mRNA_Ecto-sp13_S_contig17910.5463.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17910.5463.1
Unique NamemRNA_Ecto-sp13_S_contig17910.5463.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17910.5463.1 vs. uniprot
Match: D7FJB6_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJB6_ECTSI)

HSP 1 Score: 416 bits (1069), Expect = 1.890e-128
Identity = 216/229 (94.32%), Postives = 219/229 (95.63%), Query Frame = 3
Query:  648 VCQAILRKYNPSEKVVLQGCASPSAEEPCSSSTSSLFNLEWKPESGNLDLSNGWDDVFSTATSDRVLVVRKGVLGAGRTYTFSLSATDTSGQEGYTEFSFETNAPPAGGHVESNTSSATAGVDGVRLQSMGWTDDVDDLPFTHSFGFVHGCQQEATIASESVLVNRLSSSWSASPTLRTKIPSGLVDDGYNVTILVSVSDSLGSTASTNLGADGTPMIISSTPPEQARL 1334
            V QAILRKYNPSEKVVLQGCASPSAEE CSSSTSSLF LEWKPESGN+DLSNGWDDVFST TSDRVLVVRKGVLGAGRTYTFSLSATDTSGQEGY EFSFETNAPPAGGHVESNTSSATAGVDGVRLQS+GWTDDVDDLPFTHSFGFVHG QQ ATIASESVLVNRLSSSWSASPTLRTKIPSGL DDGYNVTILVSVSDSLGSTASTNLGADGTPMII+STPPEQ  L
Sbjct:  432 VMQAILRKYNPSEKVVLQGCASPSAEELCSSSTSSLFKLEWKPESGNVDLSNGWDDVFSTTTSDRVLVVRKGVLGAGRTYTFSLSATDTSGQEGYAEFSFETNAPPAGGHVESNTSSATAGVDGVRLQSVGWTDDVDDLPFTHSFGFVHGYQQVATIASESVLVNRLSSSWSASPTLRTKIPSGLADDGYNVTILVSVSDSLGSTASTNLGADGTPMIIASTPPEQENL 660          
BLAST of mRNA_Ecto-sp13_S_contig17910.5463.1 vs. uniprot
Match: D7FJB7_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJB7_ECTSI)

HSP 1 Score: 328 bits (841), Expect = 2.220e-96
Identity = 178/296 (60.14%), Postives = 215/296 (72.64%), Query Frame = 3
Query:  654 QAILRKYNPSEKVVLQGCASPSAEEPCSSSTSSLFNLEWKPESGNLDLSNGWDDVFSTATSDRVLVVRKGVLGAGRTYTFSLSATDTSGQEGYTEFSFETNAPPAGGHVESNTSSATAGVDGVRLQSMGWTDDVDDLPFTHSFGFVHGCQQEATIAS-ESVLVNRLSSSWSASPTLRTKIPSGLVDDGYNVTILVSVSDSLGSTASTNLGADGTPMIISSTPPEQARLGNKYD*EGGASVLSLAYGLTCFPTD-FCGNESLAYPEDTLRDARVATALLLDAPRTNASDIEAIVALQ 1535
            Q ILRKYNPSEK+VL  CAS S E PC SSTSS F L W+ E+GNLDL NGW   FST  + R LV RKG LGAG+ Y+FSLSATD SG  GY EFSFETNAPP+GGH++S+  SATAGV+ V LQ++GWTDD+DDLP T+SFG++ G  +   IAS ES LVNRLSSS S S TL T +P+GL  + +N+TI+VS SD+LGSTA+TNLG DG PM+++S  PE+A            S+L LAY LTC+P +  C N SL YPEDTLRDARVATALL   P T +  +E+  +LQ
Sbjct:  263 QTILRKYNPSEKIVLYACASSSPEGPCDSSTSSSFGLTWRQENGNLDLRNGWTKAFSTPVNARTLVTRKGALGAGQVYSFSLSATDASGLVGYAEFSFETNAPPSGGHLKSDRLSATAGVNPVVLQTLGWTDDIDDLPLTYSFGYIQGYHEVIAIASSESALVNRLSSSPSVSTTLTTNVPAGLSRNEFNLTIVVSASDTLGSTAATNLGEDGAPMVVTSVAPEEA------------SLLPLAYNLTCYPGEPSCQNGSLPYPEDTLRDARVATALLQHVPLTTSDGVESTSSLQ 546          
BLAST of mRNA_Ecto-sp13_S_contig17910.5463.1 vs. uniprot
Match: A0A6H5JCS7_9PHAE (REJ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS7_9PHAE)

HSP 1 Score: 315 bits (808), Expect = 8.900e-92
Identity = 173/314 (55.10%), Postives = 214/314 (68.15%), Query Frame = 3
Query:  654 QAILRKYNPSEKVVLQGCASPSAEEPCSSSTSSLFNLEWKP-------------------ESGNLDLSNGWDDVFSTATSDRVLVVRKGVLGAGRTYTFSLSATDTSGQEGYTEFSFETNAPPAGGHVESNTSSATAGVDGVRLQSMGWTDDVDDLPFTHSFGFVHGCQQEATIASESVLVNRLSSSWSASPTLRTKIPSGLVDDGYNVTILVSVSDSLGSTASTNLGADGTPMIISSTPPEQARLGNKYD*EGGASVLSLAYGLTCFPTD-FCGNESLAYPEDTLRDARVATALLLDAPRTNASDIEAIVALQ 1535
            + ILRKYNPSEK+VL  CAS S E PC SSTSS F L W+                    E+GNLDL NGW + FST  + R L++RKG LGAG+ Y+FSLSATD SG  GY EFSFETNAPP+GGH++S+  SATAGV+ V LQ++GWTDD+DDLP T+SFG++ G  +  TIASES  VN+LSSS S S TL T +P+G+  + +N+TI+VSVSD+LGS A+T LG DG PMI+ S  P++A            S+L LAY LTC+P +  C N SL YPED LRDARVATALL   P T    +EA+ +LQ
Sbjct:  290 KTILRKYNPSEKIVLYACASSSPEGPCDSSTSSSFELMWRQPPPAPTSYLHIPRRCTFHQENGNLDLRNGWSEAFSTPVNARTLIIRKGALGAGQVYSFSLSATDASGLVGYAEFSFETNAPPSGGHLKSDRLSATAGVNPVVLQTLGWTDDIDDLPLTYSFGYIQGYHEVITIASESTFVNKLSSSPSVSTTLSTNVPAGISRNDFNLTIVVSVSDTLGSMAATTLGEDGAPMIVRSVAPQEA------------SLLPLAYNLTCYPDEPSCQNVSLPYPEDALRDARVATALLQHVPLTTLDGVEAMSSLQ 591          
BLAST of mRNA_Ecto-sp13_S_contig17910.5463.1 vs. uniprot
Match: A0A6H5JEI1_9PHAE (REJ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEI1_9PHAE)

HSP 1 Score: 228 bits (582), Expect = 3.830e-67
Identity = 152/321 (47.35%), Postives = 163/321 (50.78%), Query Frame = 3
Query:  159 ADQGEKSQRSQASRIFVGTRRQHLRLQGGRCRQHAEHYLGYCDS*GHQWSNNRPHLRWDNEEGWRHAGPLLQCVRVGG*RPIGQFPLTVQMELY*RRRRRLHISEHGALEY*LTLKRRTTDDNCGYPSNR*TMPCWHVLCEEHVHSRTTSLGDLRAPCVCLRCVCQAILRKYNPSEKVVLQGCASPSAEEPCSSSTSSLFNLEWKPESGNLDLSNGWDDVFSTATSDRVLVVRKGVLGAGRTYTFSLSATDTSGQEGYTEFSFETNAPPAGGHVESNTSSATAGVDGVRLQSMGWTDDVDDLPFTHSFGFVHGCQQEATIA 1121
            ADQGEKSQR QASR F+ TRRQHLRLQG RCRQH E YLGYCD                     R A  LL  V            L  ++E                                G  SN                                                 +L  C++      C            + ES NLDLSNGWDDVFS ATSDRVLVVRKGVLGAGRTY FSLSATDTSGQ+GY E+SFETNAPPAGGHVESNTSSA AGVDGVRLQS+GWTD VD+LPFTHSFGFVHG QQ ATIA
Sbjct:  134 ADQGEKSQRPQASRTFLRTRRQHLRLQGDRCRQHVERYLGYCD---------------------RGAVQLLDVVN-----------LDARVET-------------------------------GLNSN-------------------------------------------------ILPNCSN------C------------RQESENLDLSNGWDDVFSAATSDRVLVVRKGVLGAGRTYAFSLSATDTSGQKGYAEYSFETNAPPAGGHVESNTSSANAGVDGVRLQSIGWTDGVDELPFTHSFGFVHGYQQVATIA 324          
BLAST of mRNA_Ecto-sp13_S_contig17910.5463.1 vs. uniprot
Match: D7G0D8_ECTSI (REJ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0D8_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 1.890e-53
Identity = 109/226 (48.23%), Postives = 150/226 (66.37%), Query Frame = 3
Query:  648 VCQAILRKYNPSEKVVLQGCASPSAEEPCSSSTSSLFNLEWKPESGNLDLSNGWDDVFSTATSDRVLVVRKGVLGAGRTYTFSLSATDTSGQEGYTEFSFETNAPPAGGHVESNTSSATAGVDGVRLQSMGWTDDVDDLPFTHSFGFVHGCQQEATIASESVLVNRLSSSWSASPTLRTKIPSGLVDDGYNVTILVSVSDSLGSTASTNLGADGTPMIISSTPPEQ 1325
            V Q + RKYNPS ++VL GCA+ S E+ C +S+++ F+ +W     N++  N W+DVFST +S    VVR G L  GR YTFSL+ATD+ G  GYTEF+FETNAPP GG+V S+    T+G D   LQ+ GW DD  DLP  + FG+ HG  +  +++SE + V  LSS  S S  L T +P G   +G+N+T++  VSD LGSTA T+LGAD  P+++ S+PP+Q
Sbjct:  365 VSQEVRRKYNPSSRLVLYGCAAASLEDRCRNSSTAGFDFKWDQVDSNIEEEN-WEDVFSTESSHPTQVVRPGSLSPGRIYTFSLAATDSLGSTGYTEFAFETNAPPVGGYVVSDILRMTSGEDKALLQTAGWADDFGDLPMAYEFGYAHGRLEILSVSSE-LWVTMLSSGASYSSLLHTHLPPGTASNGFNMTMVAYVSDVLGSTAVTSLGADNEPLVLVSSPPDQ 588          
BLAST of mRNA_Ecto-sp13_S_contig17910.5463.1 vs. uniprot
Match: D7G4X3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X3_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 1.060e-23
Identity = 78/214 (36.45%), Postives = 113/214 (52.80%), Query Frame = 3
Query:  669 KYNPSEKVVLQGCASPSAEEPCSSSTSSLFNLEWKPESGNLDLSNG-WDDVFSTATSDRVLVVRKGVLGAGRTYTFSLSATDTSGQE-GYTEFSFETNAPPAGGHVESNTSSATAGVDGVRLQSMGWTDDVDDLPFTHSFGFVHGCQQEATIASESVLVNRLSSSWSASPTLRTKIPSGLVDDGYNVTILVSVSDSLGSTASTNLGADGTPMII 1304
            K +P++KVV+ G  S           SS ++L W    G+LDL    W  VF+TA +   LV+ +G+L  G TYTF LSATD + Q  G+ + +   NAPP GGHV ++  +  A +D   L+S+ WTD+VDDLP   SF + +  ++     S SV    L       P  +  +P G   D Y + I   VSDS G+TA +   A G+P+ +
Sbjct:  748 KQDPTKKVVIYGSVS---------EQSSSYDLLWTQAEGDLDLEEREWSTVFATAQTGANLVIPRGLLTGGSTYTFRLSATDVASQATGFADMTLTINAPPTGGHVVASPRAGVAAIDTFVLESLDWTDEVDDLPLLFSFSY-NNEEESGQQRSLSVFAVEL-------PEWQGSLPLGPSSDNYTMLIKGHVSDSFGATAVSTSDAIGSPVTV 944          
BLAST of mRNA_Ecto-sp13_S_contig17910.5463.1 vs. uniprot
Match: A0A6H5JM16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM16_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.900e-21
Identity = 67/165 (40.61%), Postives = 93/165 (56.36%), Query Frame = 3
