mRNA_Ecto-sp13_S_contig17921.5468.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17921.5468.1
Unique NamemRNA_Ecto-sp13_S_contig17921.5468.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17921.5468.1 vs. uniprot
Match: A0A6H5JI88_9PHAE (Myb-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI88_9PHAE)

HSP 1 Score: 494 bits (1272), Expect = 9.350e-164
Identity = 320/472 (67.80%), Postives = 329/472 (69.70%), Query Frame = 1 
Query:   13 MFPNVAEEERTRDSDAGTAAQAXXXXXXXXXXVPAASNGSPPXXXXXXXPAALSVGPGVAAPGAVSSPSPALAPLSAHHNPLGSFPSRSPSPQAPATPPKPAHERLWSGVQGPLWRFRCSPRTPVLLAPPSAILDAVAGGSGLCPTGDQPRPDGSSVRRGSLLGLGPVDAVLIFDEGPPITTRTAXXXXXXXXXXXXXXSRAALTAALQSLLTLPQCARRSSAPRAIRSMSATGGVAADENGRVDGGGVTTAAGRAEGENVVTVVRYVADGTIEETLEGEGDSGIGSLGA--------------------------------------------------------------------------------------GVEGIVVRCSLEGKTFLNQGGAGSASASEGTEAISLSGTKRKAADXXXXXXXCNGADMLGADGKHWSEGAPPLRRTCPWSPVGVEDILVEEMVQVS 1170
            MFPNVAEEE TR SDAGTA  A  XXXXXXXX          XXXXXXX AA+ VGPGVAAPGAVSSPSPALAPLSAHHNPLGSFPSRSPSPQAPATPPKPAHERLWSGVQGPLWRFRCSPRTPVLLAPPSAIL+AVAGGSGLCP G+QPRPDGSSVR+GSL GLGP+DAVLIFDEGPPIT  TA XXXXXXXX       AAL AALQSLLTLP CARRSSAPRAIRSM ATGG AADENGRVD GGV TAAGRAEGE VVTVVRYV DGTIEETLEGEGD GI SLG                                                                                       GVEGI VRCSLEGKT+L QG A SASASEGTEA+SLSGTKRKA           GADMLGADGKHWSEGAPPLRRTCPWSPV VEDILVEEMVQ++
Sbjct:    1 MFPNVAEEESTRGSDAGTATPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXAAIRVGPGVAAPGAVSSPSPALAPLSAHHNPLGSFPSRSPSPQAPATPPKPAHERLWSGVQGPLWRFRCSPRTPVLLAPPSAILEAVAGGSGLCPNGEQPRPDGSSVRKGSLCGLGPIDAVLIFDEGPPITRATATXXXXXXXX-------AALAAALQSLLTLPLCARRSSAPRAIRSMLATGGGAADENGRVDRGGVATAAGRAEGERVVTVVRYVVDGTIEETLEGEGDKGISSLGGRPLGEVLFGPTYSDRGSAKPVSAGATSEAASAPEIPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPPAAGAEVGVEGIAVRCSLEGKTYLKQGEAASASASEGTEAVSLSGTKRKAGGG-------GGADMLGADGKHWSEGAPPLRRTCPWSPVRVEDILVEEMVQMN 458
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BLAST of mRNA_Ecto-sp13_S_contig17921.5468.1 vs. uniprot
Match: D7FME7_ECTSI (Myb-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME7_ECTSI)

HSP 1 Score: 511 bits (1315), Expect = 3.820e-162
Identity = 323/391 (82.61%), Postives = 334/391 (85.42%), Query Frame = 1 
