mRNA_Ecto-sp13_S_contig1772.5365.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1772.5365.1
Unique NamemRNA_Ecto-sp13_S_contig1772.5365.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1772.5365.1 vs. uniprot
Match: D7G265_ECTSI (Ammonium transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G265_ECTSI)

HSP 1 Score: 520 bits (1339), Expect = 1.670e-177
Identity = 263/282 (93.26%), Postives = 269/282 (95.39%), Query Frame = 3 
Query:  996 INDTDASYFTQMTGGMAALTGIFILGPRAGRFNEDGTSNTMPQQSAVLQTLGTFMLWWGWLGFNAGSVFSFVATPAVAAKVMGVTVIGGASGGITSLLVNKLQCGYWDTGSALNGILTGLVSITAGSGTYEPEGAFVVGVLGGVLYFFASSLLLRNHLDDVVNAAPVHLFGGMWGLVSAGLFSSKFAYAMAYSEDRSDKCAGILYGGSGSSLAANIIFLMAVVAWVGFLTLLLFVVTKLTIGIRVSKQQELAGMDDSKHGGQTFPELLPRRRTMDRPGSSFG 1841
            + D   S    MTGGMAAL GIFILGPRAGRFNEDGTSNTMPQQSAVLQTLGTFMLWWGWLGFNAGSV SFVATPAVAAKVMGVTVIGGASGGITSLLVNKLQCGYWDTGSALNGILTGLVSITAGSGTYEPEGAFVVGVLGGVLYFFAS+LLLRNHLDDVVNAAPVHLFGGMWGLVSAGLFSSKFAYAMAYSEDRSD CAGILYGGSG +LAANI+FLMAV+AWVG LTLLLFVVTKLTIGIRVSKQQELAGMDDSKHGGQTFPELLPRRRT+DRPGSSFG
Sbjct:  179 VTDFAGSGVVHMTGGMAALMGIFILGPRAGRFNEDGTSNTMPQQSAVLQTLGTFMLWWGWLGFNAGSVSSFVATPAVAAKVMGVTVIGGASGGITSLLVNKLQCGYWDTGSALNGILTGLVSITAGSGTYEPEGAFVVGVLGGVLYFFASNLLLRNHLDDVVNAAPVHLFGGMWGLVSAGLFSSKFAYAMAYSEDRSDTCAGILYGGSGGTLAANIVFLMAVLAWVGLLTLLLFVVTKLTIGIRVSKQQELAGMDDSKHGGQTFPELLPRRRTVDRPGSSFG 460
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BLAST of mRNA_Ecto-sp13_S_contig1772.5365.1 vs. uniprot
Match: A0A6H5J7X8_9PHAE (Ammonium transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7X8_9PHAE)

HSP 1 Score: 439 bits (1130), Expect = 5.460e-146
Identity = 219/271 (80.81%), Postives = 241/271 (88.93%), Query Frame = 3 
Query: 1029 MTGGMAALTGIFILGPRAGRFNEDGTSNTMPQQSAVLQTLGTFMLWWGWLGFNAGSVFSFVATPAVAAKVMGVTVIGGASGGITSLLVNKLQCGYWDTGSALNGILTGLVSITAGSGTYEPEGAFVVGVLGGVLYFFASSLLLRNHLDDVVNAAPVHLFGGMWGLVSAGLFSSKFAYAMAYSEDRSDKCAGILYGGSGSSLAANIIFLMAVVAWVGFLTLLLFVVTKLTIGIRVSKQQELAGMDDSKHGGQTFPELLPRRRTMDRPGSSFG 1841
            MTGGMAALTGIFILGPRAGRFNEDG+SNTMPQQSAVLQTLGTF+LWWGWLGFN GS+ SFV+ PAVAA+VM VTVI GASGGI+SL+ NK  CGYWDTGSALNGIL GLVS+TAG+ TYEPEGAFVVG++GG+LY FAS+LLL+ HLDDVVNA PVHLFGGMWGLV+AG F+SKF YA AYSEDRS +CAG+LYGGSGSSLAANIIFLMAVV WVG LTLLLFVVTKLTIGIRVSK+QE+AGMD SKHGGQT+PE     R +D P  S G
