mRNA_Ecto-sp13_S_contig17863.5435.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17863.5435.1 vs. uniprot
Match: D7G637_ECTSI (Homocysteine S-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G637_ECTSI) HSP 1 Score: 176 bits (447), Expect = 8.540e-52 Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 1
Query: 1 EEENAKQHQQPLSGSEGRPHRRRLRPLVAASLGCYGAVLADGSEYRGDYVDTPAGSLKEFHARRLEILARADGVDMVVFETVPCLAEVRAILS 279
EEENAKQHQQP+ GS+GR HRRRLRPLVAASLGCYGAVLADGSEYRGDYVDTPAGSLKEFHARRLEILARADGVDMVVFETVPCLAEVRAILS
Sbjct: 139 EEENAKQHQQPVRGSDGRRHRRRLRPLVAASLGCYGAVLADGSEYRGDYVDTPAGSLKEFHARRLEILARADGVDMVVFETVPCLAEVRAILS 231
BLAST of mRNA_Ecto-sp13_S_contig17863.5435.1 vs. uniprot
Match: A0A6H5KFQ7_9PHAE (Hcy-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ7_9PHAE) HSP 1 Score: 172 bits (437), Expect = 3.990e-50 Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 1
Query: 1 EEENAKQHQQPLSGSEGRPHRRRLRPLVAASLGCYGAVLADGSEYRGDYVDTPAGSLKEFHARRLEILARADGVDMVVFETVPCLAE 261
EEEN KQHQQPLSGSEGRPHRRRLRPLVAASLGCYGAVLADGSEYRGDYVDTPAGSLKEFHARRLEILARADGVDMVVFETVPCLAE
Sbjct: 169 EEENPKQHQQPLSGSEGRPHRRRLRPLVAASLGCYGAVLADGSEYRGDYVDTPAGSLKEFHARRLEILARADGVDMVVFETVPCLAE 255
BLAST of mRNA_Ecto-sp13_S_contig17863.5435.1 vs. uniprot
Match: I0YMA9_COCSC (Homocysteine S-methyltransferase AtHMT-1 n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YMA9_COCSC) HSP 1 Score: 82.0 bits (201), Expect = 1.090e-16 Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 1
Query: 64 RRLRPLVAASLGCYGAVLADGSEYRGDYVDTPAGS-LKEFHARRLEILARADGVDMVVFETVPCLAEVRAI 273
+RLRPLVA S G YGA LADGSEY G Y + + L +FH +RL+ + A GVD++ FETVPCL E+RAI
Sbjct: 91 KRLRPLVAFSAGPYGAALADGSEYDGSYAERVSEEQLMDFHRQRLQAIVGAPGVDLIAFETVPCLKELRAI 161
BLAST of mRNA_Ecto-sp13_S_contig17863.5435.1 vs. uniprot
Match: A0A433P5G0_9FUNG (Homocysteine S-methyltransferase n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433P5G0_9FUNG) HSP 1 Score: 82.8 bits (203), Expect = 1.190e-16 Identity = 37/68 (54.41%), Postives = 48/68 (70.59%), Query Frame = 1
Query: 70 LRPLVAASLGCYGAVLADGSEYRGDYVDTPAGSLKEFHARRLEILARADGVDMVVFETVPCLAEVRAI 273
+RPLVA SLGCYGA+LA+GSEY G+Y+D L +FH +RL + G+D+V FET+P L E AI
Sbjct: 164 VRPLVALSLGCYGAMLANGSEYTGEYLDATTEQLVDFHRQRLRVFFAEPGIDLVAFETIPSLQEAEAI 231
BLAST of mRNA_Ecto-sp13_S_contig17863.5435.1 vs. uniprot
Match: UPI001749A229 (homocysteine S-methyltransferase n=1 Tax=Nocardioides flavus Wang et al. 2016 TaxID=2058780 RepID=UPI001749A229) HSP 1 Score: 80.9 bits (198), Expect = 3.080e-16 Identity = 42/68 (61.76%), Postives = 50/68 (73.53%), Query Frame = 1
Query: 82 VAASLGCYGAVLADGSEYRGDYVDTPAGSLKEFHARRLEILARA--DGVDMVVFETVPCLAEVRAILS 279
VAAS+G YGAVLADGSEYRGDY D L+ FH RLE+LA DG D++ ET+PCLAEV A+L+
Sbjct: 110 VAASVGPYGAVLADGSEYRGDY-DLDVAGLRAFHRPRLEVLASTVGDGADVLAVETIPCLAEVEAVLA 176
BLAST of mRNA_Ecto-sp13_S_contig17863.5435.1 vs. uniprot
Match: A0A835ZJM3_9STRA (Homocysteine S-methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJM3_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 5.920e-16 Identity = 45/72 (62.50%), Postives = 53/72 (73.61%), Query Frame = 1
Query: 61 RRRLRPLVAASLGCYGAVLADGSEYRGDYVDTPAGSLKEFHARRLEILARADGVDMVVFETVPCLAEVRAIL 276
RRRLRPLVAAS+G YGA LADGSEY+G+Y T L ++H RL LA A G D+V ETVPCLAE RA++
