mRNA_Ecto-sp13_S_contig17859.5431.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17859.5431.1
Unique NamemRNA_Ecto-sp13_S_contig17859.5431.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17859.5431.1 vs. uniprot
Match: A0A6H5JM44_9PHAE (GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM44_9PHAE)

HSP 1 Score: 410 bits (1055), Expect = 1.650e-140
Identity = 199/217 (91.71%), Postives = 205/217 (94.47%), Query Frame = 1
Query:   10 FSTLQRFLSKAGDEVEILTTDDKEDRPESHLDFPITTTSGFRFILYNQACARLNVVV------HRKGWAMIDRMKPDIIHVTSPGFLVLPSLFYARFFRVPMLFSYHTHLPLYGRTYLGWIPGIEAMSWAVLRYAHNKADLTLCTSPQMQQQLKDNGIERVDVWRKGIDVERFNPKFACKEMRSRLTDGHPEDPLIIYVGRLGAEKRLRDIKGVLER 642
            F  + +FLSKAGDEVEILTTDDK++RPESHLDFPITTTSGFRFILYNQACA LNVV+       RKGWAMIDRMKPDIIHVTSPGFLVLPSLFYARFFRVPMLFSYHTHLPLYGRTYLGWIPGIEAMSWAVLRYAHNKADLTLCTSPQMQQQL+ NGIERVDVWRKGIDVERFNPKFACKEMRSRLTDGHPEDPLIIYVGRLGAEKRLRDIKGVLER
Sbjct:   56 FREMLKFLSKAGDEVEILTTDDKDERPESHLDFPITTTSGFRFILYNQACATLNVVIMLTFDWERKGWAMIDRMKPDIIHVTSPGFLVLPSLFYARFFRVPMLFSYHTHLPLYGRTYLGWIPGIEAMSWAVLRYAHNKADLTLCTSPQMQQQLEANGIERVDVWRKGIDVERFNPKFACKEMRSRLTDGHPEDPLIIYVGRLGAEKRLRDIKGVLER 272          
BLAST of mRNA_Ecto-sp13_S_contig17859.5431.1 vs. uniprot
Match: A0A7S2XXM0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXM0_9STRA)

HSP 1 Score: 253 bits (646), Expect = 1.450e-79
Identity = 117/211 (55.45%), Postives = 155/211 (73.46%), Query Frame = 1
Query:   10 FSTLQRFLSKAGDEVEILTTDDKEDRPESHLDFPITTTSGFRFILYNQACARLNVVVHRKGWAMIDRMKPDIIHVTSPGFLVLPSLFYARFFRVPMLFSYHTHLPLYGRTYLGWIPGIEAMSWAVLRYAHNKADLTLCTSPQMQQQLKDNGIERVDVWRKGIDVERFNPKFACKEMRSRLTDGHPEDPLIIYVGRLGAEKRLRDIKGVLER 642
            F  + +FL KAGDEV I+TTDD +D P  HL + I  T GFRF LYNQ     ++ +  KG  MI ++KPD+IH TSPGF+   +L YAR FR+P+L SYHTHLP+Y R YL ++PG    +WA+LR  HN+ADLTL TSPQM+++L ++G++RV+VWRKGID E F+PK+  + MR +L+ GHPEDPL+IYVGRLG EK+L  +K VL +
Sbjct:  108 FKEMLKFLKKAGDEVSIVTTDDVKDAPTKHLGYEIQNTKGFRFPLYNQIVLTFDLEL--KGMQMIRKLKPDVIHCTSPGFITFAALIYARMFRIPLLMSYHTHLPIYARDYLWFLPGSVHWAWAMLRLVHNRADLTLVTSPQMKEELTEHGVQRVEVWRKGIDTEVFDPKYKSQTMREKLSAGHPEDPLMIYVGRLGTEKKLELLKDVLHK 316          
BLAST of mRNA_Ecto-sp13_S_contig17859.5431.1 vs. uniprot
Match: A0A6T5MMG1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5MMG1_HETAK)

HSP 1 Score: 257 bits (656), Expect = 2.020e-79
Identity = 124/211 (58.77%), Postives = 153/211 (72.51%), Query Frame = 1
