mRNA_Ecto-sp13_S_contig17788.5394.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17788.5394.1
Unique NamemRNA_Ecto-sp13_S_contig17788.5394.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17788.5394.1 vs. uniprot
Match: D8LPN2_ECTSI (Cir_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPN2_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 3.350e-24
Identity = 62/77 (80.52%), Postives = 63/77 (81.82%), Query Frame = -3 
Query:  308 MSGRLIILPKKSWHPGKRENIEKVLRDERLAAEEAAAARERAREITQEGIVETLTKKR*EGTWIVQEEHNPQPVPRS 538
            MSGRLIILPKKSWHPGKRENIEKVLRDERLAAEEAAAARERAREITQEGIVETLTKKR     I  E +     P S
Sbjct:    1 MSGRLIILPKKSWHPGKRENIEKVLRDERLAAEEAAAARERAREITQEGIVETLTKKRSASETIEGEANAASGTPAS 77
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BLAST of mRNA_Ecto-sp13_S_contig17788.5394.1 vs. uniprot
Match: A0A836CIP7_9STRA (Cir_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIP7_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 6.640e-9
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = -3 
Query:  365 MSGRLIILPKKSWHPGKRENIEKVLRDERLAAEEAAAARERAREITQEGIVETLTKKR 538
            MSGRLIILPKKSWH  +R+N+E+V RDERLAAE    A E+A+   QE  VETL +KR
Sbjct:    1 MSGRLIILPKKSWHVWRRDNLERVKRDERLAAEAQEEADEKAQRADQEIRVETLKRKR 58
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BLAST of mRNA_Ecto-sp13_S_contig17788.5394.1 vs. uniprot
Match: A0A7S3XLM5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLM5_HETAK)

HSP 1 Score: 53.5 bits (127), Expect = 2.680e-5
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = -3 
Query:  395 MSGRLIILPKKSWHPGKRENIEKVLRDERLAAEEAAAARERAREITQE 538
            MSGRLIIL  KSWH   ++NIEKV +DERLAAEE    +E+ R + QE
Sbjct:    1 MSGRLIILRHKSWHVWNQDNIEKVKKDERLAAEEEEKNKEKQRLVDQE 48
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17788.5394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LPN2_ECTSI3.350e-2480.52Cir_N domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A836CIP7_9STRA6.640e-963.79Cir_N domain-containing protein n=1 Tax=Tribonema ... [more]
A0A7S3XLM5_HETAK2.680e-560.42Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17788contigEcto-sp13_S_contig17788:1780..2835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1056
Hectar predicted targeting categoryother localisation
Exons1
Cds size555
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462921.8446226-UTR-Ecto-sp13_S_contig17788:1779..18791681462921.8446226-UTR-Ecto-sp13_S_contig17788:1779..1879Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17788 1780..1879 +
1681462921.8621008-UTR-Ecto-sp13_S_contig17788:2434..28351681462921.8621008-UTR-Ecto-sp13_S_contig17788:2434..2835Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17788 2435..2835 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462921.8536906-CDS-Ecto-sp13_S_contig17788:1879..24341681462921.8536906-CDS-Ecto-sp13_S_contig17788:1879..2434Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17788 1880..2434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17788.5394.1prot_Ecto-sp13_S_contig17788.5394.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17788 1880..2434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17788.5394.1

>prot_Ecto-sp13_S_contig17788.5394.1 ID=prot_Ecto-sp13_S_contig17788.5394.1|Name=mRNA_Ecto-sp13_S_contig17788.5394.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=185bp
MVHGRKGGYINSAHVRVVWRSQTGEPLVPKYSYKCNSLFPAQETYCSGIL
QRDAEHVHTAQYRALLIEDGTGYGLWVVLLLYNPCALLPFLCQGFHNSFL
GNFSRPLPSRCCLLGSQPLISKDFLDILPFSGMPAFLWQYYQTSAHCLGC
CWYPEDETRQTPPPAVPRGTQIPAGVAVNNERNK*
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mRNA from alignment at Ecto-sp13_S_contig17788:1780..2835+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17788.5394.1 ID=mRNA_Ecto-sp13_S_contig17788.5394.1|Name=mRNA_Ecto-sp13_S_contig17788.5394.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1056bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17788:1780..2835+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTACGTCAATTTCCCCCCGGGGGGGTTGGTTTCAGAAAAAAAACGATCC
CCTCACCGGGGGGAAAACTAAAACTCCGTAGTTTACGGTGTGCAGGATAT
ATGGTACACGGGAGAAAAGGGGGATACATCAACTCTGCCCACGTACGTGT
GGTATGGCGATCACAAACCGGGGAACCGCTTGTCCCCAAGTATTCGTACA
AGTGCAACAGTCTGTTTCCAGCACAGGAAACCTACTGCAGTGGCATCCTA
CAACGGGACGCTGAGCATGTTCACACGGCTCAGTACAGAGCGCTTCTAAT
CGAAGACGGAACGGGGTACGGGTTGTGGGTTGTGCTCCTCCTGTACAATC
CATGTGCCCTCTTACCTTTTCTTTGTCAGGGTTTCCACAATTCCTTCCTG
GGTAATTTCTCTCGCCCTCTCCCGAGCCGCTGCTGCCTCCTCGGCAGCCA
GCCTCTCATCTCGAAGGACTTTCTCGATATTCTCCCGTTTTCCGGGATGC
CAGCTTTTCTTTGGCAATATTATCAAACGTCCGCTCATTGTCTTGGTTGT
TGTTGGTACCCAGAGGATGAGACGAGACAGACGCCACCTCCTGCTGTACC
TCGCGGGACACAAATCCCGGCGGGTGTAGCGGTCAACAATGAACGCAACA
AATAAACTCGAGCTTACTTTGGCAGACGAGAGAGAGGGAGACAAGAGAAA
GGGACAGAGACAGAGAGTGAGACAGAGGCACACTGAGCGAGAGAGAGACA
AAGACACAGACAGAGACAGGGAGTCAAATACTAATATTCAGAGCTGGCGA
GACGCGCACTCGCAATTACTCGACGCGCTGTTCATAGTCTTATCGCCCGT
CCGCGAAAAGCCGCCCTTGGTACACGTGCTGAACACAAGCGGGTTTACGA
GTTTACAGGTGGCATATTGTACACCGTCGGTACAGCAGTCTCGCTGTCCC
GCCGAAGTTGGTATGCTGGGCTCTCCTCAGATTTTGTGCAGATTGATGTT
TCTTCGTCCTGGTCAATGCTCTCACCTTCAGCTCGCCTGAAGAGCTGGGT
TGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17788:1780..2835+

>mRNA_Ecto-sp13_S_contig17788.5394.1 ID=mRNA_Ecto-sp13_S_contig17788.5394.1|Name=mRNA_Ecto-sp13_S_contig17788.5394.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=555bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17788:1780..2835+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTACACGGGAGAAAAGGGGGATACATCAACTCTGCCCACGTACGTGT
GGTATGGCGATCACAAACCGGGGAACCGCTTGTCCCCAAGTATTCGTACA
AGTGCAACAGTCTGTTTCCAGCACAGGAAACCTACTGCAGTGGCATCCTA
CAACGGGACGCTGAGCATGTTCACACGGCTCAGTACAGAGCGCTTCTAAT
CGAAGACGGAACGGGGTACGGGTTGTGGGTTGTGCTCCTCCTGTACAATC
CATGTGCCCTCTTACCTTTTCTTTGTCAGGGTTTCCACAATTCCTTCCTG
GGTAATTTCTCTCGCCCTCTCCCGAGCCGCTGCTGCCTCCTCGGCAGCCA
GCCTCTCATCTCGAAGGACTTTCTCGATATTCTCCCGTTTTCCGGGATGC
CAGCTTTTCTTTGGCAATATTATCAAACGTCCGCTCATTGTCTTGGTTGT
TGTTGGTACCCAGAGGATGAGACGAGACAGACGCCACCTCCTGCTGTACC
TCGCGGGACACAAATCCCGGCGGGTGTAGCGGTCAACAATGAACGCAACA
AATAA
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