mRNA_Ecto-sp13_S_contig17758.5379.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17758.5379.1
Unique NamemRNA_Ecto-sp13_S_contig17758.5379.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17758.5379.1 vs. uniprot
Match: A0A6H5JHC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC6_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 2.700e-61
Identity = 172/250 (68.80%), Postives = 178/250 (71.20%), Query Frame = 1 
Query:    1 DAPPYARDGGGXXXDSGSAGSRSGKVADAPLRSRSALPLASPRNKYGSGRFSRRSSEPSAAAPVKGTAVVRAXXXXXXXXXXXXXXXDGHGWFGEDRAAGDGGEAATEQVGVDLESTVLADQDRDEEMETGLNDTVMADDDD--ASNTDTDSETAARAVMAETSAGRPAGRSGRCGAAVSGSGGQCAAVAGGNVESGGDQQGPRPSSSTAPPPEEGNAGAGXXXXXDASPASPGSPEKFSSWKVGGRGLL 744
            DAP +AR    XXX S SAGSRSGKV DAPLRSRSALPLASPRNKYG G FSRRSSEPSAAAP KGTA VR  XXXXXXXXXXXXXX  HGWFGED A   GG+AAT++VGVDLESTVLADQD DEEMETGLNDTV+       ASNTD DSETAARA+MAET AGRPAGRSGRCGAAVS                                         XXXXXDASPASPGS EKFSSWKVGGRGLL
Sbjct:  184 DAPSFARGXXXXXXXSRSAGSRSGKVGDAPLRSRSALPLASPRNKYGRGHFSRRSSEPSAAAPFKGTAAVRVGXXXXXXXXXXXXXXXXHGWFGEDGADSGGGDAATKEVGVDLESTVLADQDGDEEMETGLNDTVVXXXXXXXASNTDADSETAARAMMAETRAGRPAGRSGRCGAAVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDASPASPGSSEKFSSWKVGGRGLL 433
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BLAST of mRNA_Ecto-sp13_S_contig17758.5379.1 vs. uniprot
Match: D7G1G0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G0_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 1.090e-59
Identity = 178/253 (70.36%), Postives = 181/253 (71.54%), Query Frame = 1 
Query:    1 DAPPYARDGGGXXXDSGSAGSRSGKVADAPLRSRSALPLASPRNKYGSGRFSRRSSEPSAAA-PVKGTAVVRAXXXXXXXXXXXXXXXDGHGWFGEDRAAGDGG----EAATEQVGVDLESTVLADQDRDEEMETGLNDTVMADDDDASNTDTDSETAARAVMAETSAGRPAGRSGRCGAAVSGSGGQCAAVAGGNVESGGDQQGPRPSSSTAPPPEEGNAGAGXXXXXDASPASPGSPEKFSSWKVGGRGLL 744
            DAP Y RDGGGXXX   SAGSRSGK+ DAPLRSRSALPLASPRN YGSGRFSRRSSEPSAAA PVKGTA    XXXXXXXXXXXXXXX                    EA TE+VGVDLESTVLADQ  D             DDD ASNTDTDSETAARAVMAETSAGRPAGRSGRCGAAVSG GGQC   AG + ES  DQQGPRPSS              XXXXXDASPASPGS EKFSSWKVGGRGLL
Sbjct:  207 DAPSYVRDGGGXXXXXXSAGSRSGKIGDAPLRSRSALPLASPRNTYGSGRFSRRSSEPSAAAAPVKGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAPTEEVGVDLESTVLADQGPDXXXXXXXXXXXXXDDD-ASNTDTDSETAARAVMAETSAGRPAGRSGRCGAAVSGGGGQC--PAGDHDESRCDQQGPRPSSXXXXXXXXXXXXXXXXXXXDASPASPGSSEKFSSWKVGGRGLL 456
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17758.5379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHC6_9PHAE2.700e-6168.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1G0_ECTSI1.090e-5970.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17758contigEcto-sp13_S_contig17758:2850..3595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size747
Hectar predicted targeting categoryother localisation
Exons1
Cds size744