Sbjct: 140 RRRLRPLVAASVGSYGAFLADGSEYKGNYGMT-IEQLMDWHRPRLRALA-ATGADLVACETVPCLAEARALV 209
BLAST of mRNA_Ecto-sp13_S_contig17863.5435.1 vs. uniprot
Match: A0A7Y9KQW4_9ACTN (Homocysteine S-methyltransferase n=1 Tax=Nocardioides cavernae TaxID=1921566 RepID=A0A7Y9KQW4_9ACTN) HSP 1 Score: 80.1 bits (196), Expect = 6.360e-16 Identity = 42/68 (61.76%), Postives = 50/68 (73.53%), Query Frame = 1
Query: 82 VAASLGCYGAVLADGSEYRGDYVDTPAGSLKEFHARRLEILARA--DGVDMVVFETVPCLAEVRAILS 279
VAAS+G YGAVLADGSEYRGDY D L+ FH RL++LA DG D++ ETVPCLAEV A+L+
Sbjct: 114 VAASVGPYGAVLADGSEYRGDY-DLDVAGLRAFHRPRLDVLASTVGDGADVLAVETVPCLAEVEAVLA 180
BLAST of mRNA_Ecto-sp13_S_contig17863.5435.1 vs. uniprot
Match: A0A835SWU2_CHLIN (Hcy-binding domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835SWU2_CHLIN) HSP 1 Score: 80.9 bits (198), Expect = 6.570e-16 Identity = 40/72 (55.56%), Postives = 48/72 (66.67%), Query Frame = 1
Query: 67 RLRPLVAASLGCYGAVLADGSEYRGDYVDT-PAGSLKEFHARRLEILARADGVDMVVFETVPCLAEVRAILS 279
R RPL+A S G YGA LADGSE+RGDY D+ PA L FH RLE + +D++ FETVPCL E AI+
Sbjct: 155 RRRPLIAYSCGSYGAYLADGSEFRGDYADSVPADELMGFHRTRLEPVRSRPEIDLIAFETVPCLREAEAIVE 226
BLAST of mRNA_Ecto-sp13_S_contig17863.5435.1 vs. uniprot
Match: A0A7Y3DZB4_9GAMM (Homocysteine S-methyltransferase n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A7Y3DZB4_9GAMM) HSP 1 Score: 80.1 bits (196), Expect = 7.160e-16 Identity = 40/74 (54.05%), Postives = 53/74 (71.62%), Query Frame = 1
Query: 58 HRRRLRPLVAASLGCYGAVLADGSEYRGDYVDTPAGSLKEFHARRLEILARADGVDMVVFETVPCLAEVRAILS 279
HRRRLRPLVAAS+G YGA+L DGSEY G+Y D +L++FH RL++LA +D D++ FET+P E +L
Sbjct: 116 HRRRLRPLVAASIGPYGAILHDGSEYHGNY-DLNRRALRDFHRSRLDVLAESDA-DLLAFETIPSQEEAEILLE 187
BLAST of mRNA_Ecto-sp13_S_contig17863.5435.1 vs. uniprot
Match: A0A8J9SJ70_9CHLO (Homocysteine S-methyltransferase 1 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SJ70_9CHLO) HSP 1 Score: 79.3 bits (194), Expect = 7.560e-16 Identity = 39/70 (55.71%), Postives = 49/70 (70.00%), Query Frame = 1
Query: 67 RLRPLVAASLGCYGAVLADGSEYRGDYVD-TPAGSLKEFHARRLEILARADGVDMVVFETVPCLAEVRAI 273
R+RPLVA S G YGA LADGSEY G Y + L +FH +RL+ +A G+D++ FETVPCL E+RAI
Sbjct: 85 RVRPLVAFSAGPYGAALADGSEYDGSYAERVTEEQLVDFHRQRLQAIAGQPGIDLIAFETVPCLKELRAI 154 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17863.5435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17863.5435.1 >prot_Ecto-sp13_S_contig17863.5435.1 ID=prot_Ecto-sp13_S_contig17863.5435.1|Name=mRNA_Ecto-sp13_S_contig17863.5435.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=93bp EEENAKQHQQPLSGSEGRPHRRRLRPLVAASLGCYGAVLADGSEYRGDYVback to top mRNA from alignment at Ecto-sp13_S_contig17863:3315..3595- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17863.5435.1 ID=mRNA_Ecto-sp13_S_contig17863.5435.1|Name=mRNA_Ecto-sp13_S_contig17863.5435.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=281bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17863:3315..3595- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17863:3315..3595- >mRNA_Ecto-sp13_S_contig17863.5435.1 ID=mRNA_Ecto-sp13_S_contig17863.5435.1|Name=mRNA_Ecto-sp13_S_contig17863.5435.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17863:3315..3595- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |