mRNA_Ecto-sp13_S_contig17887.5447.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17887.5447.1
Unique NamemRNA_Ecto-sp13_S_contig17887.5447.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17887.5447.1 vs. uniprot
Match: E6ZES5_ECTSI (NADH dehydrogenase subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZES5_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 6.150e-48
Identity = 105/145 (72.41%), Postives = 110/145 (75.86%), Query Frame = 1
Query:    1 FLAISILVVLLHGSFLGVTAASLHSYLTPSMVRPTSATLFFKSAISY**SC*ITNFMECYFYS---RTCAKFIIFIGLIFCVSVSESYMFSARFRAYEFFAFILGIALSVCLFISSYDFLSIYLSMEFLSLIFYVLDNKKKNSYF 426
            FLAISILVVLLHGSFLGV AASLHSYLT SMVR T+A LF    +               F +    T AKFIIFIGL+FCVSVSESYMFSARFRAYEFF FILGIALS+CL ISSYD LSIYLSMEFLSLIFYVL   KKNSYF
Sbjct:   19 FLAISILVVLLHGSFLGVIAASLHSYLTSSMVRLTTAILFLSLLLVINNPVESQTLWNAIFIADHLSTWAKFIIFIGLLFCVSVSESYMFSARFRAYEFFVFILGIALSLCLLISSYDLLSIYLSMEFLSLIFYVLAAWKKNSYF 163          
BLAST of mRNA_Ecto-sp13_S_contig17887.5447.1 vs. uniprot
Match: A0A089N305_PETFA (NADH dehydrogenase subunit 2 n=6 Tax=Ectocarpales TaxID=2877 RepID=A0A089N305_PETFA)

HSP 1 Score: 169 bits (427), Expect = 1.700e-47
Identity = 102/145 (70.34%), Postives = 110/145 (75.86%), Query Frame = 1
Query:    1 FLAISILVVLLHGSFLGVTAASLHSYLTPSMVRPTSATLFFKSAISY**SC*ITNFMECYF---YSRTCAKFIIFIGLIFCVSVSESYMFSARFRAYEFFAFILGIALSVCLFISSYDFLSIYLSMEFLSLIFYVLDNKKKNSYF 426
            FLAI+ILVVLLHGSFLGVTAASL+SYLTPSM+R TSA LF    +               F   Y  T AKFII +GL+FCVS+SE YMFSARFRAYEFF FILGIALS+CL ISSYD LSIYLSMEFLSLIFYVL   KKNSYF
Sbjct:   19 FLAIAILVVLLHGSFLGVTAASLYSYLTPSMIRLTSAILFLSLLLVLNNPVESQTLWNAIFITDYLSTWAKFIILVGLLFCVSISEVYMFSARFRAYEFFVFILGIALSLCLLISSYDLLSIYLSMEFLSLIFYVLACWKKNSYF 163          
BLAST of mRNA_Ecto-sp13_S_contig17887.5447.1 vs. uniprot
Match: A0A1I9LW35_9PHAE (NADH dehydrogenase subunit 2 n=2 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW35_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 6.540e-47
Identity = 99/145 (68.28%), Postives = 109/145 (75.17%), Query Frame = 1
Query:    1 FLAISILVVLLHGSFLGVTAASLHSYLTPSMVRPTSATLFFKSAISY**SC*ITNFMECYF---YSRTCAKFIIFIGLIFCVSVSESYMFSARFRAYEFFAFILGIALSVCLFISSYDFLSIYLSMEFLSLIFYVLDNKKKNSYF 426
            FLA SIL+VLLHGSFLGVTAASL++YLTPSMVR TS TLF    +       +       F   Y    AKFI+F+GL+FCVSVSESYMF ARFRAYEFF FILGI LS+CL ISSYD LSIYLSMEFLSLIFYVL   KK+SYF
Sbjct:   19 FLAFSILIVLLHGSFLGVTAASLYTYLTPSMVRVTSVTLFLALLLVINNPIEVQTLWNALFITDYLSNWAKFIVFVGLLFCVSVSESYMFLARFRAYEFFVFILGIGLSLCLLISSYDLLSIYLSMEFLSLIFYVLAAWKKDSYF 163          
BLAST of mRNA_Ecto-sp13_S_contig17887.5447.1 vs. uniprot
Match: A0A3G5FPS0_9PHAE (NADH dehydrogenase subunit 2 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPS0_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 7.320e-45
Identity = 99/145 (68.28%), Postives = 109/145 (75.17%), Query Frame = 1