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462920.5543036-CDS-Ecto-sp13_S_contig17758:2849..35931681462920.5543036-CDS-Ecto-sp13_S_contig17758:2849..3593Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17758 2850..3593 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17758.5379.1prot_Ecto-sp13_S_contig17758.5379.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17758 2850..3593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17758.5379.1

>prot_Ecto-sp13_S_contig17758.5379.1 ID=prot_Ecto-sp13_S_contig17758.5379.1|Name=mRNA_Ecto-sp13_S_contig17758.5379.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=248bp
DAPPYARDGGGGGGDSGSAGSRSGKVADAPLRSRSALPLASPRNKYGSGR
FSRRSSEPSAAAPVKGTAVVRAGGGGGGEEEVVGEDDDGHGWFGEDRAAG
DGGEAATEQVGVDLESTVLADQDRDEEMETGLNDTVMADDDDASNTDTDS
ETAARAVMAETSAGRPAGRSGRCGAAVSGSGGQCAAVAGGNVESGGDQQG
PRPSSSTAPPPEEGNAGAGGAAGGDASPASPGSPEKFSSWKVGGRGLL
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mRNA from alignment at Ecto-sp13_S_contig17758:2850..3595+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17758.5379.1 ID=mRNA_Ecto-sp13_S_contig17758.5379.1|Name=mRNA_Ecto-sp13_S_contig17758.5379.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=746bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17758:2850..3595+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATGCCCCGCCTTACGCCCGGGACGGTGGCGGCGGCGGCGGCGACAGCGG
CAGCGCGGGGAGTCGTAGCGGTAAGGTTGCAGACGCCCCCCTGAGATCTC
GGTCTGCGTTGCCGCTGGCCTCTCCGAGAAATAAATACGGGAGCGGCCGC
TTCTCCCGCCGGTCTTCCGAACCCTCGGCGGCGGCGCCGGTCAAGGGGAC
GGCGGTCGTCCGCGCCGGTGGCGGTGGCGGTGGCGAAGAGGAGGTGGTCG
GAGAAGATGACGATGGTCATGGTTGGTTCGGGGAGGACAGGGCCGCCGGT
GATGGCGGCGAAGCGGCCACAGAGCAGGTAGGCGTAGACCTGGAGTCGAC
AGTTTTGGCGGACCAAGACCGCGACGAGGAGATGGAGACGGGCCTCAACG
ACACGGTCATGGCAGACGACGACGATGCCAGCAACACGGATACCGACAGC
GAGACCGCTGCCCGTGCCGTGATGGCGGAGACGAGCGCGGGTCGTCCGGC
CGGGAGATCCGGGCGGTGTGGTGCCGCCGTCAGCGGTAGCGGTGGACAAT
GCGCCGCTGTTGCGGGCGGTAATGTCGAAAGCGGTGGTGATCAACAAGGG
CCCCGGCCATCGTCCTCCACAGCACCACCACCGGAGGAAGGGAACGCAGG
AGCAGGCGGTGCTGCAGGAGGGGACGCCTCGCCGGCATCCCCGGGGTCAC
CGGAGAAGTTCTCTTCCTGGAAGGTGGGCGGGAGAGGGCTGCTCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17758:2850..3595+

>mRNA_Ecto-sp13_S_contig17758.5379.1 ID=mRNA_Ecto-sp13_S_contig17758.5379.1|Name=mRNA_Ecto-sp13_S_contig17758.5379.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=744bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17758:2850..3595+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATGCCCCGCCTTACGCCCGGGACGGTGGCGGCGGCGGCGGCGACAGCGG
CAGCGCGGGGAGTCGTAGCGGTAAGGTTGCAGACGCCCCCCTGAGATCTC
GGTCTGCGTTGCCGCTGGCCTCTCCGAGAAATAAATACGGGAGCGGCCGC
TTCTCCCGCCGGTCTTCCGAACCCTCGGCGGCGGCGCCGGTCAAGGGGAC
GGCGGTCGTCCGCGCCGGTGGCGGTGGCGGTGGCGAAGAGGAGGTGGTCG
GAGAAGATGACGATGGTCATGGTTGGTTCGGGGAGGACAGGGCCGCCGGT
GATGGCGGCGAAGCGGCCACAGAGCAGGTAGGCGTAGACCTGGAGTCGAC
AGTTTTGGCGGACCAAGACCGCGACGAGGAGATGGAGACGGGCCTCAACG
ACACGGTCATGGCAGACGACGACGATGCCAGCAACACGGATACCGACAGC
GAGACCGCTGCCCGTGCCGTGATGGCGGAGACGAGCGCGGGTCGTCCGGC
CGGGAGATCCGGGCGGTGTGGTGCCGCCGTCAGCGGTAGCGGTGGACAAT
GCGCCGCTGTTGCGGGCGGTAATGTCGAAAGCGGTGGTGATCAACAAGGG
CCCCGGCCATCGTCCTCCACAGCACCACCACCGGAGGAAGGGAACGCAGG
AGCAGGCGGTGCTGCAGGAGGGGACGCCTCGCCGGCATCCCCGGGGTCAC
CGGAGAAGTTCTCTTCCTGGAAGGTGGGCGGGAGAGGGCTGCTC
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