Query:    1 GNGEMFPNVAEEERTRDSDAGTAAQAXXXXXXXXXXVPAASNGSPPXXXXXXXPAALSVGPGVAAPGAVSSPSPALAPLSAHHNPLGSFPSRSPSPQAPATPPKPAHERLWSGVQGPLWRFRCSPRTPVLLAPPSAILDAVAGGSGLCPTGDQPRPDGSSVRRGSLLGLGPVDAVLIFDEGPPITTRTAXXXXXXXXXXXXXXSRAALTAALQSLLTLPQCARRSSAPRAIRSMSATGG-VAADENGRVDGGGVTTAAGRAEGENVVTVVRYVADGTIEETLEGEGDSGIGSLGAGVEGIVVRCSLEGKTFLNQGGAGSASASEGTEAISLSGTKRKAADXXXXXXXCNGADMLGADGKHWSEGAPPLRRTCPWSPVGVEDILVEEMVQVS 1170
            GNGEMFPNVAEEE TR  DAGTAA AXXXXXXXXXX          XXXXXXX AALSVGPGVAA       SPALAPLSAHHNPLGSFPSRSP PQAP TPPKPAHERLWSGVQGPLWRFRCSPRTPVLLAPPSAIL+AVAGGSGLCP G+QPRPDGSSVRRGSLLGLGP+DAVLIFDEGPPITTRT  XXXXXXXXXX   SRAAL AALQSLLTLP+CARRSSAPRAIRSM ATGG  AADENGRVDG            E+VVTVVRYVA+GTIEETLEGEGD GI SLGAG EGI VRCSLEGKTFL QG A SASASEGTEA+SLSGTKRKAAD XXXX  C+G DMLGA+GKHWSEGAPPLRRTCPWSPVGVEDILVEEMVQ++
Sbjct: 1395 GNGEMFPNVAEEESTRGVDAGTAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXX-AALSVGPGVAAXXXXXXXSPALAPLSAHHNPLGSFPSRSPFPQAPVTPPKPAHERLWSGVQGPLWRFRCSPRTPVLLAPPSAILEAVAGGSGLCPNGEQPRPDGSSVRRGSLLGLGPIDAVLIFDEGPPITTRTTAXXXXXXXXXXW--SRAALAAALQSLLTLPRCARRSSAPRAIRSMPATGGGAAADENGRVDGXXXXXXXXXXXXESVVTVVRYVANGTIEETLEGEGDKGISSLGAGGEGIAVRCSLEGKTFLKQGEAASASASEGTEAVSLSGTKRKAADGXXXXG-CSGVDMLGANGKHWSEGAPPLRRTCPWSPVGVEDILVEEMVQMN 1781
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17921.5468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JI88_9PHAE9.350e-16467.80Myb-like domain-containing protein n=1 Tax=Ectocar... [more]
D7FME7_ECTSI3.820e-16282.61Myb-like domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17921contigEcto-sp13_S_contig17921:12..3118 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1170
Hectar predicted targeting categoryother localisation
Exons5
Cds size1158
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17921.5468.1prot_Ecto-sp13_S_contig17921.5468.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17921 12..3106 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462927.963331-CDS-Ecto-sp13_S_contig17921:11..2121681462927.963331-CDS-Ecto-sp13_S_contig17921:11..212Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17921 12..212 -
1681462927.9737182-CDS-Ecto-sp13_S_contig17921:554..6441681462927.9737182-CDS-Ecto-sp13_S_contig17921:554..644Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17921 555..644 -