Query:   10 FSTLQRFLSKAGDEVEILTTDDKEDRPESHLDFPITTTSGFRFILYNQACARLNVVVHRKGWAMIDRMKPDIIHVTSPGFLVLPSLFYARFFRVPMLFSYHTHLPLYGRTYLGWIPGIEAMSWAVLRYAHNKADLTLCTSPQMQQQLKDNGIERVDVWRKGIDVERFNPKFACKEMRSRLTDGHPEDPLIIYVGRLGAEKRLRDIKGVLER 642
            F    ++L+KAGD VEILTTDD  D PES L FPI  T GFRF LYNQ    L+     KG  M+ R +PD++HVT PGF+ L +L YAR F++P++FSYHTHLP Y   YLGW+PGIE  +W  LR+  N+ADLTL TS  M+ QL ++G+ R++VWRKGID + FNP F   EMR+RLTDGHPEDPL+IYVGRLGAEK L+ IK VL +
Sbjct:  108 FKEALKYLAKAGDNVEILTTDDVPDAPESFLGFPINYTKGFRFPLYNQIV--LSADHEGKGKEMLGRRRPDLLHVTCPGFITLAALVYARMFKLPLVFSYHTHLPHYAIQYLGWVPGIEDAAWTALRFVLNRADLTLVTSGPMRDQLAEHGVRRLEVWRKGIDTDVFNPAFKSAEMRARLTDGHPEDPLLIYVGRLGAEKNLKLIKDVLAK 316          
BLAST of mRNA_Ecto-sp13_S_contig17859.5431.1 vs. uniprot
Match: A0A7S2I8U8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I8U8_9STRA)

HSP 1 Score: 254 bits (649), Expect = 2.100e-79
Identity = 120/214 (56.07%), Postives = 164/214 (76.64%), Query Frame = 1
Query:   10 FSTLQRFLSKAGDEVEILTTD---DKEDRPESHLDFPITTTSGFRFILYNQACARLNVVVHRKGWAMIDRMKPDIIHVTSPGFLVLPSLFYARFFRVPMLFSYHTHLPLYGRTYLGWIPGIEAMSWAVLRYAHNKADLTLCTSPQMQQQLKDNGIERVDVWRKGIDVERFNPKFACKEMRSRLTDGHPEDPLIIYVGRLGAEKRLRDIKGVLER 642
            F  + ++L+KAGD+VE+LT D   D ++ P+    +PI  T GF F LYN     +++    KG  +++R++PD+IHVTSPGF+V  ++FYAR  R+P+L SYHTHLP YG+ YLG+IPGIE  +W +LRYAH++ADLTL TSPQM+ +L  NGI RVDVWRKGID  RF+PKF  +EMR++++DG+P+D L++YVGRLGAEKRL+DI+ VLER
Sbjct:  115 FKYMLQYLAKAGDKVEVLTVDSQTDPKELPKESFGYPIEHTMGFTFPLYNSISLTVDLP-ELKGAKILERLRPDLIHVTSPGFIVYAAIFYARVMRIPLLMSYHTHLPSYGKNYLGFIPGIEEFAWWLLRYAHSRADLTLVTSPQMRDELVANGIPRVDVWRKGIDTVRFDPKFKDEEMRNKMSDGNPDDFLMVYVGRLGAEKRLKDIRAVLER 327          
BLAST of mRNA_Ecto-sp13_S_contig17859.5431.1 vs. uniprot
Match: A0A7S4JZT8_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JZT8_9STRA)

HSP 1 Score: 254 bits (650), Expect = 2.150e-79
Identity = 124/214 (57.94%), Postives = 162/214 (75.70%), Query Frame = 1
Query:   10 FSTLQRFLSKAGDEVEILTTDDK---EDRPESHLDFPITTTSGFRFILYNQACARLNVVVHRKGWAMIDRMKPDIIHVTSPGFLVLPSLFYARFFRVPMLFSYHTHLPLYGRTYLGWIPGIEAMSWAVLRYAHNKADLTLCTSPQMQQQLKDNGIERVDVWRKGIDVERFNPKFACKEMRSRLTDGHPEDPLIIYVGRLGAEKRLRDIKGVLER 642
            F+ + R+LSKAGD+VEILTTD+K   E+ P+    + I  T GF F LYN     +++    KG  +I+++KPD+IHVTSPGFL+  ++FYAR  RVP++ SYHTHLP YG+ YLG+IPGIE  +W +LR+AH +ADLTL TSPQM+ +L  NGI RVDVWRKGID  RF+PKF  ++ R  +TDG+P+D L++YVGRLGAEKRL+DIK VLER