Query: 1002 TAGVDGVRLQSMGWTDDVDDLPFTHSFGFVHGCQQEATIASESVLVNRLSSSWSASPTLRTKIPSGLVDDGYNVTILVSVSDSLGSTASTNLGADGTPMIISSTPPEQARLGNKYD*EGGASVLSLAYGLTCFPTDFCGNESLAYPEDTLRDARVATALLLDAPR 1496
            T+G D   LQ+ GW DDV DLP  + FG+ HG  +  +++SE + V  LSS  S S  L T +P G   DGYN+T++  VSD LGSTA T+LGAD  P+++ S+PP+Q  L +        S LS   G            SL  P D+LR+A + +A+L   P+
Sbjct:    2 TSGEDKALLQTAGWVDDVGDLPMAYEFGYAHGRLEVLSVSSE-LWVTMLSSGASYSSWLHTHLPPGTASDGYNMTVVAHVSDVLGSTAVTSLGADNEPLVLVSSPPDQVSLSSLRK---NISSLSDQRG------------SLVDPADSLREAAMFSAILEYVPQ 150          
BLAST of mRNA_Ecto-sp13_S_contig17910.5463.1 vs. uniprot
Match: D7FLQ1_ECTSI (REJ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLQ1_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 4.980e-20
Identity = 59/142 (41.55%), Postives = 83/142 (58.45%), Query Frame = 3
Query:  669 KYNPSEKVVLQGCASPSAEEPCSSSTSSLFNLEWKPESGNLDLSNG-WDDVFSTATSDRVLVVRKGVLGAGRTYTFSLSATDTSGQE-GYTEFSFETNAPPAGGHVESNTSSATAGVDGVRLQSMGWTDDVDDLPFTHSFGF 1088
            K +P++KVV+ G  S           SS ++L W    G+LDL    W  VF+TA +   LV+ +G+L  G TYTF LSATD + Q  G+ + +   NAPP GGHV+++  +  A VD   L+S+ WTD+VDDLP   SF +
Sbjct:  456 KQDPTKKVVIYGSVS---------EQSSSYDLLWTQAEGDLDLEEREWSTVFATAQTGANLVIPRGLLTGGSTYTFRLSATDVASQATGFADMTLTINAPPTGGHVDASPRAGVAAVDTFLLESLDWTDEVDDLPLMFSFSY 588          
BLAST of mRNA_Ecto-sp13_S_contig17910.5463.1 vs. uniprot
Match: A0A6P4Z4C2_BRABE (polycystic kidney disease and receptor for egg jelly-related protein-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4Z4C2_BRABE)

HSP 1 Score: 74.7 bits (182), Expect = 2.800e-10
Identity = 68/233 (29.18%), Postives = 113/233 (48.50%), Query Frame = 3
Query:  588 VHSRTTSLGDLRAPCVCLRCVCQAILRKYNPSEKVVLQG---CASPSAEEPCSSSTSSLFNLEWK---PESGNLDLSNGWDDVFSTATSDRVLVVRKGVLGAGRTYTFSLSATDTSGQEGYTEFSFETNAPPAGGHVESNTSSATAGVDGVRLQSMGWTDDVDDLPFTHSFGFVHGCQQEATIASESVLVNRLSSSWSASPTLRTKIPSGLVDDGYNVTILVSVSDSLGSTAS 1268
            ++S+   +    +P V + C+     RK NPSE++VL     C S   +EP        +N   +   P+ G  DL   WD   +T      +VV+ GV  A   YT  ++ +   G+EG+ E++F+ N PPA G    +  + T  V    +   G++D   DLP T++F +  G ++ A++++ +  V  +  +   S      +P GL    YNV I   VSD+LG+T+S
Sbjct: 1197 LYSQILQIFPAGSPTVQITCLSNCE-RKLNPSERLVLSSAYSCPSCRQDEPV------RYNWTLRAAPPDFGRADLL--WDTDTTTGRHLPDVVVQAGVFKAIGEYTLRVAVSLGPGREGFAEYTFQPNEPPAAGSCSVSPENGTVMVTEFTISCTGFSDL--DLPLTYTFLYSTGAERLASVSTATGDVFSILHTGQDSELSGVLLPIGLESRDYNVIIRADVSDALGATSS 1418          
BLAST of mRNA_Ecto-sp13_S_contig17910.5463.1 vs. uniprot