Sbjct:  190 MTGGMAALTGIFILGPRAGRFNEDGSSNTMPQQSAVLQTLGTFILWWGWLGFNGGSLPSFVSMPAVAARVMAVTVISGASGGISSLVANKRLCGYWDTGSALNGILAGLVSVTAGAATYEPEGAFVVGLIGGMLYVFASALLLKLHLDDVVNAVPVHLFGGMWGLVAAGFFASKFGYAAAYSEDRSGRCAGVLYGGSGSSLAANIIFLMAVVVWVGLLTLLLFVVTKLTIGIRVSKEQEMAGMDGSKHGGQTYPEFQSGLRCLDTPVLSVG 460
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BLAST of mRNA_Ecto-sp13_S_contig1772.5365.1 vs. uniprot
Match: D7FGY6_ECTSI (Ammonium_transp domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGY6_ECTSI)

HSP 1 Score: 317 bits (813), Expect = 3.140e-102
Identity = 160/201 (79.60%), Postives = 177/201 (88.06%), Query Frame = 3 
Query: 1239 MGVTVIGGASGGITSLLVNKLQCGYWDTGSALNGILTGLVSITAGSGTYEPEGAFVVGVLGGVLYFFASSLLLRNHLDDVVNAAPVHLFGGMWGLVSAGLFSSKFAYAMAYSEDRSDKCAGILYGGSGSSLAANIIFLMAVVAWVGFLTLLLFVVTKLTIGIRVSKQQELAGMDDSKHGGQTFPELLPRRRTMDRPGSSFG 1841
            M VTVIGGASGGI+SLLVN+  CGYWDTGSALNGIL GLVS+TAG+ TYEPEGAFVVG++GGVLY FAS+LLL+ HLDDVVNA PVHLFGGMWGLV+AG F+SKF YA AYSEDRS  CAGILYGG+GSSL A+I+FLMAVVAWVGFLTLLLFVVTKLTIGIR+SK+QE+AGMD SKHGGQT+PEL P  R  D P  S G
Sbjct:    1 MTVTVIGGASGGISSLLVNQRLCGYWDTGSALNGILAGLVSVTAGAATYEPEGAFVVGLIGGVLYLFASALLLKFHLDDVVNAVPVHLFGGMWGLVAAGFFASKFGYAAAYSEDRSGTCAGILYGGNGSSLGASIVFLMAVVAWVGFLTLLLFVVTKLTIGIRISKEQEMAGMDVSKHGGQTYPELQPGLRGPDTPVLSVG 201
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BLAST of mRNA_Ecto-sp13_S_contig1772.5365.1 vs. uniprot
Match: D7FR22_ECTSI (Ammonium transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR22_ECTSI)

HSP 1 Score: 290 bits (742), Expect = 5.640e-88
Identity = 141/268 (52.61%), Postives = 188/268 (70.15%), Query Frame = 3 
Query:  996 INDTDASYFTQMTGGMAALTGIFILGPRAGRFNEDGTSNTMPQQSAVLQTLGTFMLWWGWLGFNAGSVFSFVATPAVAAKVMGVTVIGGASGGITSLLVNKLQCGYWDTGSALNGILTGLVSITAGSGTYEPEGAFVVGVLGGVLYFFASSLLLRNHLDDVVNAAPVHLFGGMWGLVSAGLFSSKFAYAMAYSEDRSDKCAGILYGGSGSSLAANIIFLMAVVAWVGFLTLLLFVVTKLTIGIRVSKQQELAGMDDSKHGGQTFPELL 1799
            + D   S    MTGG+AAL    ++GPR GRFNEDGT+NT+PQQSAVLQ+LGT +LW+GW GFN  S    V    VAAK M  T I  A G +T++L+ K   G+WD G+A NG+L GLV +TAG  T EPEGA V+G++ G +Y ++S +L+   +DDVV+A PVH F G WG+ +A LF++K  Y MAY  DR+DKCAG  YGG+G+++ AN +F++AV AWV      LF+  K+T+G+RV K+ E  GMDDSKHGGQT+PE++
Sbjct:  190 VIDFAGSGVVHMTGGLAALCAAIVVGPRTGRFNEDGTANTLPQQSAVLQSLGTLILWFGWYGFNGVSTLYIVGFAGVAAKTMVTTTISAAFGAVTTVLLGKFNLGHWDGGAANNGLLAGLVGVTAGCSTCEPEGAMVIGIISGFVYTYSSKMLVMLKIDDVVDAIPVHCFCGAWGVFAASLFATKDNYGMAY-YDRADKCAGAFYGGAGNAVGANFVFILAVTAWVVATCTALFMGIKMTVGMRVDKEMEQIGMDDSKHGGQTYPEMM 456
