mRNA_Ecto-sp13_S_contig17941.5475.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17941.5475.1
Unique NamemRNA_Ecto-sp13_S_contig17941.5475.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17941.5475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17941contigEcto-sp13_S_contig17941:1405..2747 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size327
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-19_004620.1
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462928.3369796-CDS-Ecto-sp13_S_contig17941:1404..16171681462928.3369796-CDS-Ecto-sp13_S_contig17941:1404..1617Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17941 1405..1617 -
1681462928.3460517-CDS-Ecto-sp13_S_contig17941:2633..27471681462928.3460517-CDS-Ecto-sp13_S_contig17941:2633..2747Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17941 2634..2747 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17941.5475.1prot_Ecto-sp13_S_contig17941.5475.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17941 1405..2747 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17941.5475.1

>prot_Ecto-sp13_S_contig17941.5475.1 ID=prot_Ecto-sp13_S_contig17941.5475.1|Name=mRNA_Ecto-sp13_S_contig17941.5475.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
MFGRASCVLKNARFVFGWVELAVSVVALCHAVHHVRRQQITFHAQNAWAA
TSTNERCRRQMHIVPISVGAVHICFFSLVLRDVLWWAFVVMIVGQIPVSI
GIFVSTLRM
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mRNA from alignment at Ecto-sp13_S_contig17941:1405..2747-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17941.5475.1 ID=mRNA_Ecto-sp13_S_contig17941.5475.1|Name=mRNA_Ecto-sp13_S_contig17941.5475.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1343bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17941:1405..2747- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGGGCGCGCCTCGTGTGTTCTTAAGAACGCCCGTTTCGTTTTCGG
TTGGGTCGAGTTGGCGGTTTCCGTGGTAGCACTTTGCCACGCAGTTCACC
ATGTCAGGAGACAGGTGAGGCGTACTACTGTACAACAACCAGAAGGTTTT
CGAAACGATTTCCGGAAGATCGTACACACTTTCCCCGTCGATCAATCAAA
TTTACAGTCTACCTGTCGATCTTCAAGAATTCTTGTACTTTATGTGCTAC
TGCTGCTGTGTTTCGATGGCCTTGAGGGGACGGCCGACCGGGTTCTCGAA
GAGAAGAAATAATGCGTGCTAGAGAGGGGCTTGTTCGTGTGTGTAAGATA
CGTAGGTGACTTTCAGAGCCGCGAGACATGCGATGGATCACAAGCTTTAC
CTCCTCCAGTGTGAGATAGGTGGTGCTGCACAGCAAACAGGAAGAAGTCG
TGAACCACTGTGGATTGGTGTGTTCTAGACGGCTTTGCATCCGAAGCGCC
GCCTTCCCTACTACTATCACTGGTAAGGAGAAATATAAGGCCTTGAGAAC
CCCGTACCGCAGCACCTCCGGTGGGGAACAACTCATGATAGCACCGGAGG
AGTGATTTCTGTGTGAGCACAATGACTACAGATGTATCGCTTGTAGGTTT
GAAAAGAGTTTCTACAGTACCGGTAGAAGGCGCCAACAAAGCGACTGCTT
TAAGCTCATGAATCGTGAGGTGGGCTCAAGAAAGGCGGTCTGCGCCAGTT
TCCAAGAAGTAGGCAAGTAAAGTTGGTGTGAAGACACTCTCTCTCTATTG
CCCCGGTAGTACATGTAGCTATGCACGTCATCGAGGCACATGATTGCTGT
ATACTTCCTTCAACCATCGCAAGCAATTGGTGATTGCCAACACTGCATGG
AGGGAGGGGTGGATCAGTAATTTTTGGGCCATACTGTAGCAAGAAACATG
GTCTACATGTAGGTATTTTTATTAGTTCGTATCAAGTGTTGGGACATACA
TGCTCTTTGCAGCCCCATCCTCGCACTGTTGCACCGACATCCTGCCACGA
GTATTCCTGCGCTGGTGAAGACCGCCCTTTCTCTCTCTTTCCCGGAAACG
CTTGCCGACGGCCTCGCGACGCCGGACAAGCAGATCACATTCCACGCGCA
AAACGCATGGGCTGCGACGTCGACAAACGAGCGGTGTCGCCGGCAAATGC
ACATCGTGCCGATCTCGGTTGGTGCTGTGCACATCTGCTTCTTCTCTCTG
GTGCTGCGAGACGTCCTGTGGTGGGCTTTTGTGGTGATGATAGTTGGTCA
GATCCCAGTTTCCATCGGCATCTTCGTCTCCACGCTTCGAATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17941:1405..2747-

>mRNA_Ecto-sp13_S_contig17941.5475.1 ID=mRNA_Ecto-sp13_S_contig17941.5475.1|Name=mRNA_Ecto-sp13_S_contig17941.5475.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17941:1405..2747- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGGGCGCGCCTCGTGTGTTCTTAAGAACGCCCGTTTCGTTTTCGG
TTGGGTCGAGTTGGCGGTTTCCGTGGTAGCACTTTGCCACGCAGTTCACC
ATGTCAGGAGACAGCAGATCACATTCCACGCGCAAAACGCATGGGCTGCG
ACGTCGACAAACGAGCGGTGTCGCCGGCAAATGCACATCGTGCCGATCTC
GGTTGGTGCTGTGCACATCTGCTTCTTCTCTCTGGTGCTGCGAGACGTCC
TGTGGTGGGCTTTTGTGGTGATGATAGTTGGTCAGATCCCAGTTTCCATC
GGCATCTTCGTCTCCACGCTTCGAATG
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