mRNA_Ecto-sp13_S_contig1777.5384.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1777.5384.1
Unique NamemRNA_Ecto-sp13_S_contig1777.5384.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1777.5384.1 vs. uniprot
Match: D7FLJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ4_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 2.360e-25
Identity = 57/63 (90.48%), Postives = 58/63 (92.06%), Query Frame = 1
Query:  496 IQSGASTWDEKRGKCVRLARYQRVLHVVWAALGVSIQHIVSWPGGVRRLTFLEDFNQDLRWVL 684
            +Q GASTWDEK G CVRLARYQRVLHVVWAALGVSIQ IVSWPGGVRRLTFLE FNQDLRWVL
Sbjct:    1 MQGGASTWDEKGGICVRLARYQRVLHVVWAALGVSIQRIVSWPGGVRRLTFLEGFNQDLRWVL 63          
BLAST of mRNA_Ecto-sp13_S_contig1777.5384.1 vs. uniprot
Match: A0A6H5JK24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK24_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 3.000e-24
Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = 1
Query:  496 IQSGASTWDEKRGKCVRLARYQRVLHVVWAALGVSIQHIVSWPGGVRRLTFLEDFNQDLRWVL 684
            +Q GASTWDE+ G CVRLARYQRVLHVVWAALGVSIQ IVSWPGG  RLTFLEDF+QDLRWVL
Sbjct:    1 MQGGASTWDEEGGICVRLARYQRVLHVVWAALGVSIQRIVSWPGGEGRLTFLEDFDQDLRWVL 63          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1777.5384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLJ4_ECTSI2.360e-2590.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JK24_9PHAE3.000e-2485.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1777contigEcto-sp13_S_contig1777:9322..14683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3362
Hectar predicted targeting categoryother localisation
Exons5
Cds size1701
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1777.5384.1prot_Ecto-sp13_S_contig1777.5384.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1777 9424..13124 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462921.080469-UTR-Ecto-sp13_S_contig1777:9321..94231681462921.080469-UTR-Ecto-sp13_S_contig1777:9321..9423Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1777 9322..9423 +
1681462921.1432128-UTR-Ecto-sp13_S_contig1777:13124..146831681462921.1432128-UTR-Ecto-sp13_S_contig1777:13124..14683Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1777 13125..14683 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462921.0913806-CDS-Ecto-sp13_S_contig1777:9423..104881681462921.0913806-CDS-Ecto-sp13_S_contig1777:9423..10488Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1777 9424..10488 +