Sbjct:   89 FNEMLRYLSKAGDKVEILTTDNKTPAEELPKERFGYEIHHTQGFTFPLYNHITLTVDLP-EIKGIKLIEKLKPDLIHVTSPGFLLYAAVFYARVMRVPLVMSYHTHLPSYGKNYLGFIPGIEEFAWFLLRWAHTRADLTLVTSPQMRDELVANGIPRVDVWRKGIDTVRFDPKFKSQKWRETMTDGNPDDFLMVYVGRLGAEKRLKDIKAVLER 301          
BLAST of mRNA_Ecto-sp13_S_contig17859.5431.1 vs. uniprot
Match: K0SPG6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SPG6_THAOC)

HSP 1 Score: 254 bits (648), Expect = 3.050e-79
Identity = 122/215 (56.74%), Postives = 160/215 (74.42%), Query Frame = 1
Query:   10 FSTLQRFLSKAGDEVEILTTD---DKEDRPESHLDFPITTTSGFRFILYNQACARLNVVVHRKGWAMIDRMKPDIIHVTSPGFLVLPSLFYARFFRVPMLFSYHTHLPLYGRTYLGWIPGIEAMSWAVLRYAHNKADLTLCTSPQMQQQLKDNGIERVDVWRKGIDVERFNPKFACKEMRS-RLTDGHPEDPLIIYVGRLGAEKRLRDIKGVLER 642
            F  + R+LSKAGD V+ILT D    K++ PE    + I  T GF F LY+      ++    KG  M++R +PD+IHVTSPGF+V   LFYAR  R+P+L SYHTHLPLYGR Y GW PG+E  SWA+LR+AH +ADLTL TSPQM++++++NGI RV+VWRKGID  RF+PKF  +E RS R++DG+P+D L++YVGRLGAEKRL+DIK +LE+
Sbjct:   82 FKEMLRYLSKAGDNVDILTVDAKTPKDELPEESFGYKIEHTQGFVFPLYDHISLTFDLP-EMKGAKMMERRRPDLIHVTSPGFMVFAGLFYARVMRIPLLLSYHTHLPLYGRNYCGWFPGVEEFSWALLRFAHTRADLTLVTSPQMKEEMEENGIPRVEVWRKGIDTVRFDPKFRSEEFRSERMSDGNPDDFLMVYVGRLGAEKRLKDIKPMLEQ 295          
BLAST of mRNA_Ecto-sp13_S_contig17859.5431.1 vs. uniprot
Match: A0A835ZJ95_9STRA (Glycosyl transferase, group 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ95_9STRA)

HSP 1 Score: 251 bits (642), Expect = 1.630e-78
Identity = 115/211 (54.50%), Postives = 152/211 (72.04%), Query Frame = 1
Query:   10 FSTLQRFLSKAGDEVEILTTDDKEDRPESHLDFPITTTSGFRFILYNQACARLNVVVHRKGWAMIDRMKPDIIHVTSPGFLVLPSLFYARFFRVPMLFSYHTHLPLYGRTYLGWIPGIEAMSWAVLRYAHNKADLTLCTSPQMQQQLKDNGIERVDVWRKGIDVERFNPKFACKEMRSRLTDGHPEDPLIIYVGRLGAEKRLRDIKGVLER 642
            F  + +++ KAGD   I+TTDD  D P S L +PI  T GFR  +Y       +  +   GW++I+++KPD++HVTSPGF+   +L YAR FRVP++FSYHTHLP+Y +TY  W P IE +++ +LR+ HN+ADLTL TSPQM+  L+  G+ERVDVWRKGID ERFNP F   EMR+RL  G PE PL+IYVGRLG+EKRLR+I  V++R
Sbjct:   50 FKEMLKYIHKAGDSAAIVTTDDSPDAPSSFLGYPIANTKGFRCPVYKHIVLTFDTEL--VGWSVIEKLKPDVLHVTSPGFINFAALLYARIFRVPLVFSYHTHLPVYAKTYWEWFPRIEELAYFLLRFVHNRADLTLVTSPQMKDVLESQGVERVDVWRKGIDTERFNPSFKSPEMRARLAGGRPEAPLLIYVGRLGSEKRLREIATVMDR 258          
BLAST of mRNA_Ecto-sp13_S_contig17859.5431.1 vs. uniprot
Match: B8CGB9_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CGB9_THAPS)

HSP 1 Score: 248 bits (633), Expect = 2.160e-78
Identity = 118/214 (55.14%), Postives = 159/214 (74.30%), Query Frame = 1
Query:   10 FSTLQRFLSKAGDEVEILTTDDK---EDRPESHLDFPITTTSGFRFILYNQACARLNVVVHRKGWAMIDRMKPDIIHVTSPGFLVLPSLFYARFFRVPMLFSYHTHLPLYGRTYLGWIPGIEAMSWAVLRYAHNKADLTLCTSPQMQQQLKDNGIERVDVWRKGIDVERFNPKFACKEMRSRLTDGHPEDPLIIYVGRLGAEKRLRDIKGVLER 642
            F  + R+LSKAGD V+ILT D K   E+ P+    + I  T GF F LYN     +++    KG  M++R +PD+IHVTSPGF++   LFYAR  R+P+L SYHTHLPLYGR YLG+IPGIE  SW ++R+AH++ADLTL TSPQM+++++ NG+ RV+VWRKGID  RF+PK+  +EMR ++TDG+  D L++YVGRLG EKRL+DI+ VLE+
Sbjct:   17 FKEMLRYLSKAGDNVDILTVDSKTPKEELPKEAFGYSIEHTQGFVFPLYNHISLTVDLP-EMKGAKMMERRRPDLIHVTSPGFMLYAGLFYARVMRIPLLLSYHTHLPLYGRNYLGFIPGIEEFSWGLIRFAHSRADLTLVTSPQMKEEMEANGVPRVEVWRKGIDTVRFHPKYKSEEMRRKMTDGNEGDFLMVYVGRLGGEKRLKDIRPVLEQ 229          
BLAST of mRNA_Ecto-sp13_S_contig17859.5431.1 vs. uniprot
Match: A0A7S2YAZ2_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YAZ2_9STRA)

HSP 1 Score: 252 bits (644), Expect = 3.540e-78
Identity = 117/214 (54.67%), Postives = 162/214 (75.70%), Query Frame = 1
Query:   10 FSTLQRFLSKAGDEVEILTTDDKE---DRPESHLDFPITTTSGFRFILYNQACARLNVVVHRKGWAMIDRMKPDIIHVTSPGFLVLPSLFYARFFRVPMLFSYHTHLPLYGRTYLGWIPGIEAMSWAVLRYAHNKADLTLCTSPQMQQQLKDNGIERVDVWRKGIDVERFNPKFACKEMRSRLTDGHPEDPLIIYVGRLGAEKRLRDIKGVLER 642
            F  + +F+ KAGD+V+ILT D K    + P+ +L +P+  T GF F LY Q    +++    KG  +++R++PD+IHVTSPGFLV  ++FYAR   VP++ SYHTHLP+Y   YLG+IPG   +SW++LR+ H++ADLTL TSPQM+ +L +NGI RVDVWRKGID ERF+PKF  +EMR+++TDGHP+D L++YVGRLGAEKRL+DIK +L +
Sbjct:  106 FKEMLKFMKKAGDDVDILTVDAKTPAAELPDEYLGYPVRHTQGFTFPLYRQISLTIDLP-EMKGARILERLRPDLIHVTSPGFLVYTAIFYARVMCVPLVMSYHTHLPVYADNYLGFIPGASKISWSLLRWVHSRADLTLVTSPQMRDELLENGIPRVDVWRKGIDTERFDPKFRSQEMRAKMTDGHPDDFLMVYVGRLGAEKRLKDIKAMLAK 318          
BLAST of mRNA_Ecto-sp13_S_contig17859.5431.1 vs. uniprot
Match: A0A7S3Z520_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z520_9EUKA)

HSP 1 Score: 251 bits (642), Expect = 3.570e-78
Identity = 112/210 (53.33%), Postives = 158/210 (75.24%), Query Frame = 1
Query:   10 FSTLQRFLSKAGDEVEILTTDDKEDRPESHLDFPITTTSGFRFILYNQACARLNVVVHRKGWAMIDRMKPDIIHVTSPGFLVLPSLFYARFFRVPMLFSYHTHLPLYGRTYLGWIPGIEAMSWAVLRYAHNKADLTLCTSPQMQQQLKDNGIERVDVWRKGIDVERFNPKFACKEMRSRLTDGHPEDPLIIYVGRLGAEKRLRDIKGVLE 639
            F  + ++L KAGD+V ++TTD  ++ P S L FPI TTSGF F LY       +++  RKGWA++ + +PD++H T+PGF+ L S+ YA+ FR+P++ SYHTHLP+Y R YLG+IPGI  ++W  L    N+ADL L TSPQ++++L+DNG+  VDVWRKG+DV+ FNP +  ++MR+ LTDG+PEDPL+IYVGRLGAEK+L+ +K VLE
Sbjct:  128 FKEMLKYLDKAGDDVTVMTTDSNKNPPSSFLSFPIETTSGFVFPLYPDITVSADLL-QRKGWAILKKSRPDVLHATAPGFMCLTSIAYAKLFRLPLVISYHTHLPIYARDYLGFIPGIVELAWFALNVVLNQADLVLTTSPQLKKELEDNGVNNVDVWRKGVDVDVFNPSYRTEQMRNTLTDGNPEDPLMIYVGRLGAEKKLKALKSVLE 336          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17859.5431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JM44_9PHAE1.650e-14091.71GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A7S2XXM0_9STRA1.450e-7955.45Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6T5MMG1_HETAK2.020e-7958.77Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2I8U8_9STRA2.100e-7956.07Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S4JZT8_9STRA2.150e-7957.94Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
K0SPG6_THAOC3.050e-7956.74Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A835ZJ95_9STRA1.630e-7854.50Glycosyl transferase, group 1 n=1 Tax=Tribonema mi... [more]
B8CGB9_THAPS2.160e-7855.14Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S2YAZ2_9STRA3.540e-7854.67Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S3Z520_9EUKA3.570e-7853.33Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17859contigEcto-sp13_S_contig17859:1035..2834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score261.5
Seed ortholog evalue3.4e-67
Seed eggNOG ortholog227086.JGI_V11_49796
Preferred nameSQD2
Model size645
KEGG rclassRC00005,RC00059
KEGG koko:K06119
KEGG ReactionR06867
KEGG Pathwayko00561,ko01100,map00561,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000030,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006629,GO:0006643,GO:0006664,GO:0006790,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0008194,GO:0008610,GO:0009058,GO:0009247,GO:0009267,GO:0009507,GO:0009526,GO:0009536,GO:0009605,GO:0009941,GO:0009987,GO:0009991,GO:0016036,GO:0016740,GO:0016757,GO:0016758,GO:0031667,GO:0031668,GO:0031669,GO:0031967,GO:0031975,GO:0033554,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046467,GO:0046505,GO:0046506,GO:0050896,GO:0051716,GO:0070085,GO:0071496,GO:0071704,GO:0097502,GO:1901135,GO:1901137,GO:1901576,GO:1903509
Exons3
EggNOG free text desc.phosphatidylinositol N-acetylglucosaminyltransferase activity
EggNOG OGsCOG0438@1,KOG1111@2759
Cds size645
COG Functional cat.M
CAZyGT4
BiGG ReactioniRC1080.CRv4_Au5_s1_g1736_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462924.856036-CDS-Ecto-sp13_S_contig17859:1034..12171681462924.856036-CDS-Ecto-sp13_S_contig17859:1034..1217Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17859 1035..1217 +
1681462924.8703966-CDS-Ecto-sp13_S_contig17859:1852..21731681462924.8703966-CDS-Ecto-sp13_S_contig17859:1852..2173Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17859 1853..2173 +
1681462924.8784857-CDS-Ecto-sp13_S_contig17859:2693..28341681462924.8784857-CDS-Ecto-sp13_S_contig17859:2693..2834Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17859 2694..2834 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17859.5431.1prot_Ecto-sp13_S_contig17859.5431.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17859 1035..2834 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17859.5431.1

>prot_Ecto-sp13_S_contig17859.5431.1 ID=prot_Ecto-sp13_S_contig17859.5431.1|Name=mRNA_Ecto-sp13_S_contig17859.5431.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=215bp
MFCFSTLQRFLSKAGDEVEILTTDDKEDRPESHLDFPITTTSGFRFILYN
QACARLNVVVHRKGWAMIDRMKPDIIHVTSPGFLVLPSLFYARFFRVPML
FSYHTHLPLYGRTYLGWIPGIEAMSWAVLRYAHNKADLTLCTSPQMQQQL
KDNGIERVDVWRKGIDVERFNPKFACKEMRSRLTDGHPEDPLIIYVGRLG
AEKRLRDIKGVLER*
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mRNA from alignment at Ecto-sp13_S_contig17859:1035..2834+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17859.5431.1 ID=mRNA_Ecto-sp13_S_contig17859.5431.1|Name=mRNA_Ecto-sp13_S_contig17859.5431.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1800bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17859:1035..2834+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTTGCTTTTCGACGTTGCAAAGGTTCCTGTCCAAGGCCGGGGACGA GGTGGAGATTTTGACGACAGACGACAAGGAGGACAGGCCGGAGTCGCACC TCGACTTCCCTATCACAACAACCTCCGGGTTCCGCTTCATCTTGTACAAC CAGGCATGTGCAAGGTTGAATGTGGTGGTGCATGTATCCAGAAACGTTTT GCTCTCATCAGTCGAAACCAGCAAAGGGGGAATTGTAGTATTGAGAGTAG TGTGTATCATGGCTGTTTTAGTCATTGTGGTGGGTGCGGTTCTTTTCGGA AGCAGGTGGGGATCTTTTTCTTCGGTCGTGCTTGCTGTTGTTGTCGTGGT GGTTTGTCTCTCTCTCCCAGAGAGTTCTTTCTAGGAAGTATACAGAACAT CGCAGAGAGACACGAGATGCTGCTCATAGGGATTTTTTTCAAGTCTTATT TGCAGTGAAGGTTGAGGAAAACCATCTGGACATTGGACTGAAGATATCGC TGAGCAACCAGCGTCTCTCTACTGTGCCCCCCGTGCGCCAATGTGTCGCT