1681462927.9837544-CDS-Ecto-sp13_S_contig17921:1443..18711681462927.9837544-CDS-Ecto-sp13_S_contig17921:1443..1871Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17921 1444..1871 -
1681462927.9938989-CDS-Ecto-sp13_S_contig17921:2360..25361681462927.9938989-CDS-Ecto-sp13_S_contig17921:2360..2536Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17921 2361..2536 -
1681462928.0040684-CDS-Ecto-sp13_S_contig17921:2843..31061681462928.0040684-CDS-Ecto-sp13_S_contig17921:2843..3106Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17921 2844..3106 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462928.0166662-UTR-Ecto-sp13_S_contig17921:3106..31181681462928.0166662-UTR-Ecto-sp13_S_contig17921:3106..3118Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17921 3107..3118 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17921.5468.1

>prot_Ecto-sp13_S_contig17921.5468.1 ID=prot_Ecto-sp13_S_contig17921.5468.1|Name=mRNA_Ecto-sp13_S_contig17921.5468.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=386bp
MFPNVAEEERTRDSDAGTAAQAAAAAATAATSVPAASNGSPPGAPAAAPP
AALSVGPGVAAPGAVSSPSPALAPLSAHHNPLGSFPSRSPSPQAPATPPK
PAHERLWSGVQGPLWRFRCSPRTPVLLAPPSAILDAVAGGSGLCPTGDQP
RPDGSSVRRGSLLGLGPVDAVLIFDEGPPITTRTATATATATATAATSSS
RAALTAALQSLLTLPQCARRSSAPRAIRSMSATGGVAADENGRVDGGGVT
TAAGRAEGENVVTVVRYVADGTIEETLEGEGDSGIGSLGAGVEGIVVRCS
LEGKTFLNQGGAGSASASEGTEAISLSGTKRKAADGGGGGGGCNGADMLG
ADGKHWSEGAPPLRRTCPWSPVGVEDILVEEMVQVS
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mRNA from alignment at Ecto-sp13_S_contig17921:12..3118-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17921.5468.1 ID=mRNA_Ecto-sp13_S_contig17921.5468.1|Name=mRNA_Ecto-sp13_S_contig17921.5468.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3107bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17921:12..3118- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAACGGAGAGATGTTCCCGAACGTCGCCGAAGAGGAGAGAACGAGAGA
TTCCGACGCGGGCACTGCTGCTCAAGCGGCGGCAGCAGCAGCGACGGCGG
CGACGTCGGTGCCGGCCGCGTCGAACGGGAGCCCGCCTGGTGCGCCGGCC
GCAGCCCCTCCCGCCGCTCTCAGCGTCGGGCCGGGGGTGGCAGCACCGGG
GGCTGTTTCATCGCCGTCCCCCGCTTTGGCGCCCCTCAGCGCGCACCACA
ACCCGCTCGGATCTTTCCCTTCACGGTGAGCCCTTTTTATTTATTCGTAT
