mRNA_Ecto-sp13_S_contig17960.5488.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17960.5488.1
Unique NamemRNA_Ecto-sp13_S_contig17960.5488.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17960.5488.1 vs. uniprot
Match: A0A7S3W4E8_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3W4E8_EMIHU)

HSP 1 Score: 52.0 bits (123), Expect = 5.580e-5
Identity = 37/103 (35.92%), Postives = 57/103 (55.34%), Query Frame = 1 
Query:  115 EVERISAERDKLMDIGNSLRAELNRALSNSFEKHGDRNSATDAPVAAPEVEERTAERVKEAVSRAQRDTRRKYRARVSEVEAAFAQLAGDNRRLKARLAQLTT 423
            +V R++ ER+KLM+I N LRA+LNRA+++             +P A+ +  E  AER       A R+   +Y A++ E+E A  +L   NR LKA L + T+
Sbjct:    3 DVARLAEEREKLMEISNMLRADLNRAMADGA-----------SPAASRDAAEAAAER-------ATREVGAQYEAKLGEIEGAMRELISQNRALKAELRRWTS 87
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17960.5488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3W4E8_EMIHU5.580e-535.92Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17960contigEcto-sp13_S_contig17960:967..3065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size740
Hectar predicted targeting categoryother localisation
Exons4
Cds size738
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462928.9525476-CDS-Ecto-sp13_S_contig17960:968..13171681462928.9525476-CDS-Ecto-sp13_S_contig17960:968..1317Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17960 969..1317 -
1681462928.9632502-CDS-Ecto-sp13_S_contig17960:1760..19391681462928.9632502-CDS-Ecto-sp13_S_contig17960:1760..1939Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17960 1761..1939 -
1681462928.9732733-CDS-Ecto-sp13_S_contig17960:2285..24051681462928.9732733-CDS-Ecto-sp13_S_contig17960:2285..2405Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17960 2286..2405 -
1681462928.9830654-CDS-Ecto-sp13_S_contig17960:2975..30651681462928.9830654-CDS-Ecto-sp13_S_contig17960:2975..3065Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17960 2976..3065 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17960.5488.1prot_Ecto-sp13_S_contig17960.5488.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17960 969..3065 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17960.5488.1