Match: A0A329RIW5_9STRA (GPS domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RIW5_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.310e-7
Identity = 61/189 (32.28%), Postives = 92/189 (48.68%), Query Frame = 1
Query:    1 LQIAGSASWKQWRGLPLTVRTEVTSPRSQDDNVTYIWTLASEHSATEDFPPVTLTKGRNPSVLKLPAYSLGHAGSIYVFRV--AVAGSMPSTTSATATVEVISGAIIAHIFGGTMRRVGVMQDLYFNASVSVDDDQLDNSL-LQFRWNC------TDDVGEDCISPSTELLNIDSLSSGGLLTITAGTL 540
            L I  SAS+    G P+T  T+     S D ++T+ W   +       F   +     NP +LKLPA +L   G  YVFR+  A+A ++    SA   V V    + A I  G  R +GV QDL  +AS+SVD D + NS+ +Q+ W C      T      C++ + E L +D+ +    +T+ A T+
Sbjct: 3047 LVITASASYPSCSG-PVTTDTDAAV--STDVDMTFTWLQVTGDLTATQFKSTS----PNPRILKLPARTLT-VGVSYVFRLVAAMASNLKVNNSADVQVGVARTDLTAMISAGN-RSIGVEQDLALDASLSVDPDDVQNSVSMQYSWTCWTLNASTQVYDVACLTATGETLTLDTQAK---ITVAASTV 3223          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17910.5463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FJB6_ECTSI1.890e-12894.32GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FJB7_ECTSI2.220e-9660.14GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JCS7_9PHAE8.900e-9255.10REJ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JEI1_9PHAE3.830e-6747.35REJ domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0D8_ECTSI1.890e-5348.23REJ domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4X3_ECTSI1.060e-2336.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM16_9PHAE1.900e-2140.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLQ1_ECTSI4.980e-2041.55REJ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6P4Z4C2_BRABE2.800e-1029.18polycystic kidney disease and receptor for egg jel... [more]
A0A329RIW5_9STRA1.310e-732.28GPS domain-containing protein n=2 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17910contigEcto-sp13_S_contig17910:60..3538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score123.2
Seed ortholog evalue1.8e-25
Seed eggNOG ortholog2880.D7G4X3
Model size1535
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.detection of mechanical stimulus
EggNOG OGsKOG3599@1,KOG3599@2759
Cds size798
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17910.5463.1prot_Ecto-sp13_S_contig17910.5463.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17910 467..2005 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462927.5252314-UTR-Ecto-sp13_S_contig17910:59..2331681462927.5252314-UTR-Ecto-sp13_S_contig17910:59..233Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17910 60..233 -