1681462921.1017613-CDS-Ecto-sp13_S_contig1777:11202..113781681462921.1017613-CDS-Ecto-sp13_S_contig1777:11202..11378Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1777 11203..11378 +
1681462921.1110024-CDS-Ecto-sp13_S_contig1777:12025..121251681462921.1110024-CDS-Ecto-sp13_S_contig1777:12025..12125Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1777 12026..12125 +
1681462921.1210287-CDS-Ecto-sp13_S_contig1777:12389..125751681462921.1210287-CDS-Ecto-sp13_S_contig1777:12389..12575Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1777 12390..12575 +
1681462921.1307566-CDS-Ecto-sp13_S_contig1777:12950..131241681462921.1307566-CDS-Ecto-sp13_S_contig1777:12950..13124Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1777 12951..13124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1777.5384.1

>prot_Ecto-sp13_S_contig1777.5384.1 ID=prot_Ecto-sp13_S_contig1777.5384.1|Name=mRNA_Ecto-sp13_S_contig1777.5384.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=567bp
MALHSTWCHNPVKSPTKEILAMKPSSPNPPSPTITSLAALQLAFASGYEG
HHQPQLVCLDTCNACRESVAIRLRLTDRMPPSLSALFFATPHVTIAGQQN
NKYIDENGNATATTTRGGILFVTPTSSPQLSIQSGASTWDEKRGKCVRLA
RYQRVLHVVWAALGVSIQHIVSWPGGVRRLTFLEDFNQDLRWVLWPEGLR
ELTFREGFNQPMEDVVFPKGLERLSLGADFNQDIQNASFPPALTFLSLGA
SFNHPLEGAELPKSLQRLVWGQLFDQPVERVRWPPALQSIAFGDAFNHPV
EQAEFPARVQSLQLGKAFDQQVERVAWPERLESLSFAHDFNHPVAEMSWP
EGVKEVSFGYNFDKPLSGVKWPSYLESVIFGFRYNKSLDNVTWPALCRSI
QLGESFNLPLHGISWPQGLLELDLGDDFNHPLEGVTLPAGLERLYLSVFF
NQPVVAVEWPEGLLELDFGLNFNMPIEGTSFPWGLQSVCFGRCFNQDVTR
VSWPGELTRIAFGRAFVGALEGDSWPPPKLEVLDLGSKFHAKHRIDESNL
RQGCQVFYLYVPGSDY*
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mRNA from alignment at Ecto-sp13_S_contig1777:9322..14683+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1777.5384.1 ID=mRNA_Ecto-sp13_S_contig1777.5384.1|Name=mRNA_Ecto-sp13_S_contig1777.5384.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5362bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1777:9322..14683+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGCAAGATCGAGAGAGAGAGCGGTTGACGAACGTTAAACGTTCGTGCAC GATCTCCTTCGTATGCGCTCCTTCGCTGAACGTTGTTGATGGTCTACTGT ACATGGCTCTTCACTCCACCTGGTGTCACAATCCGGTCAAGTCTCCGACG AAGGAGATTTTAGCGATGAAGCCATCATCTCCAAATCCACCATCGCCCAC AATAACGTCACTAGCGGCGCTTCAGCTAGCGTTCGCTTCTGGATACGAGG GCCATCACCAGCCGCAGTTGGTATGTCTCGACACCTGCAATGCCTGTCGT GAATCGGTGGCCATCCGTTTACGTCTCACAGACCGCATGCCGCCGTCCCT CAGCGCCTTGTTCTTCGCCACTCCACACGTGACGATTGCAGGGCAGCAAA