>prot_Ecto-sp13_S_contig17960.5488.1 ID=prot_Ecto-sp13_S_contig17960.5488.1|Name=mRNA_Ecto-sp13_S_contig17960.5488.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=246bp
REELSELRGRVEHAEGPAVMELEEEVSRLQKRCDGLREEVERISAERDKL
MDIGNSLRAELNRALSNSFEKHGDRNSATDAPVAAPEVEERTAERVKEAV
SRAQRDTRRKYRARVSEVEAAFAQLAGDNRRLKARLAQLTTAGGSGSGGS
GGESPPRRRYSGDEYGGERRQAGRRRSRPGREEPSRTKVSLPASSSAVSY
PYSSTPAAAGLAVSGSTAAGRGGAARREGRNDMGTTAGGRQRTTAG
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mRNA from alignment at Ecto-sp13_S_contig17960:967..3065-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17960.5488.1 ID=mRNA_Ecto-sp13_S_contig17960.5488.1|Name=mRNA_Ecto-sp13_S_contig17960.5488.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2099bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17960:967..3065- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGAAGAATTGTCCGAGTTGAGGGGACGCGTGGAGCACGCAGAGGGGCC
AGCGGTCATGGAGCTGGAAGAGGAGGTGTCCCGATTGCAGGTGGAAGACG
AGACGAGATCGTTTAAAAACAGCGTGATTGTATGGTTGCGAATAGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGATGGTGATACTTTTGCTCTGTCTCC
TTCTCCTTTGTTATCGCAGTGTCCAAGCACCGCCAGCTTTAGTGTTCCTC
TCCGTTCTCCGTCTCTCTCAATCATTCTCGCTCTCGCTCTGTTTCCTCTC
CCTCGCGCTTTCTCACACATCCTCTCCCTGTGTCATCGTGCTTCCTTCCG
TCCGTCTCTCCTCTCCTCCGCTCCCCTTCCTCTCTCCCTCTCTCATTCTC
ACGTGTATTTTATCAAAGATGCGCATCTCATCCATCTCTTGCCTCTCTGT
CGCTGGCCGACGTCGCCCCCACTCCCCCCCCCCCCCCCCCCCCCAAAACA
CAAAACCCCACACCGGGGGAACCTAGGAGGGAGAGGGGGGGAGAAGCNNN
NNNNNNNTTTTTTTTTTTAAAAATTCGCCCTTCATCCTTTCTTTTCCCTT
TTTTCCCTGGCCCGCGGTGCCCCCCCCCCCCCCCCCCCCCCCAATACATA
ATAACAACAGAAGCGGTGCGACGGGCTTAGGGAGGAAGTGGAGAGGATCT
CGGCCGAACGAGACAAGCTGATGGACATCGGAAACAGCCTCAGGGCGGAG
CTGAACCGAGCCCTCTCCAACAGCTTCGAGGTGCAAGGCTTGTTTGCTTT
TGCGAAAAGCACGTGTTATTGAGAATCAGAATTGAGAGGGAACCGAAGCA
ATACAACAGGCGCTGTCGCTCCTGCTTCCGCCTCCACCCCCCAGTCTTAA
AGAAGCATCAATACTACACCAGAAAAACAGACGCCGCTTCCGCTGCCCCC
CCCCCCGCCCTCCCCCACCGTACTACATAAGTACAAATACTAAGCCAGAG
AAAAACAGACGCCGCTGTCGCTGCTCCCCCACACGTACACACACCGTGCC
AACAGATGCACGTAATACCAAACCAGCATGACGGACGCCGTCGCTGCCCC
CCCTCCCCCCACACACCGTACAATAGAAGCACGGAGACCGAAATAGCGCA
ACAGACGCCCCGGTAGCGGCACCGGAGGTGGAAGAGCGTACGGCGGAAAG
GGTTAAAGAGGCAGTCTCGCGAGCGCAGAGAGATACGCGCCGCAAGTACC
GTGCCAGGGTTTCCGAAGTGGAGGCGGCGTTTGCACAGCTCGCTGGGGAC
AACAGGTGACGGGAGAGGATGCATTTTTTTGTTCTCCCCTTTGCGCGATC
GTTGTGATTGGTGTTCGTTTGTATTTCGTTCATCACATCTGATGTTTGCA
TGCTGTAGGCTTCAGTGTTGTTTTATTTTCCTCCATCAGATCTTATGTCC
GCAGCTTAAGGCTACAGTATTGTTTTCGTTGTCTTCATGCTATCTGATGT
CTGCATGCGGTAGGCTACACTGTTGTTTTCTTTTTCTTGATGAGATCCCA
TGTCTCCTTGCTGTAGGATAAATTTGGTTTGTCTTCGATGTATTCGTTCT
CTCGGCGGTTTCCCCGCTGTACCGCTGCATCTTAATTTTTGTTGTTTGGT
GTGTTTGTTCGTTCACGCCACCTTTTTACCCCCTGCCGTCGGCTAGTCGG
TTTTGATTGGTCAATTCAACTTCATTCAGCTTTTGTCGATTCACGCAGGA
GGCTCAAGGCGAGATTGGCGCAGCTGACAACGGCCGGCGGCAGCGGAAGC
GGCGGCAGCGGCGGGGAGTCACCACCGAGGAGGCGTTATTCTGGGGACGA
GTATGGCGGCGAGCGGCGACAAGCGGGCCGGCGACGGTCACGACCGGGGC
GAGAAGAGCCATCGAGGACGAAGGTCTCCCTTCCTGCGTCGTCGTCTGCT
GTCTCGTACCCCTATTCGTCTACGCCTGCGGCTGCTGGCCTAGCGGTTTC
GGGAAGTACCGCCGCTGGGCGAGGTGGTGCTGCTAGGCGCGAAGGCCGCA
ACGATATGGGGACAACAGCGGGGGGGAGGCAAAGAACTACGGCGGGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17960:967..3065-

>mRNA_Ecto-sp13_S_contig17960.5488.1 ID=mRNA_Ecto-sp13_S_contig17960.5488.1|Name=mRNA_Ecto-sp13_S_contig17960.5488.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=738bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17960:967..3065- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGAAGAATTGTCCGAGTTGAGGGGACGCGTGGAGCACGCAGAGGGGCC
AGCGGTCATGGAGCTGGAAGAGGAGGTGTCCCGATTGCAGAAGCGGTGCG
ACGGGCTTAGGGAGGAAGTGGAGAGGATCTCGGCCGAACGAGACAAGCTG
ATGGACATCGGAAACAGCCTCAGGGCGGAGCTGAACCGAGCCCTCTCCAA
CAGCTTCGAGAAGCACGGAGACCGAAATAGCGCAACAGACGCCCCGGTAG
CGGCACCGGAGGTGGAAGAGCGTACGGCGGAAAGGGTTAAAGAGGCAGTC
TCGCGAGCGCAGAGAGATACGCGCCGCAAGTACCGTGCCAGGGTTTCCGA
AGTGGAGGCGGCGTTTGCACAGCTCGCTGGGGACAACAGGAGGCTCAAGG
CGAGATTGGCGCAGCTGACAACGGCCGGCGGCAGCGGAAGCGGCGGCAGC
GGCGGGGAGTCACCACCGAGGAGGCGTTATTCTGGGGACGAGTATGGCGG
CGAGCGGCGACAAGCGGGCCGGCGACGGTCACGACCGGGGCGAGAAGAGC
CATCGAGGACGAAGGTCTCCCTTCCTGCGTCGTCGTCTGCTGTCTCGTAC
CCCTATTCGTCTACGCCTGCGGCTGCTGGCCTAGCGGTTTCGGGAAGTAC
CGCCGCTGGGCGAGGTGGTGCTGCTAGGCGCGAAGGCCGCAACGATATGG
GGACAACAGCGGGGGGGAGGCAAAGAACTACGGCGGGG
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