mRNA_Ecto-sp13_S_contig1788.5444.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1788.5444.1
Unique NamemRNA_Ecto-sp13_S_contig1788.5444.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1788.5444.1 vs. uniprot
Match: D7FZH6_ECTSI (WD repeat domain-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH6_ECTSI)

HSP 1 Score: 221 bits (564), Expect = 4.000e-64
Identity = 124/149 (83.22%), Postives = 132/149 (88.59%), Query Frame = -2 
Query:    3 TGEERGGGAASPRDRALLPQLPTAAPPACSESDRPPQVSGESKEPRTPPQGMRSGAEPIAARSSSPLHPPGPGGATGRVLNDFASQLAPAAAEEGGAAIGDKPTERASVAAPQGWLERDAAKRRPVDAAPRVEAGAADSDRTRSESIDA 449
            TGEE GGGAA PRDRALL QLPTAAPPACSESDR PQ SG SKE  T PQG+RS AEPIAARSSSPLHPPGPGGATG+VL+DFAS +AP AAE+GGAAIGD+PT RASVA PQGWLERDAAKRRPVDA PRV AGAA SDRTRSE++DA
Sbjct:  349 TGEEGGGGAACPRDRALLSQLPTAAPPACSESDRAPQESGGSKESLTLPQGVRSSAEPIAARSSSPLHPPGPGGATGKVLDDFASPVAPVAAEQGGAAIGDRPTGRASVATPQGWLERDAAKRRPVDATPRVGAGAAGSDRTRSEAMDA 497
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1788.5444.1 vs. uniprot
Match: A0A6H5LKE0_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKE0_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 5.200e-59
Identity = 118/149 (79.19%), Postives = 122/149 (81.88%), Query Frame = -2 
Query:    3 TGEERGGGAASPRDRALLPQLPTAAPPACSESDRPPQVSGESKEPRTPPQGMRSGAEPIAARSSSPLHPPGPGGATGRVLNDFASQLAPAAAEEGGAAIGDKPTERASVAAPQGWLERDAAKRRPVDAAPRVEAGAADSDRTRSESIDA 449
            TGEERGGGA SPRDRALLPQLPTAAPPACSE               T PQG+RSGAEPIAARSSSPLHPPGPGG TG+VLNDFAS LAP AAE+GGAAIGD+P  RASVAAPQGWLE DAAKRRPVDA PR  AGAA SDRTRSESIDA
Sbjct:  366 TGEERGGGAVSPRDRALLPQLPTAAPPACSEXXXXXXXXXXXXXXXTSPQGVRSGAEPIAARSSSPLHPPGPGGPTGKVLNDFASPLAPVAAEQGGAAIGDRPMGRASVAAPQGWLEGDAAKRRPVDATPRAGAGAAGSDRTRSESIDA 514
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1788.5444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZH6_ECTSI4.000e-6483.22WD repeat domain-containing protein, putative n=1 ... [more]
A0A6H5LKE0_9PHAE5.200e-5979.19PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1788contigEcto-sp13_S_contig1788:12012..12464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size455
Hectar predicted targeting categoryother localisation
Exons1
Cds size444
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462925.6796675-UTR-Ecto-sp13_S_contig1788:12011..120201681462925.6796675-UTR-Ecto-sp13_S_contig1788:12011..12020Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1788 12012..12020 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462925.6907492-CDS-Ecto-sp13_S_contig1788:12020..124641681462925.6907492-CDS-Ecto-sp13_S_contig1788:12020..12464Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1788 12021..12464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1788.5444.1prot_Ecto-sp13_S_contig1788.5444.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1788 12021..12464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1788.5444.1

>prot_Ecto-sp13_S_contig1788.5444.1 ID=prot_Ecto-sp13_S_contig1788.5444.1|Name=mRNA_Ecto-sp13_S_contig1788.5444.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=148bp
MDSDRVRSLSAAPASTRGAASTGLRFAASRSSQPCGAATDALSVGLSPMA
APPSSAAAGANCEAKSFKTLPVAPPGPGGCKGEEERAAIGSAPDRMPCGG
VRGSLDSPETCGGRSDSEHAGGAAVGSCGSNARSRGDAAPPPLSSPVR
back to top

mRNA from alignment at Ecto-sp13_S_contig1788:12012..12464+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1788.5444.1 ID=mRNA_Ecto-sp13_S_contig1788.5444.1|Name=mRNA_Ecto-sp13_S_contig1788.5444.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=453bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1788:12012..12464+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGCATCTATGGATTCCGACCGTGTCCGATCACTGTCGGCCGCTCCCGC
TTCTACTCGTGGCGCGGCGTCCACCGGCCTTCGCTTCGCCGCATCCCGTT
CAAGCCAACCCTGCGGTGCTGCGACCGACGCCCTCTCCGTCGGCTTGTCC
CCGATGGCCGCACCACCTTCTTCCGCGGCAGCCGGAGCCAACTGTGAAGC
GAAATCGTTCAAAACCCTACCAGTCGCCCCGCCAGGGCCCGGCGGGTGCA
AGGGGGAGGAAGAACGTGCGGCGATCGGTTCAGCACCCGACCGCATGCCC
TGTGGTGGTGTACGCGGCTCCTTAGACTCTCCCGAAACTTGTGGTGGTCG
ATCAGATTCTGAGCACGCGGGCGGCGCCGCCGTGGGCAGCTGTGGCAGCA
ATGCCCGGTCTCGTGGGGATGCCGCTCCCCCGCCTCTCTCCTCTCCCGTC
CGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1788:12012..12464+

>mRNA_Ecto-sp13_S_contig1788.5444.1 ID=mRNA_Ecto-sp13_S_contig1788.5444.1|Name=mRNA_Ecto-sp13_S_contig1788.5444.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1788:12012..12464+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATTCCGACCGTGTCCGATCACTGTCGGCCGCTCCCGCTTCTACTCG
TGGCGCGGCGTCCACCGGCCTTCGCTTCGCCGCATCCCGTTCAAGCCAAC
CCTGCGGTGCTGCGACCGACGCCCTCTCCGTCGGCTTGTCCCCGATGGCC
GCACCACCTTCTTCCGCGGCAGCCGGAGCCAACTGTGAAGCGAAATCGTT
CAAAACCCTACCAGTCGCCCCGCCAGGGCCCGGCGGGTGCAAGGGGGAGG
AAGAACGTGCGGCGATCGGTTCAGCACCCGACCGCATGCCCTGTGGTGGT
GTACGCGGCTCCTTAGACTCTCCCGAAACTTGTGGTGGTCGATCAGATTC
TGAGCACGCGGGCGGCGCCGCCGTGGGCAGCTGTGGCAGCAATGCCCGGT
CTCGTGGGGATGCCGCTCCCCCGCCTCTCTCCTCTCCCGTCCGA
back to top