1681462927.5354147-UTR-Ecto-sp13_S_contig17910:457..4661681462927.5354147-UTR-Ecto-sp13_S_contig17910:457..466Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17910 458..466 -
1681462927.5846095-UTR-Ecto-sp13_S_contig17910:2005..20081681462927.5846095-UTR-Ecto-sp13_S_contig17910:2005..2008Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17910 2006..2008 -
1681462927.6001818-UTR-Ecto-sp13_S_contig17910:2356..25471681462927.6001818-UTR-Ecto-sp13_S_contig17910:2356..2547Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17910 2357..2547 -
1681462927.6099622-UTR-Ecto-sp13_S_contig17910:2977..30481681462927.6099622-UTR-Ecto-sp13_S_contig17910:2977..3048Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17910 2978..3048 -
1681462927.6199553-UTR-Ecto-sp13_S_contig17910:3249..35381681462927.6199553-UTR-Ecto-sp13_S_contig17910:3249..3538Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17910 3250..3538 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462927.5456178-CDS-Ecto-sp13_S_contig17910:466..6951681462927.5456178-CDS-Ecto-sp13_S_contig17910:466..695Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17910 467..695 -
1681462927.5550826-CDS-Ecto-sp13_S_contig17910:1013..12001681462927.5550826-CDS-Ecto-sp13_S_contig17910:1013..1200Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17910 1014..1200 -
1681462927.5644283-CDS-Ecto-sp13_S_contig17910:1466..16261681462927.5644283-CDS-Ecto-sp13_S_contig17910:1466..1626Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17910 1467..1626 -
1681462927.573171-CDS-Ecto-sp13_S_contig17910:1783..20051681462927.573171-CDS-Ecto-sp13_S_contig17910:1783..2005Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17910 1784..2005 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17910.5463.1

>prot_Ecto-sp13_S_contig17910.5463.1 ID=prot_Ecto-sp13_S_contig17910.5463.1|Name=mRNA_Ecto-sp13_S_contig17910.5463.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=266bp
MPCWHVLCEEHVHSRTTSLGDLRAPCVCLRCVCQAILRKYNPSEKVVLQG
CASPSAEEPCSSSTSSLFNLEWKPESGNLDLSNGWDDVFSTATSDRVLVV
RKGVLGAGRTYTFSLSATDTSGQEGYTEFSFETNAPPAGGHVESNTSSAT
AGVDGVRLQSMGWTDDVDDLPFTHSFGFVHGCQQEATIASESVLVNRLSS
SWSASPTLRTKIPSGLVDDGYNVTILVSVSDSLGSTASTNLGADGTPMII
SSTPPEQARLGNKYD*