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BLAST of mRNA_Ecto-sp13_S_contig1772.5365.1 vs. uniprot
Match: D7G888_ECTSI (Ammonium transporter (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G888_ECTSI)

HSP 1 Score: 280 bits (716), Expect = 2.450e-87
Identity = 139/166 (83.73%), Postives = 151/166 (90.96%), Query Frame = 1 
Query:    4 SATDVALAVDTAWVLLGAAMVFFMQARIKTSAGFAMLEVGSVSIKNTKNILIKNIGDSAMGAIGWWLFGNGLAFGRDSGGFVGVTGFALKGEDLYGTSTGDFDALSYANWLFQWTFAASATTIVSGAMAERATFGAYVLHSFLLTSFIYPIVAHWAWSDGGWASAR 501
            S  DVA+AVD+ WVLLGA+MVFFMQ      AGFAMLE GSVSIKNTKNILIKNIGDSAMGAIGWWLFGNGLAFG+DSGGF+G TGFALK E ++GT++GDF +LSYANW+FQW FAASATTIVSGAMAERATFGAYVLHSFL+TSFIYPIVAHWAWSDGGWASAR
Sbjct:    7 SVADVAVAVDSLWVLLGASMVFFMQ------AGFAMLEAGSVSIKNTKNILIKNIGDSAMGAIGWWLFGNGLAFGKDSGGFLGTTGFALKDESMFGTTSGDFVSLSYANWIFQWAFAASATTIVSGAMAERATFGAYVLHSFLITSFIYPIVAHWAWSDGGWASAR 166
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BLAST of mRNA_Ecto-sp13_S_contig1772.5365.1 vs. uniprot
Match: D7G243_ECTSI (Ammonium transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G243_ECTSI)

HSP 1 Score: 283 bits (723), Expect = 4.180e-85
Identity = 137/268 (51.12%), Postives = 184/268 (68.66%), Query Frame = 3 
Query:  996 INDTDASYFTQMTGGMAALTGIFILGPRAGRFNEDGTSNTMPQQSAVLQTLGTFMLWWGWLGFNAGSVFSFVATPAVAAKVMGVTVIGGASGGITSLLVNKLQCGYWDTGSALNGILTGLVSITAGSGTYEPEGAFVVGVLGGVLYFFASSLLLRNHLDDVVNAAPVHLFGGMWGLVSAGLFSSKFAYAMAYSEDRSDKCAGILYGGSGSSLAANIIFLMAVVAWVGFLTLLLFVVTKLTIGIRVSKQQELAGMDDSKHGGQTFPELL 1799
            + D   S    MTGG+AAL    ++GPR GRFNEDGT+NT+PQQSAVLQTLGT +LW+G       S  +      VAAK M  T I  A G +T++L+ KL  GYWD G+A NG+L GLV +TAG  T EPEGA V+G++ G +Y ++S +L+   +DDVV+A PVH F G WG+ +A LF++K  Y+ AY  DR DKCAG  YGG G+++AAN++F++AV+AWV    + LF+     +G+RV K+ E  GMDDSKHGGQT+PE++
Sbjct:  194 VIDFAGSGVVHMTGGLAALAAAIVVGPRTGRFNEDGTANTLPQQSAVLQTLGTLILWFGXXXXXXVSTLAINGLAGVAAKTMVTTTISAAFGAVTTVLLGKLNLGYWDAGAANNGLLAGLVGVTAGCSTCEPEGAMVIGIISGFVYTYSSKMLVMLKIDDVVDAIPVHCFCGAWGVFAASLFATKDNYSAAYYGDRVDKCAGAFYGGDGNAVAANVVFILAVIAWVSATCMALFLGINAVVGMRVDKEMEQIGMDDSKHGGQTYPEMV 461
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BLAST of mRNA_Ecto-sp13_S_contig1772.5365.1 vs. uniprot