ATAACAAGTACATCGACGAAAATGGTAACGCCACCGCCACCACCACCAGG GGCGGAATTTTGTTTGTCACGCCCACCTCTTCGCCACAACTATCGATACA GAGTGGCGCGAGCACCTGGGATGAGAAACGGGGGAAATGTGTTCGGCTTG CGAGATACCAAAGGGTATTGCATGTTGTGTGGGCGGCTCTGGGCGTATCG ATTCAACACATTGTGTCATGGCCGGGTGGCGTACGCCGGCTCACGTTCTT GGAGGACTTCAACCAAGATCTACGGTGGGTGCTATGGCCAGAGGGACTGC GGGAGCTGACCTTTCGAGAGGGTTTCAACCAGCCCATGGAAGATGTAGTC TTTCCAAAGGGCCTGGAGCGACTTTCCCTTGGTGCGGATTTCAACCAGGA TATTCAAAATGCATCGTTCCCTCCTGCACTAACGTTCTTGTCCCTGGGGG CGTCTTTCAACCATCCTCTCGAGGGAGCTGAGCTGCCGAAGTCCCTACAA AGGCTTGTGTGGGGACAGCTGTTCGACCAGCCGGTTGAAAGGGTTCGCTG GCCGCCGGCGTTACAGAGCATCGCCTTCGGTGACGCGTTCAATCACCCCG TCGAGCAGGCTGAGTTTCCGGCACGAGTGCAGTCCCTTCAGCTTGGAAAA GCATTCGATCAGCAAGTTGAACGAGTGGCATGGCCTGAACGCCTAGAGAG TCTCTCATTCGCACATGACTTCAACCACCCTGTGGCGGAGATGTCATGGC CGGAGGGCGTGAAAGAGGTGCGCGTACTCTGGGAGTAGCGCGCGTTTTTA GTTGGCAACTAGTCGATATCTCACACGAGTGCATTTGATACCGCAGAACA CCAACCAGTATTTGCTGTGGTTCTTTTGGCGTGAAGGACGGTGGACCTTT CTTTCATTGTGTTGGGAGTTGTAGTAGCTGCCGAAACAACGCAAAACGAC CACTACGCAGTATCGCCGCACCTTTGGGAGCTTCGTGGATAGTTCGGTGG GCTGCCCATGGAAAAAAAGCAAACCCTCATCAGTGTAGTCGACTGAAACA AAGGTATTGTATCCATGCTGTCGTCATGAAGGCACGAAGACGTTCGTTCC CCTGCACGGTTGCATGAACGTATTTCACGCTTACTTGAGGTCAAATCGAA CATTGATCCCAAGTCGGTGTGCGGAAACTCAATCGTTCAGTTGATGAAAC GGGCGTGCATCGACCAGAAACTACAATTTGCCCACCGCTGCTAGCCAACA AGCAGCTGAGCGTGCAACACAGTTGGCGTGGATGCAGCGGCCCAGACAAA TGATACCGGTATCCACGTAGCCACGAGTCCCGGCAGCAGCGGAGGCCATC ACAAACCAGCAACCACTTTTCATTATCACTCAACCGTAACCCACGACAAA GAACACGCCGCCAAACATGAGGTCCTCAGGAACGATTCACGAAGCCGTTG TATGGTGGCGACCACTATCGACAATGCTCAGGTCTCCTTTGGGTACAACT TTGACAAACCGCTGTCGGGAGTGAAGTGGCCGTCTTACCTTGAGAGCGTC ATTTTCGGCTTCCGCTATAACAAGTCCCTCGACAACGTCACGTGGCCCGC GCTCTGCCGCTCCATTCAGCTCGGCGAGTCCTTCAACCTTCCTCTGCACG GCATAAGGTATGACGGCGGTCAAGCGGCTGTTACGTCAAGAAATGACAAC GCAACTCTAACCCTAACCAGATGGTGTAAGCCAAGGGTATTGAAAATTAT GGGGGCGGCTTAAATCACAACAGCTTGGAAGCGACCATCTTTGACGGCTC CCTTCGACAAACCGGTTATTGCATTATTCGAGATATCAGCGAGCCCTCAC AGTCGCCAGTACTTCGGCCAAAACACGCCACGGTGCCGCGGTTCAAACAG CCAAGGGTCACATCTGGCCGTCAGACTCCCCCCGTTCTGCTTGCCTCTGA CGGTGAAAGATGCGGAACGTGGTTGCTTCCAGATTGTCCCAACAACGAGA GCCGTCGAGCTTACGGGGTCTCGACCACACGAATACAAAAGGAAGATCGT CGTGGTCGAGACACAAGGCCCACCGTGTAGACGCCAAGGAGACGGCACAG GCGCTCCCAATGCAAAACATGGCCGGTGTTTCTATCGAGATGCAGGTAGC TAGATGCAGGAGAGGTTCTTCGTCGTGAGGGCGTTACATGGGCATCACTC AAACTGTGAAGGTAGGAACGGAAACAAACAAAACATAAAAACATACCCAG ACGGCTACAACTGTACCCCGTGTTTATCCTATTCTGGTCTTATTCCGAAA GCAGTTGGCCGCAAGGGCTGCTCGAGTTGGACCTGGGGGACGACTTCAAC CACCCCTTGGAAGGCGTTACTCTACCAGCGGGGCTGGAACGGCTCTACCT CTCGGTACGCCTGCTTTCAGTGTAAACCACGTGTTTGTTGGCGACCGTGG TCTAAGGGCGGGTCATTGCTGTTGTTGCTGTTGACACTGCTGCAGCTGTT GCTTGAATTTTTCCGTTCTCGCGCACGTCATCTATACCTCGTCGGCGTCG TGTGCCTACATACGTGTGGCGGTTAGGGTATGAATGGGAAAGCTCCGAGG TCGCGTTTCTATCGCGAAAACACCGAAATTTTCCACGCTCTTGACAGTTA TTTCCTTCTTCGATGAAGGTGTTCTTCAACCAGCCTGTGGTCGCGGTTGA GTGGCCCGAAGGACTGCTCGAGCTGGATTTCGGGCTGAATTTCAACATGC CGATCGAGGGCACGTCGTTTCCCTGGGGATTGCAGTCGGTGTGCTTCGGC CGGTGCTTCAATCAGGATGTCACCCGCGTTTCGTGGCCGGGGGAATTGAC AAGGGTAAAATGTGTTGTTGTTGTTGAGGTTGATGGATGTTGCTGTTGAT GTTGTAGTTCTTGTTGTTCTTGTTGATTCTATTGCTGATCTCGATCGCAA AGCCACCCTGACCAGCCACACACCTGTATGTGGTCTTTCCTCCGTGACCC CGGTTTACATATCCACCAACCCTTTCAGCGCAGGCACGGAGTAGACTCCC TTCCTACCTTCATTACCTCAAAACGCGTGAAAGTCTCTCCACGCATGGTC TTTCCCCTATAGGTCGTCCAAATGATCTTGGGGACAGACATGTGCCTTAA ATAGAAGAACAACCTACGAGCGTGCTGCCTGCACAATGTACCTCCCCTCC CAATATCGAAAAATGCCACATCGGTGTAGATCGCCTTCGGACGAGCGTTC GTCGGGGCCCTCGAGGGAGACTCCTGGCCACCCCCGAAGCTGGAAGTGTT GGACCTGGGAAGCAAGTTCCACGCGAAGCATCGAATTGACGAGTCCAACC TTCGGCAAGGGTGTCAGGTGTTCTACCTCTACGTTCCAGGCAGCGACTAC TAGGTCGCTGTCTTTGTTGTTGTGGCTCCTCTTTTTGGTTGTGGTGGTTG CTTTGTTGCTGGATATTGTTGTCCTCGGGCAGCGCGGACTTTCGCTTGTA GGCAAACCAAGCACGTATCGCCGTAGCACATGGTAACCTTGTTTGAGCAG AAGCACCACACATAGCATCAACCTCCTGAAACGAATTCCGAGGCCTCAAC TTGTGCTGAAAGGGGGTACGGAGCACCAGGAGGTTTTCTTCAAGTGTGAA ACGGCGACCTGCGGACAGGGAATGTCTACTCGAGGCCATCGATCTCTTAC AGGCGGTTTGCACGGACGACTCGACGGACAAGGAAAAGTTCCTCGAGGTA CAGTAGTTGGCGTACTCACAGCTGAAGCCGAAAGAGGCAGCAATGCAAGG GAAAATTACAAAGTGCACTCTCTGGCACAGAGAGCTGAGATACGGGAGTT ACACGAAGAAACGGGCAGAGCTAGTCGATGTTACCAGGAGCACTTGGCAA CGATTGTAAGGACGCCGAAGCCACTTTTGAGTACTGGGCCGAGAGACACG ACGCTTCAAAGTGCCCTGTGCTCTTTGTTTCACGAAAAAACTCGTTGACA CAAAGTACCCCGAACACTTCTGGGTGGCATGTAGGGAATGGACCGCCCTT TCAGATAAAAAAATTATGGGAACTGATATAGCCTACGCATCTGCGAATGT ATGGCTTCTTTATGTTGTCGTGGGGGGCGGGGGTCGGACGGAACGCCAAC TGCAGGAGGAGAACCGCCGACTGTAGGGTTATTCCAAGCTTTTCGGCTTG TAGGTGTTGCAGCCGCAACGGGGCTCGGTATTTTACCTCGACCTGCTTCA GGGGGTCAGTAGAATTCCTCTACCTGCTTCAGACGTTTCGTTGAATAGGA TTGGCGCGGCCCTTGTGGTGGTAGGTACCGGCGGATTACCCAAGGGCTAA GATATGAGCACCACTAAATGTGGATCTGTTGCGCGTGCCGAAGATTGGGA ATGTCGGCGAGTGGGGCGGTCTTCCGACGGACGTGGTCTCTTGTACCGAT TCGAGTGGTTACATGGTGGGGTGCGTGAGTGCCGAGTACGACATGATACT GTTGGAGTTGGTAGGGGGCGATTGGTCCGCTGCTTCGGCAGAAGCATTCT AAGAACAAGGGAGTGGACAGTCGGGGTATTTTGGGGTGTTTTCTGGGGCC CACAGTACAAATGCCTTAAATTCCTGACTGCAGTCACCACGGCGATAAAG ATCCCGCAAATGGCATAAATGAAATGACCCGAGTGTAACGCAGGACCATA GTCACCTCGAGCAACGACCAGTGAATTGGTGTGGTGTGCAGTCCACAGGC TCGCTCCAAATCCACGATTGTTATTTCAGCCTCTCAAAAGTTGCCCCATG TACCCCCTGTTTAGTCGAGGTATTTCGCGAAAGTATGCATACATGGAGAT CTTTCGCAACTACTTCGTATGTAGTGAGAAACGAATTCTGATATAGAACC AGTGTCGTTGAATCTTCTCAGAACACGTACGTGTGTCTTGATTGGCAATA GGAATATATCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1777:9322..14683+