Query:    1 FLAISILVVLLHGSFLGVTAASLHSYLTPSMVRPTSATLFFKSAISY**SC*ITNFMECYF---YSRTCAKFIIFIGLIFCVSVSESYMFSARFRAYEFFAFILGIALSVCLFISSYDFLSIYLSMEFLSLIFYVLDNKKKNSYF 426
            FLAISILVVLLHGSFLGVTAASL++YLTPSMVR TS  LF    +               F   Y  + AK I+ +GLIFCVSVSE+YMFSARFRAYE F FILGIALS+CL ISSYD LSIYLSMEF+SLIFYVL + KKNSYF
Sbjct:   19 FLAISILVVLLHGSFLGVTAASLYTYLTPSMVRLTSLILFLSLLLIVNNPVGSQTLWNAIFITDYIGSWAKSIVVLGLIFCVSVSEAYMFSARFRAYELFVFILGIALSLCLLISSYDLLSIYLSMEFISLIFYVLASWKKNSYF 163          
BLAST of mRNA_Ecto-sp13_S_contig17887.5447.1 vs. uniprot
Match: A0A8F0FC15_9PHAE (NADH dehydrogenase subunit 2 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0FC15_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 1.080e-44
Identity = 98/145 (67.59%), Postives = 112/145 (77.24%), Query Frame = 1
Query:    1 FLAISILVVLLHGSFLGVTAASLHSYLTPSMVRPTSATLFFKSAI---SY**SC*ITNFMECYFYSRTCAKFIIFIGLIFCVSVSESYMFSARFRAYEFFAFILGIALSVCLFISSYDFLSIYLSMEFLSLIFYVLDNKKKNSYF 426
            FLA++ILVVLLHGSFLGV+AASL++YLTPSMVR TSA LF    +   +   S  + N +    Y  T AKFI+F+GL+F VSV E YMFSARFRAYEFF FI+GI LS+CL ISSYD LSIYLSMEFLSLIFYVL   KKNSYF
Sbjct:   19 FLAVTILVVLLHGSFLGVSAASLYTYLTPSMVRLTSAILFLSLLLVLNNPVESKTLWNALYVTDYVGTWAKFIVFLGLLFSVSVCEPYMFSARFRAYEFFVFIIGIGLSLCLLISSYDLLSIYLSMEFLSLIFYVLATWKKNSYF 163          
BLAST of mRNA_Ecto-sp13_S_contig17887.5447.1 vs. uniprot
Match: Q94Z01_PYLLI (NADH dehydrogenase subunit 2 n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94Z01_PYLLI)

HSP 1 Score: 160 bits (404), Expect = 3.930e-44
Identity = 97/145 (66.90%), Postives = 108/145 (74.48%), Query Frame = 1
Query:    1 FLAISILVVLLHGSFLGVTAASLHSYLTPSMVRPTSATLFFKSAISY**SC*ITNFMECYF---YSRTCAKFIIFIGLIFCVSVSESYMFSARFRAYEFFAFILGIALSVCLFISSYDFLSIYLSMEFLSLIFYVLDNKKKNSYF 426
            FLAI+ILV+LLHGSFLGV AASL++YLTP MVR TSA+L     +               F   Y  T AK IIF+GL+FCVSVSE+YMFSARFR+YEFF FILGI LS+CL ISSYD LSIYLSMEFLSLIFYVL   KKNSYF
Sbjct:   19 FLAIAILVILLHGSFLGVVAASLYTYLTPYMVRLTSASLVLSLLLVINNPVESQTLWNAIFITDYLGTWAKSIIFLGLLFCVSVSEAYMFSARFRSYEFFVFILGIGLSLCLLISSYDLLSIYLSMEFLSLIFYVLATWKKNSYF 163          
BLAST of mRNA_Ecto-sp13_S_contig17887.5447.1 vs. uniprot
Match: F8UWM7_9PHAE (NADH dehydrogenase subunit 2 n=61 Tax=Laminariales TaxID=2886 RepID=F8UWM7_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 7.950e-44
Identity = 96/145 (66.21%), Postives = 109/145 (75.17%), Query Frame = 1
Query:    1 FLAISILVVLLHGSFLGVTAASLHSYLTPSMVRPTSATLFFKSAISY**SC*ITNFMECYFYSR---TCAKFIIFIGLIFCVSVSESYMFSARFRAYEFFAFILGIALSVCLFISSYDFLSIYLSMEFLSLIFYVLDNKKKNSYF 426
            FLAI+ILVVLLHGSFLGV+AASL++YLTPSMVR TS  LF    +               F +    T +K I+F+GLIFCV+VSESYMFSARFRAYEFF F++GI LS+CL ISSYD LSIYLSMEFLSLIFYVL   KKNSYF
Sbjct:   19 FLAIAILVVLLHGSFLGVSAASLYTYLTPSMVRLTSTILFVSLLLVLNNPVESQTLWNSVFVTDNIGTWSKAIVFLGLIFCVAVSESYMFSARFRAYEFFVFVIGIGLSLCLLISSYDLLSIYLSMEFLSLIFYVLAAWKKNSYF 163          
BLAST of mRNA_Ecto-sp13_S_contig17887.5447.1 vs. uniprot