Match: A0A835ZI90_9STRA (Ammonium transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI90_9STRA)

HSP 1 Score: 249 bits (636), Expect = 5.880e-72
Identity = 129/261 (49.43%), Postives = 168/261 (64.37%), Query Frame = 3 
Query:  996 INDTDASYFTQMTGGMAALTGIFILGPRAGRFNEDGTSNTMPQQSAVLQTLGTFMLWWGWLGFNAGSVFSFVATPAVAAKVMGVTVIGGASGGITSLLVNKLQCGYWDTGSALNGILTGLVSITAGSGTYEPEGAFVVGVLGGVLYFFASSLLLRNHLDDVVNAAPVHLFGGMWGLVSAGLFSSKFAYAMAYSEDRSDKCAGILYGGSGSSLAANIIFLMAVVAWVGFLTLLLFVVTKLTIGIRVSKQQELAGMDDSKHGG 1778
            + D   S    MTGG+AAL G  ++GPRAGRF   G    +PQ S V Q +GT  LW+GW GFN  S         VAAKVM  + + GA GG++S LV  L  GY D  +A NGIL+G V+IT  SG  +PEGA ++G + G++Y  AS+LLL+  +DDVVNAAPVHLF GMWG+ + GL + +  Y  AY EDR+D C G  YG  G+ LAA I+F++  +AW G  + ++F V K T+G+RVSK+ E  GMD SKHGG
Sbjct:  204 VVDFAGSGVVHMTGGVAALVGAVMVGPRAGRFGPSGEVRALPQLSWVYQAIGTLFLWFGWYGFNGVSTLLITGKGLVAAKVMINSTLSGAIGGLSSTLVALLMNGYIDPAAANNGILSGFVAITGPSGVVQPEGALLIGFIAGLIYQGASNLLLKLRIDDVVNAAPVHLFCGMWGMFAVGLLAEEHNYGRAYYEDRADICCGAFYGCGGNQLAAQIVFILVNLAWTGVTSAIMFTVAKYTVGLRVSKEVEEMGMDSSKHGG 464
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1772.5365.1 vs. uniprot
Match: A0A835ZB85_9STRA (Ammonium transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB85_9STRA)

HSP 1 Score: 243 bits (619), Expect = 1.760e-69
Identity = 127/261 (48.66%), Postives = 165/261 (63.22%), Query Frame = 3 
Query:  996 INDTDASYFTQMTGGMAALTGIFILGPRAGRFNEDGTSNTMPQQSAVLQTLGTFMLWWGWLGFNAGSVFSFVATPAVAAKVMGVTVIGGASGGITSLLVNKLQCGYWDTGSALNGILTGLVSITAGSGTYEPEGAFVVGVLGGVLYFFASSLLLRNHLDDVVNAAPVHLFGGMWGLVSAGLFSSKFAYAMAYSEDRSDKCAGILYGGSGSSLAANIIFLMAVVAWVGFLTLLLFVVTKLTIGIRVSKQQELAGMDDSKHGG 1778
            + D   S    MTGG+AAL G  ++GPR GRF  +G    +PQ S V Q +GT  LW+GW GFN  S    V    VAAK M  + + GA GG++S LV ++  G+ D  +A NGIL+G V+ITAGSG  +PEGA ++G + G++Y   S LLL+  +DDVVNAAPVHLF GMWG+ + GL +    Y   Y EDRS  C G  YG  GS L A I+F++  +AW G  + L+F V K T+G+RVSK+ E  GMD SKHGG
Sbjct:  199 VVDFAGSGVVHMTGGVAALVGAVMVGPRFGRFGPNGEVRALPQLSWVYQAIGTLFLWFGWYGFNGVSSLYIVGKGLVAAKTMINSTLSGAIGGLSSTLVAQVLDGFIDPAAANNGILSGFVAITAGSGVAQPEGAILIGFIAGIIYQATSKLLLKLRIDDVVNAAPVHLFCGMWGMFAVGLLAEPNNYGRVYYEDRSGICCGAFYGCGGSQLGAQIVFILVNLAWTGVTSALMFTVAKYTVGLRVSKEIEELGMDTSKHGG 459
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BLAST of mRNA_Ecto-sp13_S_contig1772.5365.1 vs. uniprot
Match: A0A7S1UFZ4_9STRA (Ammonium transporter n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UFZ4_9STRA)

HSP 1 Score: 241 bits (614), Expect = 8.930e-69
Identity = 122/265 (46.04%), Postives = 172/265 (64.91%), Query Frame = 3 
Query: 1002 DTDASYFTQMTGGMAALTGIFILGPRAGRFNEDGTSNTMPQQSAVLQTLGTFMLWWGWLGFNAGSVFSFVATPAVAAKVMGVTVIGGASGGITSLLVNKLQCGYWDTGSALNGILTGLVSITAGSGTYEPEGAFVVGVLGGVLYFFASSLLLRNHLDDVVNAAPVHLFGGMWGLVSAGLFSSKFAYAMAYSEDRSDKCAGILYGGSGSSLAANIIFLMAVVAWVGFLTLLLFVVTKLTIGIRVSKQQELAGMDDSKHGGQTFPEL 1796
            D   S    MTGG+AAL+G    GPR GRF  +G  N++P+Q+ +   LGTF+LW GW GFN  S         VAAKVM V+ IG A+ G +S++ +K      D G+ALNG+L GLVSIT      EP GAF++G++GGV+Y  ++ LL    +DD VNAAPVH+F GMWG+++AGLF+++  Y+ AY  DR++ CAGI YGG+GS+L ANI F++ ++ WVG  T ++F   K    +R++ +Q+  GMD  +HGG  + E 
Sbjct:  203 DFAGSGVVHMTGGVAALSGAIWAGPRNGRFGPNGEVNSLPEQNPIFAALGTFILWVGWYGFNGASTLYITHYSGVAAKVMVVSTIGAAAAGFSSVIFHKFMHNTVDLGAALNGVLGGLVSITGACAVIEPYGAFIIGLIGGVVYQLSAMLLESLKIDDCVNAAPVHMFCGMWGVIAAGLFATEQNYSNAYYSDRAEDCAGIFYGGNGSTLGANICFMICIILWVGATTSVMFGSLKAAGLLRLTDEQQATGMDILEHGGPAWVEF 467
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1772.5365.1 vs. uniprot
Match: D7G242_ECTSI (Ammonium transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G242_ECTSI)

HSP 1 Score: 239 bits (610), Expect = 1.640e-68
Identity = 118/240 (49.17%), Postives = 166/240 (69.17%), Query Frame = 3 
Query: 1101 GTSNTMPQQSAVLQTLGTFMLWWGWLGFNAGSVFSFVATPA-VAAKVMGVTVIGGASGGITSLLVNKLQCGYWDTGSALNGILTGLVSITAGSGTYEPEGAFVVGVLGGVLYFFASSLLLRNHLDDVVNAAPVHLFGGMWGLVSAGLFSSKFAYAMAYSEDRSDKCAGILYGGSGSSLAANIIFLMAVVAWVGFLTLLLFVVTKLTIGIRVSKQQELAGMDDSKHGGQTFPELLPRRRTM 1817
            G  +   Q S + QTLG  +LWWGW GFN  S  +     A +AAKVM +T I  A G IT+ ++ K++ GYWD+G+A NG+L GLV ITAG  T EPE A V+G++   +Y ++S L+L+  +DDVV+A P+H F G+WG+++  LF++K  YA  YS +R+DKCAG  YGG GS+LA  ++FL+A++AW     + LF+  K TIGIRVS++ E  GMDDSKHGGQT+PE++  R+T+
Sbjct:  230 GRRSACDQCSFLGQTLGILILWWGWYGFNGVSTLTLSGGGATIAAKVMVITTISAAFGAITNSVIGKVRLGYWDSGAANNGLLAGLVGITAGCSTCEPEAAMVIGIVAAFVYTYSSKLMLKLQIDDVVDAVPIHFFCGVWGVIAVSLFATKDNYANVYSAERADKCAGAFYGGDGSTLAVGLVFLLALIAWTVVTCMALFLGIKYTIGIRVSQEVEQIGMDDSKHGGQTYPEMV--RKTL 467
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1772.5365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G265_ECTSI1.670e-17793.26Ammonium transporter n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A6H5J7X8_9PHAE5.460e-14680.81Ammonium transporter n=1 Tax=Ectocarpus sp. CCAP 1... [more]
