mRNA_Ecto-sp13_S_contig17980.5498.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17980.5498.1
Unique NamemRNA_Ecto-sp13_S_contig17980.5498.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17980.5498.1 vs. uniprot
Match: D7FT19_ECTSI (ELM2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT19_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 2.590e-34
Identity = 64/80 (80.00%), Postives = 65/80 (81.25%), Query Frame = 1 
Query:    1 MGAPEERPPVRAKQYKRYLAPHADAHINVGPEYQAAIPALEPSVAFIPPTPPRLSEQGTAEASXXXXXXXXXXXASEMDE 240
            M   EERPPVRAKQYKRYLAPHA+AHINVGPEYQAAIPALEPSVAFIPPTPPRLSEQ TAEAS           ASEMDE
Sbjct:    1 MDVSEERPPVRAKQYKRYLAPHANAHINVGPEYQAAIPALEPSVAFIPPTPPRLSEQRTAEASAAAA-------ASEMDE 73
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17980.5498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT19_ECTSI2.590e-3480.00ELM2 domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17980contigEcto-sp13_S_contig17980:2977..3527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size243
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_002440.1
Cds size243
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462929.7409198-CDS-Ecto-sp13_S_contig17980:2976..30191681462929.7409198-CDS-Ecto-sp13_S_contig17980:2976..3019Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17980 2977..3019 +
1681462929.7502909-CDS-Ecto-sp13_S_contig17980:3327..35271681462929.7502909-CDS-Ecto-sp13_S_contig17980:3327..3527Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17980 3328..3527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17980.5498.1prot_Ecto-sp13_S_contig17980.5498.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17980 2977..3527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17980.5498.1

>prot_Ecto-sp13_S_contig17980.5498.1 ID=prot_Ecto-sp13_S_contig17980.5498.1|Name=mRNA_Ecto-sp13_S_contig17980.5498.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
MGAPEERPPVRAKQYKRYLAPHADAHINVGPEYQAAIPALEPSVAFIPPT
PPRLSEQGTAEASAAASAAAAAVAASEMDE*
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mRNA from alignment at Ecto-sp13_S_contig17980:2977..3527+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17980.5498.1 ID=mRNA_Ecto-sp13_S_contig17980.5498.1|Name=mRNA_Ecto-sp13_S_contig17980.5498.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=551bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17980:2977..3527+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTGCTCCCGAGGAAAGGCCTCCGGTCAGGGCAAAGCAATGTGAGTC
ATGTTCGCCCTCGTACTTACTCTGTGTACATGTTGAGGCGGGAGGAGGGG
AAAGCGTGCAGCTTCACACTTCACACACACACCTCCGTATGTTCAACCTT
GTGTGTTCTCACCAAATGTTTCCGACAGCTTCCCAACGCCGGAGAGAATT
CCGTACCCCACTTGCCCTCCATTATTCGCGCTCCGACCCCGGCGATCCTT
TGCCAGATGGCGCAGAAATCAGCAGCTGCAAGACTGGGTGATACGCTTCC
TACTTGACCAAATGTCCGTCCGTGTTGTCCGTTGTTGTTCCTCTTGTGCA
GACAAGCGTTATTTGGCCCCGCACGCAGATGCTCACATTAACGTTGGCCC
GGAGTATCAGGCGGCCATCCCGGCGCTCGAGCCGAGCGTTGCGTTTATTC
CGCCAACACCACCAAGATTAAGCGAACAAGGAACCGCGGAGGCCTCCGCC
GCGGCCTCCGCCGCGGCCGCTGCCGTCGCCGCCTCCGAAATGGACGAATG
A
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17980:2977..3527+

>mRNA_Ecto-sp13_S_contig17980.5498.1 ID=mRNA_Ecto-sp13_S_contig17980.5498.1|Name=mRNA_Ecto-sp13_S_contig17980.5498.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17980:2977..3527+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTGCTCCCGAGGAAAGGCCTCCGGTCAGGGCAAAGCAATACAAGCG
TTATTTGGCCCCGCACGCAGATGCTCACATTAACGTTGGCCCGGAGTATC
AGGCGGCCATCCCGGCGCTCGAGCCGAGCGTTGCGTTTATTCCGCCAACA
CCACCAAGATTAAGCGAACAAGGAACCGCGGAGGCCTCCGCCGCGGCCTC
CGCCGCGGCCGCTGCCGTCGCCGCCTCCGAAATGGACGAATGA
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