mRNA_Ecto-sp13_S_contig17728.5368.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17728.5368.1
Unique NamemRNA_Ecto-sp13_S_contig17728.5368.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17728.5368.1 vs. uniprot
Match: Q8QNQ7_ESV1K (EsV-1-2 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNQ7_ESV1K)

HSP 1 Score: 412 bits (1060), Expect = 7.590e-144
Identity = 219/244 (89.75%), Postives = 226/244 (92.62%), Query Frame = 1 
Query:    4 QIDKDTSFNNMVEYFENGMPVSEHVLCRASALGRLDLFELAVEHGCVVSHKAVEVAARCGHLRIVEYIWYVGSLCTQCACTGASKGGQLDVLKCLFPGDKWLPDQLDTSRLLVRNAVVGGFLPIVKWAHEKGQELDSTLLGTAAVHGHFELVKYIHFKGLREYSIAAILHAALRGDLQTVKWLREKGYPWSDGICTLLARXXXXXXXXXXXXXXXXXGMLKISSVGPVIDEHVRTCLVEAGCPL 735
            QIDKDTS NNMVEYFENGMPVSEH   RAS LGRLDLFELAVEHGCV+SH  VEVAARCGHLRI+EYIWYVGSLC  CACTGAS GGQLDVLK LFPGDKW PDQLDTSRLLVRNAVVGGFLP+VKWAHEKGQELDS LLGTAAVHGHFELVKYIHFKGLREYSIAAILHAALRGDL+TVKWLRE+GYPWSDGIC LLARXXXXXXXXXXXXXXXXXGMLKI SVG VIDEH+RT LV+A CPL
Sbjct:   42 QIDKDTSLNNMVEYFENGMPVSEHPPFRASELGRLDLFELAVEHGCVISHGTVEVAARCGHLRIIEYIWYVGSLCPHCACTGASMGGQLDVLKWLFPGDKWFPDQLDTSRLLVRNAVVGGFLPVVKWAHEKGQELDSALLGTAAVHGHFELVKYIHFKGLREYSIAAILHAALRGDLRTVKWLREQGYPWSDGICMLLARXXXXXXXXXXXXXXXXXGMLKIGSVGHVIDEHMRTYLVDAQCPL 285
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17728.5368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QNQ7_ESV1K7.590e-14489.75EsV-1-2 n=1 Tax=Ectocarpus siliculosus virus 1 (is... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17728contigEcto-sp13_S_contig17728:1046..1783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size738
Hectar predicted targeting categoryother localisation
Exons1
Cds size738
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462919.8536894-CDS-Ecto-sp13_S_contig17728:1045..17831681462919.8536894-CDS-Ecto-sp13_S_contig17728:1045..1783Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17728 1046..1783 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17728.5368.1prot_Ecto-sp13_S_contig17728.5368.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17728 1046..1783 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17728.5368.1

>prot_Ecto-sp13_S_contig17728.5368.1 ID=prot_Ecto-sp13_S_contig17728.5368.1|Name=mRNA_Ecto-sp13_S_contig17728.5368.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=246bp
MQIDKDTSFNNMVEYFENGMPVSEHVLCRASALGRLDLFELAVEHGCVVS
HKAVEVAARCGHLRIVEYIWYVGSLCTQCACTGASKGGQLDVLKCLFPGD
KWLPDQLDTSRLLVRNAVVGGFLPIVKWAHEKGQELDSTLLGTAAVHGHF
ELVKYIHFKGLREYSIAAILHAALRGDLQTVKWLREKGYPWSDGICTLLA
RRGHLQALKYVRSHGCPWGMLKISSVGPVIDEHVRTCLVEAGCPL*
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mRNA from alignment at Ecto-sp13_S_contig17728:1046..1783+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17728.5368.1 ID=mRNA_Ecto-sp13_S_contig17728.5368.1|Name=mRNA_Ecto-sp13_S_contig17728.5368.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=738bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17728:1046..1783+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGATCGACAAGGACACGTCTTTCAACAACATGGTAGAGTATTTCGA
AAACGGGATGCCGGTATCAGAGCACGTGCTCTGCCGGGCGTCAGCGCTCG
GCAGGCTTGACTTGTTTGAGCTTGCGGTCGAGCACGGGTGTGTCGTCAGT
CACAAGGCCGTAGAAGTTGCCGCGCGGTGTGGTCATTTGCGGATTGTAGA
GTATATTTGGTACGTCGGCTCCCTATGCACGCAGTGCGCGTGCACCGGAG
CGTCAAAGGGTGGGCAACTCGACGTTCTGAAGTGCTTGTTTCCGGGGGAC
AAGTGGTTACCGGATCAACTAGACACGAGTAGGTTACTGGTCAGGAACGC
TGTCGTCGGGGGGTTTCTCCCAATTGTGAAGTGGGCGCACGAAAAAGGGC
AAGAGTTAGACTCGACGCTTCTCGGCACCGCGGCCGTACACGGTCACTTT
GAGCTTGTCAAGTACATCCACTTCAAAGGTTTGCGCGAATACTCCATTGC
CGCGATACTGCACGCGGCTCTGCGTGGAGATCTACAAACTGTGAAGTGGC
TCAGAGAGAAGGGCTACCCGTGGTCGGACGGCATCTGTACACTTTTGGCC
AGGCGGGGGCATCTACAAGCGCTCAAATACGTGCGTAGTCACGGGTGCCC
CTGGGGAATGTTAAAAATCAGTAGCGTCGGACCCGTCATCGACGAGCACG
TGCGCACGTGCCTGGTAGAGGCGGGGTGCCCTCTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17728:1046..1783+

>mRNA_Ecto-sp13_S_contig17728.5368.1 ID=mRNA_Ecto-sp13_S_contig17728.5368.1|Name=mRNA_Ecto-sp13_S_contig17728.5368.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=738bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17728:1046..1783+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGATCGACAAGGACACGTCTTTCAACAACATGGTAGAGTATTTCGA
AAACGGGATGCCGGTATCAGAGCACGTGCTCTGCCGGGCGTCAGCGCTCG
GCAGGCTTGACTTGTTTGAGCTTGCGGTCGAGCACGGGTGTGTCGTCAGT
CACAAGGCCGTAGAAGTTGCCGCGCGGTGTGGTCATTTGCGGATTGTAGA
GTATATTTGGTACGTCGGCTCCCTATGCACGCAGTGCGCGTGCACCGGAG
CGTCAAAGGGTGGGCAACTCGACGTTCTGAAGTGCTTGTTTCCGGGGGAC
AAGTGGTTACCGGATCAACTAGACACGAGTAGGTTACTGGTCAGGAACGC
TGTCGTCGGGGGGTTTCTCCCAATTGTGAAGTGGGCGCACGAAAAAGGGC
AAGAGTTAGACTCGACGCTTCTCGGCACCGCGGCCGTACACGGTCACTTT
GAGCTTGTCAAGTACATCCACTTCAAAGGTTTGCGCGAATACTCCATTGC
CGCGATACTGCACGCGGCTCTGCGTGGAGATCTACAAACTGTGAAGTGGC
TCAGAGAGAAGGGCTACCCGTGGTCGGACGGCATCTGTACACTTTTGGCC
AGGCGGGGGCATCTACAAGCGCTCAAATACGTGCGTAGTCACGGGTGCCC
CTGGGGAATGTTAAAAATCAGTAGCGTCGGACCCGTCATCGACGAGCACG
TGCGCACGTGCCTGGTAGAGGCGGGGTGCCCTCTGTGA
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