Match: Q2TUE9_9PHAE (NADH dehydrogenase subunit 2 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUE9_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 8.330e-43
Identity = 97/155 (62.58%), Postives = 113/155 (72.90%), Query Frame = 1
Query:    1 FLAISILVVLLHGSFLGVTAASLHSYLTPSMVRPTSATLFFKSAISY**SC*ITNFMECYFYSRTC-------------AKFIIFIGLIFCVSVSESYMFSARFRAYEFFAFILGIALSVCLFISSYDFLSIYLSMEFLSLIFYVLDNKKKNSYF 426
            FLAIS+LVVLLHGSFLGV+AASL++YLTPS+ R TS  LF    +       I N +E    S+T              AKFI+F+GL+FCVSVSE+YMFSARFRAYE + FI+GI LS+CL ISSYD LSIYLSMEFLSLIFYVL + KKNSYF
Sbjct:   19 FLAISLLVVLLHGSFLGVSAASLYTYLTPSIARLTSIILFLSLLLV------INNPVE----SQTLWNALFVTDHLAIWAKFIVFLGLLFCVSVSEAYMFSARFRAYEIYVFIIGIGLSLCLLISSYDLLSIYLSMEFLSLIFYVLASWKKNSYF 163          
BLAST of mRNA_Ecto-sp13_S_contig17887.5447.1 vs. uniprot
Match: A0A8F0FCX9_9PHAE (NADH dehydrogenase subunit 2 n=3 Tax=Laminariales TaxID=2886 RepID=A0A8F0FCX9_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 1.700e-41
Identity = 94/145 (64.83%), Postives = 107/145 (73.79%), Query Frame = 1
Query:    1 FLAISILVVLLHGSFLGVTAASLHSYLTPSMVRPTSATLFFKSAISY**SC*ITNFMECYFYSR---TCAKFIIFIGLIFCVSVSESYMFSARFRAYEFFAFILGIALSVCLFISSYDFLSIYLSMEFLSLIFYVLDNKKKNSYF 426
            FLAI+ILV+LLHGSFLGVTAASL++YLTPSM+R TS  LF    +    +          F +    T +KFIIFIGL+FCVSV E+ MFSARFRAYEFF FI+ I LS+ L ISSYD LSIYLSMEFLSLIFYVL   KKNSYF
Sbjct:   19 FLAIAILVLLLHGSFLGVTAASLYTYLTPSMIRLTSTILFLSLLLVLNNAVESQTLWNALFITDQLGTWSKFIIFIGLLFCVSVCEASMFSARFRAYEFFVFIISIGLSLSLLISSYDLLSIYLSMEFLSLIFYVLAAWKKNSYF 163          
BLAST of mRNA_Ecto-sp13_S_contig17887.5447.1 vs. uniprot
Match: A0A8F0K0T6_9PHAE (NADH dehydrogenase subunit 2 n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0K0T6_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 2.410e-41
Identity = 92/145 (63.45%), Postives = 105/145 (72.41%), Query Frame = 1
Query:    1 FLAISILVVLLHGSFLGVTAASLHSYLTPSMVRPTSATLFFKSAISY**SC*ITNFMECYF---YSRTCAKFIIFIGLIFCVSVSESYMFSARFRAYEFFAFILGIALSVCLFISSYDFLSIYLSMEFLSLIFYVLDNKKKNSYF 426
            FLAISILV+LLHGSFLG +AASL++YLTPS+VR TS  LF    +               F   Y  T AKFII +GLIFCVS+ E+YMFS RFRA+EFF F++ I LS+CL ISSYD LSIYLSMEFLSLIFYVL   KKNSYF
Sbjct:   19 FLAISILVLLLHGSFLGASAASLYTYLTPSLVRLTSTILFLSIFLVLNNPVEHQTLWNALFVSDYLSTWAKFIILLGLIFCVSICEAYMFSVRFRAFEFFVFLISIGLSLCLLISSYDLLSIYLSMEFLSLIFYVLACWKKNSYF 163          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17887.5447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
E6ZES5_ECTSI6.150e-4872.41NADH dehydrogenase subunit 2 n=1 Tax=Ectocarpus si... [more]
A0A089N305_PETFA1.700e-4770.34NADH dehydrogenase subunit 2 n=6 Tax=Ectocarpales ... [more]
A0A1I9LW35_9PHAE6.540e-4768.28NADH dehydrogenase subunit 2 n=2 Tax=Pleurocladia ... [more]
A0A3G5FPS0_9PHAE7.320e-4568.28NADH dehydrogenase subunit 2 n=1 Tax=Cladosiphon o... [more]
A0A8F0FC15_9PHAE1.080e-4467.59NADH dehydrogenase subunit 2 n=1 Tax=Chorda asiati... [more]