>mRNA_Ecto-sp13_S_contig1777.5384.1 ID=mRNA_Ecto-sp13_S_contig1777.5384.1|Name=mRNA_Ecto-sp13_S_contig1777.5384.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1701bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1777:9322..14683+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCTTCACTCCACCTGGTGTCACAATCCGGTCAAGTCTCCGACGAA
GGAGATTTTAGCGATGAAGCCATCATCTCCAAATCCACCATCGCCCACAA
TAACGTCACTAGCGGCGCTTCAGCTAGCGTTCGCTTCTGGATACGAGGGC
CATCACCAGCCGCAGTTGGTATGTCTCGACACCTGCAATGCCTGTCGTGA
ATCGGTGGCCATCCGTTTACGTCTCACAGACCGCATGCCGCCGTCCCTCA
GCGCCTTGTTCTTCGCCACTCCACACGTGACGATTGCAGGGCAGCAAAAT
AACAAGTACATCGACGAAAATGGTAACGCCACCGCCACCACCACCAGGGG
CGGAATTTTGTTTGTCACGCCCACCTCTTCGCCACAACTATCGATACAGA
GTGGCGCGAGCACCTGGGATGAGAAACGGGGGAAATGTGTTCGGCTTGCG
AGATACCAAAGGGTATTGCATGTTGTGTGGGCGGCTCTGGGCGTATCGAT
TCAACACATTGTGTCATGGCCGGGTGGCGTACGCCGGCTCACGTTCTTGG
AGGACTTCAACCAAGATCTACGGTGGGTGCTATGGCCAGAGGGACTGCGG
GAGCTGACCTTTCGAGAGGGTTTCAACCAGCCCATGGAAGATGTAGTCTT
TCCAAAGGGCCTGGAGCGACTTTCCCTTGGTGCGGATTTCAACCAGGATA
TTCAAAATGCATCGTTCCCTCCTGCACTAACGTTCTTGTCCCTGGGGGCG
TCTTTCAACCATCCTCTCGAGGGAGCTGAGCTGCCGAAGTCCCTACAAAG
GCTTGTGTGGGGACAGCTGTTCGACCAGCCGGTTGAAAGGGTTCGCTGGC
CGCCGGCGTTACAGAGCATCGCCTTCGGTGACGCGTTCAATCACCCCGTC
GAGCAGGCTGAGTTTCCGGCACGAGTGCAGTCCCTTCAGCTTGGAAAAGC
ATTCGATCAGCAAGTTGAACGAGTGGCATGGCCTGAACGCCTAGAGAGTC
TCTCATTCGCACATGACTTCAACCACCCTGTGGCGGAGATGTCATGGCCG
GAGGGCGTGAAAGAGGTCTCCTTTGGGTACAACTTTGACAAACCGCTGTC
GGGAGTGAAGTGGCCGTCTTACCTTGAGAGCGTCATTTTCGGCTTCCGCT
ATAACAAGTCCCTCGACAACGTCACGTGGCCCGCGCTCTGCCGCTCCATT
CAGCTCGGCGAGTCCTTCAACCTTCCTCTGCACGGCATAAGTTGGCCGCA
AGGGCTGCTCGAGTTGGACCTGGGGGACGACTTCAACCACCCCTTGGAAG
GCGTTACTCTACCAGCGGGGCTGGAACGGCTCTACCTCTCGGTGTTCTTC
AACCAGCCTGTGGTCGCGGTTGAGTGGCCCGAAGGACTGCTCGAGCTGGA
TTTCGGGCTGAATTTCAACATGCCGATCGAGGGCACGTCGTTTCCCTGGG
GATTGCAGTCGGTGTGCTTCGGCCGGTGCTTCAATCAGGATGTCACCCGC
GTTTCGTGGCCGGGGGAATTGACAAGGATCGCCTTCGGACGAGCGTTCGT
CGGGGCCCTCGAGGGAGACTCCTGGCCACCCCCGAAGCTGGAAGTGTTGG
ACCTGGGAAGCAAGTTCCACGCGAAGCATCGAATTGACGAGTCCAACCTT
CGGCAAGGGTGTCAGGTGTTCTACCTCTACGTTCCAGGCAGCGACTACTA
G
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