGETDQDTLPGAYPGDVATARYKLPSGLTCSRCILQMVYYTGNACKHPGYDEFDPVSVPDGCAPTKEDWVQTQLGMCGEDGRYPEEFWNCADIEITSDEDGGGPAPTTPSPTD 383 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17994.5506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17994.5506.1 >prot_Ecto-sp13_S_contig17994.5506.1 ID=prot_Ecto-sp13_S_contig17994.5506.1|Name=mRNA_Ecto-sp13_S_contig17994.5506.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=381bp GHLEFFICNSADLRYGPTSKLNQECFNMNPLTRAEGDDVNSPIDPAFPGRback to top mRNA from alignment at Ecto-sp13_S_contig17994:423..2682- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17994.5506.1 ID=mRNA_Ecto-sp13_S_contig17994.5506.1|Name=mRNA_Ecto-sp13_S_contig17994.5506.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2260bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17994:423..2682- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17994:423..2682- >mRNA_Ecto-sp13_S_contig17994.5506.1 ID=mRNA_Ecto-sp13_S_contig17994.5506.1|Name=mRNA_Ecto-sp13_S_contig17994.5506.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1143bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17994:423..2682- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |