mRNA_Ecto-sp13_S_contig17782.5391.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17782.5391.1
Unique NamemRNA_Ecto-sp13_S_contig17782.5391.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17782.5391.1 vs. uniprot
Match: D7FVR9_ECTSI (Heme-binding family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVR9_ECTSI)

HSP 1 Score: 335 bits (859), Expect = 6.360e-112
Identity = 170/173 (98.27%), Postives = 170/173 (98.27%), Query Frame = 1
Query:  505 MEGIAENLYSIKNTARELTPQKLRQGLQTAAAETENIFSRTPSGLYSPSYSLEDAREGFEIRRYASYAVCSAQMDADTARESDQRDDDNTGVTDGSGEGFNTLAGYLFGDNKQEVAMDMTTPVNIDVTSTGRTMSFVMPKDVPAEEAPTPRNPRVNVRDVAEGEVLAVREFPG 1023
            MEGIAENLYSIK TARELTPQKLRQGLQTAAAETENIFSRTPSGLYSPSYSLEDAREGFEIRRYASYAVCSAQMDAD ARESDQRDDD TGVTDGSGEGFNTLAGYLFGDNKQEVAMDMTTPVNIDVTSTGRTMSFVMPKDVPAEEAPTPRNPRVNVRDVAEGEVLAVREFPG
Sbjct:    1 MEGIAENLYSIKKTARELTPQKLRQGLQTAAAETENIFSRTPSGLYSPSYSLEDAREGFEIRRYASYAVCSAQMDADAARESDQRDDDRTGVTDGSGEGFNTLAGYLFGDNKQEVAMDMTTPVNIDVTSTGRTMSFVMPKDVPAEEAPTPRNPRVNVRDVAEGEVLAVREFPG 173          
BLAST of mRNA_Ecto-sp13_S_contig17782.5391.1 vs. uniprot
Match: A0A6V1RB38_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RB38_HETAK)

HSP 1 Score: 125 bits (315), Expect = 9.180e-29
Identity = 96/279 (34.41%), Postives = 129/279 (46.24%), Query Frame = 1
Query:  205 PWGSLVETEIIATHLLKCLPEIARDVSDAARKNELVSGIVLGKGTEA----RSTVDGLKAVNRQLRQDILPKALEAAPRIASAVPRPGTNTTGSSTTPKRRTGQMEGIAENLYSIKNTARELTPQKLRQGLQTAAAETENIFSRTPSGLYSPSYSLEDAREGFEIRRYASYAVCSAQMDADTARESDQRDDDNTGVTDGSGEGFNTLAGYLFGDNKQEVAMDMTTPVNID-VTSTGRTMSFVMPKDVPAEEAPTPR-NPRVNVRDVAEGEVLAVREFPG 1023
            P  SL E + +   LLK  PEI   V DA  ++  V  ++  KG          +    AV RQ+ +DILP+  E  PR+A  +              +RR G                           +Q+   E++NI+SRTP GL +P YS+  A   FEIR Y +YA  +  MD      ++  DD        SG GFNTLAGYLFGDN+ E  M+MT PV I      GRTM+FV+P     E AP P+ +  + V     G ++A  EFPG
Sbjct:   61 PRASLSEKQTLLQDLLKQSPEIRDAVLDAIDQDS-VEKLLPPKGQSRFEPFAELIRATDAVRRQVVRDILPRVAEDGPRVAERLRAELXXXXADPEKARRRMGXXXXXXXXXXXX---------XXXXXAVQSIITESKNIYSRTPEGLETPKYSVVQATPAFEIRSYEAYATATTAMDG-----AESMDDPFE-----SGRGFNTLAGYLFGDNEAEEPMEMTIPVAISRAADGGRTMAFVLPSQYTPESAPAPKADANITVAQTKAGMMVAAVEFPG 319          
BLAST of mRNA_Ecto-sp13_S_contig17782.5391.1 vs. uniprot
Match: A0A7S0DGY6_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DGY6_9EUKA)

HSP 1 Score: 119 bits (299), Expect = 1.700e-27
Identity = 90/258 (34.88%), Postives = 134/258 (51.94%), Query Frame = 1
Query:  265 EIARDVSDAA-RKNELVSG--IVLGKGTEARSTVDGLKAVNRQLRQDILPKALEAAPRIASAVPRPGTNTTGSSTTPKRRTGQMEGIAENLYSIKNTARELTPQKLRQGLQTAAAETENIFSRTPSGLYSPSYSLEDAREGFEIRRYASYAVCSAQMDADTARESDQRDDDNTGVTDGSGEGFNTLAGYLFGDNKQEVAMDMTTPVNIDVTSTGRT-MSFVMPKDVPAEEAPTPR-NPRVNVRDVAEGEVLAVREFPG 1023
            E  R   DAA R  +L     I+  KGTEAR  VDGL AV RQ+  DI+P+  ++  R        G     SS+ P     ++    +   +         P KL+Q +  A  E +N+F RTP+GL  P+YS+    + +EIR Y  Y + +  M + +        D    V   SG  FNTLAGY+FG+N+++ AM MT PV + V   G + M+FV+P +  ++ +P P  +  + ++ V  G++LAVREFPG
Sbjct:   28 ESLRSAVDAAIRDRDLKKSKDILYPKGTEARKLVDGLDAVRRQVVTDIIPEITKSGGR--------GLVPPQSSSAPSFNASKIISQLQEYQA--------DPNKLKQSITDAQEEAKNVFRRTPTGLEMPTYSVLVQGDDYEIREYEPYTIAATPMTSSS--------DVGMSVAK-SGNAFNTLAGYIFGNNQEKQAMSMTAPVEMTVGDKGASDMAFVLPSNF-SDSSPAPMADDDITIKKVP-GQILAVREFPG 258          
BLAST of mRNA_Ecto-sp13_S_contig17782.5391.1 vs. uniprot
Match: A0A7S3E9Q7_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E9Q7_9RHOD)

HSP 1 Score: 116 bits (291), Expect = 3.780e-26
Identity = 82/226 (36.28%), Postives = 119/226 (52.65%), Query Frame = 1
Query:  346 RSTVDGLKAVNRQLRQDILPKALEAAPRIASAVPRPGTNTTGSSTTPKRRTGQMEGIAENLYSIKNTARELTPQKLRQGLQTAAAETENIFSRTPSGLYSPSYSLEDAREGFEIRRYASYAVCSAQMDADTARESDQRDDDNTGVTDGSGEGFNTLAGYLFGDNKQEVAMDMTTPVNIDVTSTGRTMSFVMPKDVPAEEAPTPRNPRVNVRDVAEGEVLAVREFPG 1023
            +S  DG++ V  Q+  DILP+  + AP IAS V +  +     +T PK     +E I E  +S  N+A    P+ LR+       E  N+  +TP GL +P YS+  + E FE+R Y SY +    M         ++D         S  GFNTLAGY+FG N++   + MTTPV +D T    TMSFV+P     + AP P +P+V V++ A  ++ A +EFPG
Sbjct:   81 KSGADGVRPVLNQIVNDILPELPDKAPVIASKVLKDLSELP--TTIPKA----VEDIRE--FSQTNSAE--LPELLRR-------EAMNVMKKTPEGLETPDYSVVLSTEHFEVREYGSYVIAETTMPG-------KQDYSEAEAVQASANGFNTLAGYIFGGNEEGEKISMTTPVVMDRTDDISTMSFVLPSKYSMDSAPPPNSPKVTVKETAT-QLFACKEFPG 281          
BLAST of mRNA_Ecto-sp13_S_contig17782.5391.1 vs. uniprot
Match: A0A7S2G1D3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G1D3_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.110e-25
Identity = 101/326 (30.98%), Postives = 141/326 (43.25%), Query Frame = 1
Query:   58 AFVPSASTKHRGRXXXXXXXXXXXXXXXXXGDKTPSWRLEVDDLVKAASPWGSLVETEIIATHLLKCLPEIARDVSDAARKNELVSGIVLGKGTEARSTVDGLKAVNRQLRQDILPKALEAAPRIASAVPRPGTNTTGSSTTPKRRTGQMEGIAENLYSIKNTARELTPQKLRQGLQTAAAETEN-IFSRTPSGLYSPSYSLEDAREGFEIRRYASYAVCSAQMDADTARESDQRDDDNTGVTD--GSGEGFNTLAGYLFGDNKQEVAMDMTTPVNIDVTSTG-RTMSFVMPKDVPAEEAPTPRNPRVNVRDVAEGEVLAVREFPG 1023
            AF PS +  HR                    ++T +W+   + + K  SP  S  E +I+   L+    E+  D++ A          +L + ++AR  VDG +AV RQ+  DILP   E APR+      PG          K     +   AE                               + S  P GL SP Y++ D ++ FEIR YA Y+ C+A M                G  D  G+G  FNTLA Y+FG+N  + ++ MTTPV I  ++ G + MSFV+P  + A  AP P +PRV V DV    V AV EFPG
Sbjct:   23 AFAPSRANSHR------------FPTFLRVSEETLTWQ---EGIEKIFSPKSSQAERQILLQDLVARRTEVTDDITRAISNGTPEE--LLPQDSDARRAVDGARAVQRQVVDDILPAIAEEAPRV------PGNFV-------KNAPEIIASAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSSVPPGLQSPDYTVVDRQDAFEIRDYAPYSTCTAAM---------------AGSEDPFGAGASFNTLAEYIFGENDSKESLSMTTPVAISRSADGSQQMSFVLPGSLDASSAPAPISPRVIVSDVPTKRVAAV-EFPG 302          
BLAST of mRNA_Ecto-sp13_S_contig17782.5391.1 vs. uniprot
Match: A0A4D9DAF2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAF2_9STRA)

HSP 1 Score: 114 bits (285), Expect = 3.190e-24
Identity = 90/294 (30.61%), Postives = 140/294 (47.62%), Query Frame = 1
Query:  163 SWRLEVDDLVKAASPWGSLVETEIIATHLLKCLPEIARDVSDAARKNELVSGIVLGKGTEARSTVDGLKAVNRQLRQDILPKALEAAPRIASAVPRPGTNTTGSSTTPKRRTGQMEGIAENLY-SIKNTARELTPQKLRQGLQTAAAETENIFSRTPSGLYSPSYSLEDAREGFEIRRYASYAVCSAQMDADTARESDQRDDDNTGVTDGSGEGFNTLAGYLFGDNKQEVAMDMTTPVNIDVTSTGR------TMSFVMPKDVPAEEAPTPRNPRVNVRDVAEGEVLAVREFPG 1023
            SW+  ++ L+   SP   + + +++   ++   PEI +DV +A R+   V G++           DG+KAV RQL +DI+P+ L + P  A+ +                   +M  +A+  Y ++    +EL  + LR+      +E  N+F RTP GL +PS+ +     G+EIR Y  Y V   +M +  A+          G    +G  FNTLAGY+FG N+ +  M MTTPV I   +  R      +M F+M      E AP P + +V +   A  E LA REF G
Sbjct:  572 SWQESLELLM---SPTTGMAQRQVLFQDVVSRAPEIRKDVEEAIREGS-VDGLL----------TDGIKAVRRQLTEDIIPQ-LASEPEQAAKI----------------LLEEMPKLAQRSYENLPKNPKELA-ETLREVSTALPSEARNVFLRTPEGLETPSFQVLHEGHGYEIREYDPYTVAYTEMGSSDAKAESTGAGPVLGSPTMTGGAFNTLAGYIFGANEAKTNMAMTTPVEIRKDAQHRGAGEAYSMRFIMASPYTTETAPRPMDSKVRLTTTAR-ERLAAREFAG 832          
BLAST of mRNA_Ecto-sp13_S_contig17782.5391.1 vs. uniprot
Match: A0A7S3Z1V0_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z1V0_9EUKA)

HSP 1 Score: 111 bits (277), Expect = 1.380e-23
Identity = 91/264 (34.47%), Postives = 129/264 (48.86%), Query Frame = 1
Query:  259 LPEIARDVSDAA---RKNELVSGIVLGKGTEARSTVDGLKAVNRQLRQDILPKAL------EAAPRIASAVPRPGTNTTGSSTTPKRRTGQMEGIAENLYSIKNTARELTPQKLRQGLQTAAAETENIFSRTPSGLYSPSYSLEDAREGFEIRRYASYAVCSAQMDADTARESDQRDDDNTGVTDGSGEGFNTLAGYLFGDNKQEVAMDMTTPVNIDVTSTGRTMSFVMPKDVPAEEAPTPRNPRVNVRDVAEGEVLAVREFPG 1023
            L +  R  ++AA   R  E    I+   GTEAR  VDGL AV RQ+R+ ILP+        E   R   ++PR     + ++T  K  +G    I E    I+  A                  ++N+F RTP+GL  P+Y++  + EGFEIR Y  Y V +  M        D        VTD SG+ FNTLA Y+FG N+++ AM MT PV + +    + M+FV+P +  +E+ PTP             ++LAVREFPG
Sbjct:  137 LQDTLRSAAEAAIQKRDLEGAKNILYPTGTEARRVVDGLDAVQRQVRE-ILPELTKPDTLKELQTRTTDSLPRSFNPDSFNAT--KVISGLQSEIQELTQEIQ--AXXXXXXXXXXXXXXXXXXSKNVFRRTPTGLEMPNYTVLASGEGFEIREYDPYTVAATPMTTAAGAYGDALQS----VTD-SGKAFNTLASYIFGQNQEKTAMAMTAPVEMTLEPGVKEMAFVLPSEF-SEKTPTPEMEENITIKRMPSQILAVREFPG 389          
BLAST of mRNA_Ecto-sp13_S_contig17782.5391.1 vs. uniprot
Match: A0A7S0TMQ6_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TMQ6_HEMAN)

HSP 1 Score: 107 bits (266), Expect = 2.190e-22
Identity = 85/279 (30.47%), Postives = 130/279 (46.59%), Query Frame = 1
Query:  199 ASPWGSLVETEIIATHLLKCLPEIARDVSDAARKNELVSGIVLGKGTEARSTVDGLKAVNRQLRQDILPKALEAAPRIASAVPRPGTNTTGSSTTPKRRTGQMEG-IAENLYSIKNTARELT---PQKLRQGLQTAAAETENIFSRTPSGLYSPSYSLEDAREGFEIRRYASYAVCSAQMDADTARESDQRDDDNTGVTDGSGEGFNTLAGYLFGDNKQEVAMDMTTPVNIDVTSTGRTMSFVMPKDVPAEEAPTPRNPRVNVRDVAEGEVLAVREFPG 1023
            A+P+    +   + + L+    +IA  V+    +       +LG     +  +   + V RQLR DILP A E    +     R    ++ S   P+ +  +++G + + L  +  + +  T   PQKL + +   A E  N+F  TP GL  P Y++  A   FE+R Y ++ V    M               T  T   G  FNTLAG+LFGDN Q++AM MTTPV ++       MSFV+PK+   +  P PR+  V + +V      AVREF G
Sbjct:   88 ANPFTPPQDKPALLSDLIGMREDIAASVTKVLNRESKPEEELLGP--IGKRQLKAQETVRRQLRDDILPSARETLEEL-----RERARSSDSRPDPQEQFRRLQGLVTDRLDELTASGKPPTLPEPQKLARDI---AQEVRNVFQSTPEGLEQPPYTVSVANPEFEVREYEAFTVARRDMVGVKP---------GTNRTFAEGSSFNTLAGFLFGDNDQDMAMAMTTPVFVERGGGEEAMSFVIPKEKEGD-VPVPRDKTVRIEEVPAAR-YAVREFAG 345          
BLAST of mRNA_Ecto-sp13_S_contig17782.5391.1 vs. uniprot
Match: A0A6T7QSS0_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A6T7QSS0_9CRYP)

HSP 1 Score: 104 bits (259), Expect = 2.020e-21
Identity = 94/302 (31.13%), Postives = 133/302 (44.04%), Query Frame = 1
Query:  148 GDKTPSWRL----EVDDLV-KAASPWGSLVETEIIATHLLKCLPEIARDVSDAARKNELVSGIVLGKGTEARSTVDGLKAVNRQLRQDILPKALEAAPRIASAVPRPGTNTTGSSTTPKRRTGQMEGIAEN--LYSIKNTARELTPQKLRQG-LQTAAAETENIFSRTPSGLYSPSYSLEDAREGFEIRRYASYAVCSAQMDADTARESDQRDDDNTGVTDGSGEGFNTLAGYLFGDNKQEVAMDMTTPVNIDVTSTGRT--MSFVMPKDVPAEEAPTPRNPRVNVRDVAEGEVLAVREFPG 1023
            G + PS +     E  DL  K A P+ S  E  +I   L +   ++++ VSD          ++   G+  R  +   +AV RQ+ +DI+P A + A  +   V   G              G + G  +N  L +I +   E   +    G ++   AE  NIFS TP GL +PSYS+  +   +EIR Y+   V S  M A       +R +D        G  FN LA +LFG N ++ AM MTTPV   V   GRT  MSFV+P     +  P P           E   +A REFPG
Sbjct:   19 GSRLPSMKALEDEEWQDLAEKLADPFVSPFEKPMILAELARRREQVSQTVSDVLGGRRAQEALL---GSRGRKQLKAARAVARQVTEDIVPDARKQAEELLQEVRDKGV-------------GSLAGEIQNRILVAIDDATVEGMLKVPEAGSVEDIMAEVRNIFSETPEGLETPSYSVVRSSSEYEIRDYSPMLVASKAMSA-------ERQED--------GNAFNELASFLFGKNDRKEAMSMTTPVITAVDGEGRTRSMSFVIPSKYDLDSVPKPVGLSAVRMQQMEDSRVAAREFPG 289          
BLAST of mRNA_Ecto-sp13_S_contig17782.5391.1 vs. uniprot
Match: A0A7S4KWM3_GUITH (Hypothetical protein (Fragment) n=3 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KWM3_GUITH)

HSP 1 Score: 103 bits (257), Expect = 3.190e-21
Identity = 80/279 (28.67%), Postives = 119/279 (42.65%), Query Frame = 1
Query:  193 KAASPWGSLVETEIIATHLLKCLPEIARDVSDAARKNELVSGIVLGKGTEARSTVDGLKAVNRQLRQDILPKALEAAPRIASAVPRPGTNTTGSSTTPKRRTGQMEGIAENLYSIKNTARELTPQKLRQGLQTAAAETENIFSRTPSGLYSPSYSLEDAREGFEIRRYASYAVCSAQMDADTARESDQRDDDNTGVTDGSGEGFNTLAGYLFGDNKQEVAMDMTTPVNIDVTSTGRT--MSFVMPKDVPAEEAPTPRNPRVNVRDVAEGEVLAVREFPG 1023
            K A P+ S +E  +I   L +   +++  VSD          ++   G+  R  +   +AV RQ+ +DI+P+A   A  +   V   G     +    +      +  AE +                  +     E  N+FS TP GL +PSYS+  + + +E+R Y+S  + S  M   T ++ D             G  FN LA +LFG N ++ AM MTTPV   V   GRT  MSFV+P     +  P P  P        E   +A REFPG
Sbjct:   15 KLADPFVSPLEKPMILAELARRRDQVSDTVSDVLGGRRSQEALL---GSRGRKQLRAARAVARQVTEDIVPEARRQAEELLEEVRGNGIEKIAADIQSRLLVAIDDATAEGMLKAPGVV----------SVDDIVTELRNVFSETPEGLETPSYSVVSSSDEYEVREYSSMLLASKDMS--TGKQED-------------GNAFNELASFLFGKNDRKEAMSMTTPVITSVDREGRTRSMSFVIPSKYNLDNVPRPLQPSDVTMSRMEAVRVAAREFPG 265          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17782.5391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVR9_ECTSI6.360e-11298.27Heme-binding family protein n=1 Tax=Ectocarpus sil... [more]
A0A6V1RB38_HETAK9.180e-2934.41Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0DGY6_9EUKA1.700e-2734.88Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S3E9Q7_9RHOD3.780e-2636.28Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S2G1D3_9STRA1.110e-2530.98Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A4D9DAF2_9STRA3.190e-2430.61Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3Z1V0_9EUKA1.380e-2334.47Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S0TMQ6_HEMAN2.190e-2230.47Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A6T7QSS0_9CRYP2.020e-2131.13Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S4KWM3_GUITH3.190e-2128.67Hypothetical protein (Fragment) n=3 Tax=Guillardia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17782contigEcto-sp13_S_contig17782:751..3589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score336.7
Seed ortholog evalue1.3e-89
Seed eggNOG ortholog2880.D7FVR9
Model size1029
Hectar predicted targeting categorychloroplast
Exons6
EggNOG free text desc.Heme-binding-like protein At3g10130
EggNOG OGs2CMD4@1,2QQ0B@2759
Ec32 ortholog descriptionSOUL haem-binding protein
Ec32 orthologEc-03_003280.2
Cds size1029
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17782.5391.1prot_Ecto-sp13_S_contig17782.5391.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17782 751..3589 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462921.7170222-CDS-Ecto-sp13_S_contig17782:750..10051681462921.7170222-CDS-Ecto-sp13_S_contig17782:750..1005Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17782 751..1005 +
1681462921.727197-CDS-Ecto-sp13_S_contig17782:1591..17441681462921.727197-CDS-Ecto-sp13_S_contig17782:1591..1744Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17782 1592..1744 +
1681462921.7355216-CDS-Ecto-sp13_S_contig17782:1960..21751681462921.7355216-CDS-Ecto-sp13_S_contig17782:1960..2175Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17782 1961..2175 +
1681462921.7438393-CDS-Ecto-sp13_S_contig17782:2609..27161681462921.7438393-CDS-Ecto-sp13_S_contig17782:2609..2716Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17782 2610..2716 +
1681462921.7519417-CDS-Ecto-sp13_S_contig17782:2995..31641681462921.7519417-CDS-Ecto-sp13_S_contig17782:2995..3164Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17782 2996..3164 +
1681462921.7597117-CDS-Ecto-sp13_S_contig17782:3459..35891681462921.7597117-CDS-Ecto-sp13_S_contig17782:3459..3589Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17782 3460..3589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17782.5391.1

>prot_Ecto-sp13_S_contig17782.5391.1 ID=prot_Ecto-sp13_S_contig17782.5391.1|Name=mRNA_Ecto-sp13_S_contig17782.5391.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=343bp
MTALLPPLILTLLFIDRAAAFVPSASTKHRGRGGGLRLRSSRSSSSSSSG
DKTPSWRLEVDDLVKAASPWGSLVETEIIATHLLKCLPEIARDVSDAARK
NELVSGIVLGKGTEARSTVDGLKAVNRQLRQDILPKALEAAPRIASAVPR
PGTNTTGSSTTPKRRTGQMEGIAENLYSIKNTARELTPQKLRQGLQTAAA
ETENIFSRTPSGLYSPSYSLEDAREGFEIRRYASYAVCSAQMDADTARES
DQRDDDNTGVTDGSGEGFNTLAGYLFGDNKQEVAMDMTTPVNIDVTSTGR
TMSFVMPKDVPAEEAPTPRNPRVNVRDVAEGEVLAVREFPGM*
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mRNA from alignment at Ecto-sp13_S_contig17782:751..3589+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17782.5391.1 ID=mRNA_Ecto-sp13_S_contig17782.5391.1|Name=mRNA_Ecto-sp13_S_contig17782.5391.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2839bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17782:751..3589+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAGCCTTGCTACCCCCCCTGATCTTAACCCTCCTTTTCATCGATCG AGCTGCCGCGTTTGTCCCCAGTGCGTCAACGAAACACCGCGGACGCGGTG GAGGACTAAGGTTGCGCTCATCCCGTAGCAGCAGCAGCAGCAGCAGCGGC GACAAGACGCCCTCTTGGCGTCTAGAAGTAGACGACCTTGTGAAAGCAGC GTCACCATGGGGTAGTCTCGTGGAGACTGAAATCATCGCGACACATCTAC TGAAGGTAGGTGTTTTTATTATTTTTGTTTGCGCCAGTGGTGGAAATGGT CTTCTTTGTGTCCTCTGCGACGCTTTCGCATCGTCGACCGTGCACAGGCG CCCAGGCAGTGTACTACCGAGTACTCAGCAACCATTTTTGGAGCGGTCGC CCATTCGAGTACCAGAAAGTAGAGGATGTTTACACGCCTTGCCAACGTAA CCGGCGTCCGGTTAGCGTCGCAGATGCTGATATAAAGGAGCCCCCAGCCC CCCGCCAAAGATTTTATCGAGTGAGATCGGATCGAAGTGACGAAAGATGA GTGAAAGTGACTCGGGGAAAAAAAAATGTGGTCTCTGAGCGTAGTCAAGA GGCGACTTTATTTATTTACAACGATCTTACGCACACAAACAAATGCTTAC GGCAGAACACGTTGACACCACCCAGTGGGAGAGGTATATCAACAGTAGGA ACAGTACTCCATCTCGTTGGGTGTGATGCGTGTGATCATTGATCAAACGA CATGGGGCAAACATCCAACGGGGAACCCCGGGGAACCCCTTCCCTGCGCT ATGCCGCCCTTTCCCTTCCACACTTGCGTGGCGTGCATCAGTGCCTGCCG GAGATCGCGCGAGACGTTTCTGATGCAGCCCGAAAAAACGAACTTGTTTC TGGAATTGTGCTGGGCAAGGGTACTGAGGCGCGATCGACTGTCGATGGCC TGAAAGCGGTAAACAGGCAACTTCGCCAGGATATCCTTCCAAAGGTGTGT GCGTTTCTTGTTAATTAGTGTACCTCATGCGTCATCCTTTTGCCGTAGAT ACAAATTCCACGAAAGAAGTAGTAGTGCGAATCAAACCGAGCTCGCGGTG GCTTTGACGAAGGGATAGTCCTGTACTTCGAAAAGTAGTTGATATTCACC CGCTGATCACACTCGCCTGACCCCGGTACCACTCCCTGTTATTTTTTGGC ATGATGACAGGCTTTGGAGGCCGCCCCTCGCATCGCGAGTGCTGTGCCCC GGCCGGGTACTAACACGACAGGCTCATCGACTACCCCCAAGCGGCGAACT GGGCAGATGGAAGGAATCGCAGAGAACCTATACTCGATCAAAAACACAGC CCGTGAGCTCACACCACAGAAGTTGCGCCAGGGGCTGCAAACTGCGGCGG CAGAAACTGAGAACATTTTCAGCAGGTGCGAACTTCTTCTTGGTGGCTTT CAAACGTACCTATGCTGTGTGCGCGAGGGTTCATGTGTCCGTTGAACGAC ACTTTCGTGCACGATGAGTGCTTTCCCGAAGCTGTCGATGCGGAGGGTCC ACCGAAAGAGGTTCTTCGCACTGGCGCTACTTCTTTTTATTGCTTGTCCA TTACATTACATAGTAGCGCAACATGATATCCTTGATTTGTCTTGCCTGCT TGGGGTTTCGTTTCTGCACCGAACTCTCTTTATTTGTGTGGAACGGCTAG CCGCAGTGAATATACACCTCGGACGCAATAGTGAGGGATATTTTATTTGC GCCTTGTACGTGGTTTACCTCCACTAGTAGCCCCTGTCTGCGTCTTTCGA ATGAGACAGACACACGAGTGTTTTGATATGACTTCGCATGGTTTTGTGGT TCGATGCAGGACGCCATCCGGGCTGTACAGCCCCAGTTACTCGCTTGAAG ACGCGAGGGAAGGCTTCGAGATCCGACGCTACGCATCTTACGCTGTGTGC TCTGCGCAAATGGACGGTGAGTCTTGGGGGGTATTTTCCAAAGTTTCCCA GAACATGCACGGAGCGTGGCCGACCGAAAGGCTTCGCCGGGAACTTTTTG TCCGTGCTTTTCGACACAAGTATTCGTCTTCTTGTCAGCTGCACGGATGC GAACGACTCTCCCTAGGCATGTCAGCGGCTTGATCTCTTCGAACTGGCGT TGGTTCTACTTTTTGACGGTTCCAGGCAGTGTTGCTGAGCAAGACCCTCG TTGGCACCGCTTCCGTGTGTGCCGCTGCTTCGTGAACATTAACAGCTGAC ACGGCTCGAGAGTCTGACCAGCGGGACGATGACAACACCGGCGTTACTGA CGGGTCTGGCGAAGGTTTCAACACCCTGGCTGGTTATCTGTTCGGAGACA ATAAACAGGAGGTGGCCATGGACATGACCACACCCGTCAACATCGACGTT ACAAGTACCGGCAGGTGTGTGGCGTAGCTAAACCTTATAGGGCCTTTTTC CAGCGTGTATGGGTACATTAGCTGTGCTCCTTTTTCATGGACCAGCAATG GTCAACTGCACATTGGGTACCCCACTGCCGATTTTTGCCAAGATGATTCG TTGTTTGTTCATGTCACTTCAAATATAGGTTGCGCTGGACTTTTTTCGGC GCCTGTATGCACCACACCGCACCACATGCGCAGTCTCCGAACGAGTGCAC GGTTGAATCCAAGGAGCATGATGCCCCGTGCCTAACAATTATCCTCCCGC GTGGTGCAGAACCATGTCGTTCGTGATGCCGAAAGACGTCCCGGCGGAAG AGGCTCCTACTCCACGGAACCCCCGCGTAAACGTGAGGGATGTGGCTGAG GGCGAGGTTCTTGCTGTGCGCGAGTTTCCAGGTATGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17782:751..3589+

>mRNA_Ecto-sp13_S_contig17782.5391.1 ID=mRNA_Ecto-sp13_S_contig17782.5391.1|Name=mRNA_Ecto-sp13_S_contig17782.5391.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1029bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17782:751..3589+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAGCCTTGCTACCCCCCCTGATCTTAACCCTCCTTTTCATCGATCG
AGCTGCCGCGTTTGTCCCCAGTGCGTCAACGAAACACCGCGGACGCGGTG
GAGGACTAAGGTTGCGCTCATCCCGTAGCAGCAGCAGCAGCAGCAGCGGC
GACAAGACGCCCTCTTGGCGTCTAGAAGTAGACGACCTTGTGAAAGCAGC
GTCACCATGGGGTAGTCTCGTGGAGACTGAAATCATCGCGACACATCTAC
TGAAGTGCCTGCCGGAGATCGCGCGAGACGTTTCTGATGCAGCCCGAAAA
AACGAACTTGTTTCTGGAATTGTGCTGGGCAAGGGTACTGAGGCGCGATC
GACTGTCGATGGCCTGAAAGCGGTAAACAGGCAACTTCGCCAGGATATCC
TTCCAAAGGCTTTGGAGGCCGCCCCTCGCATCGCGAGTGCTGTGCCCCGG
CCGGGTACTAACACGACAGGCTCATCGACTACCCCCAAGCGGCGAACTGG
GCAGATGGAAGGAATCGCAGAGAACCTATACTCGATCAAAAACACAGCCC
GTGAGCTCACACCACAGAAGTTGCGCCAGGGGCTGCAAACTGCGGCGGCA
GAAACTGAGAACATTTTCAGCAGGACGCCATCCGGGCTGTACAGCCCCAG
TTACTCGCTTGAAGACGCGAGGGAAGGCTTCGAGATCCGACGCTACGCAT
CTTACGCTGTGTGCTCTGCGCAAATGGACGCTGACACGGCTCGAGAGTCT
GACCAGCGGGACGATGACAACACCGGCGTTACTGACGGGTCTGGCGAAGG
TTTCAACACCCTGGCTGGTTATCTGTTCGGAGACAATAAACAGGAGGTGG
CCATGGACATGACCACACCCGTCAACATCGACGTTACAAGTACCGGCAGA
ACCATGTCGTTCGTGATGCCGAAAGACGTCCCGGCGGAAGAGGCTCCTAC
TCCACGGAACCCCCGCGTAAACGTGAGGGATGTGGCTGAGGGCGAGGTTC
TTGCTGTGCGCGAGTTTCCAGGTATGTGA
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