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mRNA from alignment at Ecto-sp13_S_contig17910:60..3538-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17910.5463.1 ID=mRNA_Ecto-sp13_S_contig17910.5463.1|Name=mRNA_Ecto-sp13_S_contig17910.5463.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3479bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17910:60..3538- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCAGATTGCGGGATCTGCATCTTGGAAGCAGTGGCGTGGGCTTCCGCT TACCGTCCGCACCGAGGTAACGTCACCTCGTTCCCAAGATGACAACGTCA CTTACATATGGACCCTGGCTTCAGAACACAGTGCCACGGAAGACTTTCCA CCAGTCACGCTGACCAAGGGGAGAAATCCCAGCGTTCTCAAGCTTCCCGC ATATTCGTTGGGACACGCCGGCAGCATCTACGTCTTCAGGGTGGCCGTTG CAGGCAGCATGCCGAGCACTACCTCGGCTACTGCGACAGGTGCTCCCAAG GTCATGCGTTGACCACATTCCATTTCCGCATCAGCTTCCGCCTCTGGCTT GGGCATGTCGAAACAAGACGACCCGTTCCCATCGATGTATTGATCGATCT GTGTCACTGATCGATCTGTGTTGAATTCATCATTCTCTAGTAGCCACTGA AACGAAACTGACTGCGTTCCCTAACGCTTCGCCCCGACAGTTGAGGTCAT CAGTGGAGCAATAATCGCCCACATCTTCGGTGGGACAATGAGGAGGGTTG GCGTCATGCAGGTGAAATTCCAAAGAGGTTGATACCGTGCCTGAGATCAA GCTAGTGCATGTTTGAATCTACGCTTCTTTGTCGATAATACAACCATTAG GCTACACCCCAGGACACCATCATCCAAGTCGACAACGGTTTTGCCATAGG CAAAAGATGCGCCGTCACGACCAAGTAATACTCGAATTTCGATTTGATCT TGGTGGGAGAAGCATTTCCTTGAACACCAAGCGTCCTTGTCGTATGCGGG GAAAATACCTTTCAACATTCCTTCTTCATTTCAATTTTTCTTCATCAAAC GTTGGCTGCTGACGGGTCCTAGATTGTTGATACATGGGATGGATAGGGCT GTGCAGATCAAACTACATGATCGCTTCGCCATCAAGTTAAAAATCTCCTC TACTCTCGTTCGCTGCACATGCATTTATCGGTGTGTTTCAGGACCTCTAC TTCAATGCGTCCGTGTCGGTGGATGACGACCAATTGGACAATTCCCTCTT ACAGTTCAGATGGAATTGTACTGACGACGTCGGAGAAGATTGCATATCTC CGAGCACGGAGCTCTTGAATATTGACTCACTCTCAAGCGGAGGACTACTG ACGATAACTGCGGGTACCCTTCCAATCGGTAGGTCCAACGGTCATACGGC NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNCGAGTATCGTAGACGATGCCGTGTTGGCATGT GCTGTGCGAGGAGCATGTTCACAGCCGAACGACATCACTTGGCGACCTAC GTGCACCGTGCGTTTGTCTTCGTTGCGTGTGTCAGGCCATTCTCCGCAAA TACAACCCTTCGGAAAAAGTTGTCCTACAGGGGTGCGCCTCCCCATCTGC AGAGGAGCCGTGCAGCTCCTCGACGTCGTCGCTCTTCAATCTAGAGTGGA AACCGGTAAGAAAAGAGCGGCCCCCGCGCGCGGTGGAGCTTCCTAAGATG TCCACGAAGAGGGGATATGCATCTGAACTATACGTGACCCTTCAGCGTAC TGTGCGTAGGAGGTGCAGGGCTAGACTCTGATGTTCTTTCCCACTGCTCG AACTGTCGACAGGAGAGCGGAAACCTCGACTTGAGCAATGGGTGGGACGA TGTATTCAGCACCGCCACGAGCGATCGGGTGCTCGTTGTCCGAAAAGGAG TCCTTGGCGCGGGGCGGACGTACACGTTCTCCCTATCTGCAACCGACACA TCCGGGCAGGAAGGCTACACAGGTCAGTGTTAAAACGTAGACACAACGTG GTCCCAATTGATCCTGATTACCTGAGCACGGTCGCCCGTTGTTTAAGAGA GTTTTTTTATGGAGCTGAAGTTGTCATGTCGGACCGGACACTGCGTGAGG AGGGCGACTAAGAACCCACTCCCTAATTGGTTCTCTGTCTCATTTTGCAA CGCGGCCGTAATGGAGTACAGTACTTCCCCATGATGCCCGCCAATGATTT