Q94Z01_PYLLI3.930e-4466.90NADH dehydrogenase subunit 2 n=1 Tax=Pylaiella lit... [more]
F8UWM7_9PHAE7.950e-4466.21NADH dehydrogenase subunit 2 n=61 Tax=Laminariales... [more]
Q2TUE9_9PHAE8.330e-4362.58NADH dehydrogenase subunit 2 n=2 Tax=Desmarestia T... [more]
A0A8F0FCX9_9PHAE1.700e-4164.83NADH dehydrogenase subunit 2 n=3 Tax=Laminariales ... [more]
A0A8F0K0T6_9PHAE2.410e-4163.45NADH dehydrogenase subunit 2 n=1 Tax=Analipus japo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17887contigEcto-sp13_S_contig17887:3..428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size426
Hectar predicted targeting categorysignal anchor
Exons1
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462925.805945-CDS-Ecto-sp13_S_contig17887:2..2601681462925.805945-CDS-Ecto-sp13_S_contig17887:2..260Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17887 3..260 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462925.8144803-UTR-Ecto-sp13_S_contig17887:260..4281681462925.8144803-UTR-Ecto-sp13_S_contig17887:260..428Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17887 261..428 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17887.5447.1prot_Ecto-sp13_S_contig17887.5447.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17887 3..260 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17887.5447.1

>prot_Ecto-sp13_S_contig17887.5447.1 ID=prot_Ecto-sp13_S_contig17887.5447.1|Name=mRNA_Ecto-sp13_S_contig17887.5447.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
MECYFYSRTCAKFIIFIGLIFCVSVSESYMFSARFRAYEFFAFILGIALS
VCLFISSYDFLSIYLSMEFLSLIFYVLDNKKKNSYF
back to top

mRNA from alignment at Ecto-sp13_S_contig17887:3..428-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17887.5447.1 ID=mRNA_Ecto-sp13_S_contig17887.5447.1|Name=mRNA_Ecto-sp13_S_contig17887.5447.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17887:3..428- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTCTTGCAATTTCTATTTTAGTTGTTTTGTTGCATGGTAGTTTTTTAGG TGTTACCGCAGCCTCTTTACATAGTTATCTTACACCGAGTATGGTTCGGC CAACTTCTGCAACTTTATTTTTTAAGTCTGCTATTAGTTATTAATAATCC TGTTGAATCACAAACTTTATGGAATGCTATTTTTATAGTAGAACTTGCGC CAAATTTATTATTTTTATTGGTCTTATTTTTTGCGTCTCAGTGAGTGAAT CTTACATGTTTTCTGCTCGTTTTCGGGCTTATGAGTTTTTTGCATTTATT CTCGGCATTGCTTTAAGTGTATGCTTATTTATTTCATCCTACGATTTTCT TTCTATTTATTTAAGTATGGAATTTTTATCACTTATTTTTTACGTCTTGG ATAATAAAAAAAAAAATTCATATTTT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17887:3..428-

>mRNA_Ecto-sp13_S_contig17887.5447.1 ID=mRNA_Ecto-sp13_S_contig17887.5447.1|Name=mRNA_Ecto-sp13_S_contig17887.5447.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17887:3..428- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAATGCTATTTTTATAGTAGAACTTGCGCCAAATTTATTATTTTTAT
TGGTCTTATTTTTTGCGTCTCAGTGAGTGAATCTTACATGTTTTCTGCTC
GTTTTCGGGCTTATGAGTTTTTTGCATTTATTCTCGGCATTGCTTTAAGT
GTATGCTTATTTATTTCATCCTACGATTTTCTTTCTATTTATTTAAGTAT
GGAATTTTTATCACTTATTTTTTACGTCTTGGATAATAAAAAAAAAAATT
CATATTTT
back to top