GTTGTTGTCCGCGGTGCCTCCTCCCCCCCAGTCTGTTCGATATTCTGCGT
CCAACACTGAAAACTAAGAAGCGCCCACTCTAAACACTTACCAAACACTG
CTTTCGGTGTGCCCATTGACCGAATTGTATCCAGGCCCCCTCCCCCCCAA
ACACCAACCACGACTCCAAAGCCAGCCGCCACAAGAGTTGTTCTAGCTTA
CGTAAGCTTAAAATTGTTTATATCCACGGTGCCCCCCTCCCCCGCTCCTC
CCCGGCCGGTGGTCTGTTCCATGTATACCCAGGTCTCCCTCTCCCCAAGC
ACCAGCCACGCCACCAAAGCCCGCCCACGAGCGGCTCTGGAGCGGGGTGC
AGGGGCCTCTCTGGCGCTTTAGATGCTCGCCCCGGACTCCGGTGCTGCTG
GCGCCGCCTTCGGCTATCCTTGATGCCGTGGCGGGAGGTTCTGGCCTCTG
CCCGACCGGTAGGGCGCGGGCTCTTGCTTGTGTTGTTGTCGATTTTTGCT
ATTGTTTTGTTCCAAGAGAACGAACAGATTTAACTCTTTTTGATGTATCC
ACAGATGAAAGAATCTGGAAGAAACTGTAGTTTCTTGGTATGGCCTGTTC
AGTTTTTTTTTCCGCTGACGTCGGACTTGGACATCGTGTAGCTAATGGCT
CGGGATCTAGCTGTACAGCAGTACGCTTGCTGGCTCTGTTGCTGTTGGCG
TTGCGTTGTGCTCTCGATGATCGCCGTGAGTACCGAACCAATACGCGTGG
TATGTATTACGTTGTCCGTCTCTACCCCAACCCCACCTTGTACGTGTATC
CCGACCCCATCACACGTTCTTACCCTTTTTCGTCTCTTTGCCGACCCCCT
GTCACTCCCAACCCCTTTTCATCTTGTTGCCAACCAGATCTCTCTCTCTA
CCCTTTTTCGCCTTGTATACCGGCCCCATGTTTCTCCTCCTCCGCAGGCG
ATCAGCCCAGACCCGACGGGAGCAGCGTGCGCAGGGGTTCCCTGTTGGGT
CTTGGTCCCGTCGACGCCGTCCTCATCTTCGACGAAGGGCCTCCGATAAC
AACAAGAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAGCGACGT
CATCGTCTCGGGCAGCACTAACGGCGGCGCTGCAGAGCCTCCTCACGCTT
CCCCAGTGCGCGAGGCGCTCCTCTGCGCCAAGAGCCATCCGCAGCATGTC
GGCAACGGGAGGGGTGGCGGCGGATGAGAACGGGAGGGTCGACGGGGGGG
GAGTCACCACGGCGGCGGGCAGGGCCGAGGGGGAGAACGTGGTGACGGTG
GTCCGATACGTGGCGGACGGCACCATCGAGGAGACGTTGGAGGGGGAAGG
GGACAGTGGTATCGGCAGCCTTGGGGTGAGAGGAGGTGTTTGGTGTGTGT
GGGACTGGGGAGGGTGGTTGCTATTATAGGGCAAGGCGGATTGGAGGGCT
GTGAATTGACGGAGAAGGGGGGTGCGGGAAGGGCGAGGGTTTACGGCTCC
GGGAAGGCTTTCAGATAGTGCGTTTTGAGGAGAACCCTCTTGACAGCTCC
TCGAGATGGCGTCGACAATTTTTATGGCACTTCTCGCTTGTTGGGGAATG
TATTTCCTGGAGTCTGGCGCTTTGCTCCGATAGGCTTGACCGCCATGAAC
TGCTTCGAAGTCGCGTCTTGAGTTGTGTTTGTTTCCCAAGCTGTTGTTGT
TTTCTTCACTTTTGAAAACCGTTCCGTACTCTGCTCAGTACCTCGAACAT
CCGTAGTACTAGCCCATGTGTACGCGTGCGCGTTCCGTGGGCACAAGACA
GTCATCCACGTAGCACAGCGTACACACACCGCGGAAAAAACCCTCAGAGA
AACAAAACGCAAGTGACCCAACAACGTCAACACAAGCTTTTAGACGTTTC
GTCTTTTTTTTTTTTTTGTGTGTATCAGGGGAGACCGCTTGGAGAGGTCC
TCTTCGGCCCCACCTACAGCGACAGAGGGTCAGCGACAAGCGAGGCAGCG
TCCGCTCCTGAGACGCCGGCCGCAGCAGCAGCAGCAGCAGCGGCAACAGC
AGCAGTAACACCAACAGCCGCAGCAGGTGCCGCCAAGACGTACGGGTCCG
ATCCCATGGACGTGGACGTGGAGAAAGGTGCCGCAGTCGCCGCCGCCGAT