TCCTCTCAAGAGTTTGTTTCCTACCTACGCCCAAACAGAGTTTTCGTTCG AGACCAACGCCCCCCCCGCTGGGGGGCACGTGGAATCCAACACCTCATCG GCAACCGCCGGCGTCGATGGCGTCCGTCTCCAGAGCATGGGGTGGACGGA TGACGTGGACGATCTTCCGTTCACGCACTCCTTTGGGTTCGTGCATGGAT GCCAACAAGAAGCAACGATCGCGAGGTACCTCGTCTCCTGATCCCGATAG GTTCAAATGTTCAGCATGTTGTCGCATGTTGCTCATCGCCATCTGGACCG AGGTAAACATCGTTTCGCAGAATCCCTGACACATCCACACGGTATCAGTG CTCCAAGAATGTCTGCGCGGCACTGTTCCGTTCCGGCTATTGACCCATTG AAGTACTAGTACGACTAGACGAGAAAATGAGAACGAACATGAGAACAAAC ATGAACCTAGGTCGAAAATAGAACCCTTGTGCCCGAGGTCACGACCCGTG CTACCCAACGCTCCCGTTCGTCAAACGTTTTCCTTCTACATAGTGAATCG GTGCTAGTGAACCGCTTGTCTTCCTCTTGGTCAGCATCGCCCACCCTGCG CACCAAGATCCCGTCCGGCTTGGTGGACGATGGGTACAATGTCACGATCC TGGTGTCTGTCTCCGACTCCCTCGGATCGACAGCTTCAACAAATCTTGGA GCCGATGGCACACCAATGATCATCTCATCGACTCCTCCAGAGCAGGCGAG ACTGGGCAACAAATACGATTGAGAAGGCGGGGTAATATTTTGGACGATTT CTGATGGAGGAGTTCGGATTCAGACTGATAGAGCCAGCAGCCTTTAAGTG CGAGAGTAGTATGAGTTTCACAAAACGTAGTGTAGCAGGTAAGGGACGTC GTGAGGTTGCGGGCAGCGAAAACCTCATGGCTTACCCACTGCTTACCCAC TGTTTGCCTCGTCAAAGGCGCCTAACAACCTTGTGCCGCTGACGGCGACG TGCAGGCTTCGGTGCTGTCGCTGGCATACGGCCTGACTTGTTTTCCTACC GATTTCTGCGGAAACGAGTCTTTGGCGTATCCAGAGGATACCCTCCGTGA TGCGCGAGTCGCTACGGCGCTTCTGTTGGATGCGCCACGAACAAATGCTA GCGACATCGAGGCTATCGTGGCCCTTCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17910:60..3538-

>mRNA_Ecto-sp13_S_contig17910.5463.1 ID=mRNA_Ecto-sp13_S_contig17910.5463.1|Name=mRNA_Ecto-sp13_S_contig17910.5463.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=798bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17910:60..3538- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGTGTTGGCATGTGCTGTGCGAGGAGCATGTTCACAGCCGAACGAC
ATCACTTGGCGACCTACGTGCACCGTGCGTTTGTCTTCGTTGCGTGTGTC
AGGCCATTCTCCGCAAATACAACCCTTCGGAAAAAGTTGTCCTACAGGGG
TGCGCCTCCCCATCTGCAGAGGAGCCGTGCAGCTCCTCGACGTCGTCGCT
CTTCAATCTAGAGTGGAAACCGGAGAGCGGAAACCTCGACTTGAGCAATG
GGTGGGACGATGTATTCAGCACCGCCACGAGCGATCGGGTGCTCGTTGTC
CGAAAAGGAGTCCTTGGCGCGGGGCGGACGTACACGTTCTCCCTATCTGC
AACCGACACATCCGGGCAGGAAGGCTACACAGAGTTTTCGTTCGAGACCA
ACGCCCCCCCCGCTGGGGGGCACGTGGAATCCAACACCTCATCGGCAACC
GCCGGCGTCGATGGCGTCCGTCTCCAGAGCATGGGGTGGACGGATGACGT
GGACGATCTTCCGTTCACGCACTCCTTTGGGTTCGTGCATGGATGCCAAC
AAGAAGCAACGATCGCGAGTGAATCGGTGCTAGTGAACCGCTTGTCTTCC
TCTTGGTCAGCATCGCCCACCCTGCGCACCAAGATCCCGTCCGGCTTGGT
GGACGATGGGTACAATGTCACGATCCTGGTGTCTGTCTCCGACTCCCTCG
GATCGACAGCTTCAACAAATCTTGGAGCCGATGGCACACCAATGATCATC
TCATCGACTCCTCCAGAGCAGGCGAGACTGGGCAACAAATACGATTGA
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