TCGACGCGGCCAAGCGCATCACTCTGACGGTTACCGGCCCGCCCCATACT TCTACGGGGACAGTGCCCTGTCCTCTCGAGGACGCCTGGTTAACTTGCAA CCGCAAAGGCATGCAAAACATGAGAACCTCCGCCCCCCCCCCCCCCCCCC CCCCACCCCCCCCCCGCCTCGTCCTTCAACGTTGGCGTCGTCGTCGGCAT TATTCTCGCATCGCAACTGCTGCGAAATGCCCCCCGGCGAGCAGATCATG CTCACCTTCGACTGGGAGCGCAAGGGCTGGGCAATGATCGACCGCATGAA GCCGGACATCATCCACGTCACTTCCCCGGGCTTCTTGGTTCTCCCGTCCC TCTTCTACGCCCGCTTCTTCAGAGTGCCCATGCTCTTCTCGTACCACACC CACCTGCCTCTCTACGGCCGGACGTACCTGGGCTGGATCCCGGGCATCGA GGCCATGAGCTGGGCGGTGCTGCGGTACGCCCACAACAAGGCGGACCTGA CCCTGTGCACGAGCCCGCAGATGCAGCAGCAGCTGAAGGACAACGGCATC GAACGCGTGGACGTCTGGCGCAAGGGGATCGATGTGGAGGTGGGTGGGCC GGGGGTGGCGGGGGACTCCATGTTTTGCATGCCTAAGTTGTTAGGCCGTT GAGCACGCGTCCTCGAGTGTCATGGCTTGCTTGTAGGCCGGGTATGGACG TCTGGTGTAAGGAAATCGATGTAGAGGTGGGTAGGTCTTGGTGTGGGGAG GTGGGATGTAGATCGTGCTAGTTACCCTTTGCTCTGAGGGGAGGCGAGAG ACGGCGTTGAGCAGCATTGTTCAAAGGTGTGTTCGGTTGCTCGCAAACGT GGAATGGTCCATCCGCCTATCGTATGCAAGCGCGGAGTGTCTCCTATGCA AGGTACGAACCGAGTGTTGTGTGGCTGAGAGCTAGCTTGGCCAACCGCTA CTCGTGGCCACTGCCCGTACAGGCGGTAGTGATAACAGCTGTAGATGCCA AGCCCTGCTCGTGAACATACTCTTGCCGCCCGGCGTTTACCTTCGATGTC GCTTGATCGAAACCCTCCTTCGTCCCGTCCCCTCTTCGCGTCCCCCCCCC CCTCCGTAGAGGTTTAACCCGAAGTTCGCATGTAAGGAGATGCGGTCGAG GCTGACGGACGGCCACCCGGAGGACCCCCTCATCATCTACGTCGGCAGGC TTGGGGCGGAGAAGCGCTTGAGGGATATTAAAGGAGTTCTCGAGAGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17859:1035..2834+

>mRNA_Ecto-sp13_S_contig17859.5431.1 ID=mRNA_Ecto-sp13_S_contig17859.5431.1|Name=mRNA_Ecto-sp13_S_contig17859.5431.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=645bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17859:1035..2834+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTTGCTTTTCGACGTTGCAAAGGTTCCTGTCCAAGGCCGGGGACGA
GGTGGAGATTTTGACGACAGACGACAAGGAGGACAGGCCGGAGTCGCACC
TCGACTTCCCTATCACAACAACCTCCGGGTTCCGCTTCATCTTGTACAAC
CAGGCATGTGCAAGGTTGAATGTGGTGGTGCATCGCAAGGGCTGGGCAAT
GATCGACCGCATGAAGCCGGACATCATCCACGTCACTTCCCCGGGCTTCT
TGGTTCTCCCGTCCCTCTTCTACGCCCGCTTCTTCAGAGTGCCCATGCTC
TTCTCGTACCACACCCACCTGCCTCTCTACGGCCGGACGTACCTGGGCTG
GATCCCGGGCATCGAGGCCATGAGCTGGGCGGTGCTGCGGTACGCCCACA
ACAAGGCGGACCTGACCCTGTGCACGAGCCCGCAGATGCAGCAGCAGCTG
AAGGACAACGGCATCGAACGCGTGGACGTCTGGCGCAAGGGGATCGATGT
GGAGAGGTTTAACCCGAAGTTCGCATGTAAGGAGATGCGGTCGAGGCTGA
CGGACGGCCACCCGGAGGACCCCCTCATCATCTACGTCGGCAGGCTTGGG
GCGGAGAAGCGCTTGAGGGATATTAAAGGAGTTCTCGAGAGGTAG
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