TCTCCTCCCGCTGCGGGCACGGAGGCCGGTGTAGAGGGTATCGTCGTGCG
GTGTTCGCTGGAGGGGAAGACTTTCTTGAATCAAGGAGGGGCGGGGTCGG
CATCGGCCTCCGAGGTAGGTGGATGTGTTTTTTTGTTTCAAAAATGAGAG
TGTCTTTTTTGCGCGTGTGTTCGGGATTTGTTCATTTGATAGGTAGGGTT
TGTTTTTTCTGGGAAAACTACAAGTACATTTTAGTGTGGGTTTTGCGGAA
AATGTGACCTATTATCATGTGCAGCGTTTGGTTTCGGGGAAAAAAACTTA
TATAACGAAGAGATGAAGAAAAAAAGGGGCGATCCATAAGCGCATACACT
GAAAAGTGTGGTACACGGCTCACCACGAAAAATGGGGGGACTTTCGTCCA
TCATTAATAGGACGAAAACACAAACACGCATTCATTTCGGGGTATAAATA
TTCCAGGGTACGGAGGCGATATCTCTGTCGGGGACGAAGAGAAAGGCTGC
CGACGGCGGCGGTGGCGGCGGCGGTTGCAACGGCGCGGATATGCTAGGCG
CCGACGGCAAGCACTGGAGCGAGGGGGCTCCGCCGTTGCGGAGGACGTGT
CCCTGGTCCCCCGTGGGGGTAGAGGACATCCTCGTCGAGGAAATGGTGCA
GGTGAGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17921:12..3118-

>mRNA_Ecto-sp13_S_contig17921.5468.1 ID=mRNA_Ecto-sp13_S_contig17921.5468.1|Name=mRNA_Ecto-sp13_S_contig17921.5468.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1158bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17921:12..3118- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCCCGAACGTCGCCGAAGAGGAGAGAACGAGAGATTCCGACGCGGG
CACTGCTGCTCAAGCGGCGGCAGCAGCAGCGACGGCGGCGACGTCGGTGC
CGGCCGCGTCGAACGGGAGCCCGCCTGGTGCGCCGGCCGCAGCCCCTCCC
GCCGCTCTCAGCGTCGGGCCGGGGGTGGCAGCACCGGGGGCTGTTTCATC
GCCGTCCCCCGCTTTGGCGCCCCTCAGCGCGCACCACAACCCGCTCGGAT
CTTTCCCTTCACGGTCTCCCTCTCCCCAAGCACCAGCCACGCCACCAAAG
CCCGCCCACGAGCGGCTCTGGAGCGGGGTGCAGGGGCCTCTCTGGCGCTT
TAGATGCTCGCCCCGGACTCCGGTGCTGCTGGCGCCGCCTTCGGCTATCC
TTGATGCCGTGGCGGGAGGTTCTGGCCTCTGCCCGACCGGCGATCAGCCC
AGACCCGACGGGAGCAGCGTGCGCAGGGGTTCCCTGTTGGGTCTTGGTCC
CGTCGACGCCGTCCTCATCTTCGACGAAGGGCCTCCGATAACAACAAGAA
CAGCAACAGCAACAGCAACAGCAACAGCAACAGCAGCGACGTCATCGTCT
CGGGCAGCACTAACGGCGGCGCTGCAGAGCCTCCTCACGCTTCCCCAGTG
CGCGAGGCGCTCCTCTGCGCCAAGAGCCATCCGCAGCATGTCGGCAACGG
GAGGGGTGGCGGCGGATGAGAACGGGAGGGTCGACGGGGGGGGAGTCACC
ACGGCGGCGGGCAGGGCCGAGGGGGAGAACGTGGTGACGGTGGTCCGATA
CGTGGCGGACGGCACCATCGAGGAGACGTTGGAGGGGGAAGGGGACAGTG
GTATCGGCAGCCTTGGGGCCGGTGTAGAGGGTATCGTCGTGCGGTGTTCG
CTGGAGGGGAAGACTTTCTTGAATCAAGGAGGGGCGGGGTCGGCATCGGC
CTCCGAGGGTACGGAGGCGATATCTCTGTCGGGGACGAAGAGAAAGGCTG
CCGACGGCGGCGGTGGCGGCGGCGGTTGCAACGGCGCGGATATGCTAGGC
GCCGACGGCAAGCACTGGAGCGAGGGGGCTCCGCCGTTGCGGAGGACGTG
TCCCTGGTCCCCCGTGGGGGTAGAGGACATCCTCGTCGAGGAAATGGTGC
AGGTGAGT
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