D7FGY6_ECTSI3.140e-10279.60Ammonium_transp domain-containing protein n=1 Tax=... [more]
D7FR22_ECTSI5.640e-8852.61Ammonium transporter n=1 Tax=Ectocarpus siliculosu... [more]
D7G888_ECTSI2.450e-8783.73Ammonium transporter (Partial) (Fragment) n=1 Tax=... [more]
D7G243_ECTSI4.180e-8551.12Ammonium transporter n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835ZI90_9STRA5.880e-7249.43Ammonium transporter n=1 Tax=Tribonema minus TaxID... [more]
A0A835ZB85_9STRA1.760e-6948.66Ammonium transporter n=1 Tax=Tribonema minus TaxID... [more]
A0A7S1UFZ4_9STRA8.930e-6946.04Ammonium transporter n=1 Tax=Phaeomonas parva TaxI... [more]
D7G242_ECTSI1.640e-6849.17Ammonium transporter n=1 Tax=Ectocarpus siliculosu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1772contigEcto-sp13_S_contig1772:5..7659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score520.0
Seed ortholog evalue6.6e-145
Seed eggNOG ortholog2880.D7G265
Preferred nameamt-1
Model size1381
KEGG koko:K03320
KEGG TC1.A.11
Hectar predicted targeting categorysignal peptide
Exons10
EggNOG free text desc.ammonium transmembrane transporter activity
EggNOG OGsCOG0004@1,KOG0682@2759
Cds size816
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1772.5365.1prot_Ecto-sp13_S_contig1772.5365.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1772 5..3948 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462919.5465286-CDS-Ecto-sp13_S_contig1772:4..1291681462919.5465286-CDS-Ecto-sp13_S_contig1772:4..129Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1772 5..129 -
1681462919.5636234-CDS-Ecto-sp13_S_contig1772:810..10631681462919.5636234-CDS-Ecto-sp13_S_contig1772:810..1063Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1772 811..1063 -
1681462919.5740383-CDS-Ecto-sp13_S_contig1772:1828..20591681462919.5740383-CDS-Ecto-sp13_S_contig1772:1828..2059Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1772 1829..2059 -
1681462919.58515-CDS-Ecto-sp13_S_contig1772:3215..33081681462919.58515-CDS-Ecto-sp13_S_contig1772:3215..3308Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1772 3216..3308 -
1681462919.5985472-CDS-Ecto-sp13_S_contig1772:3834..39481681462919.5985472-CDS-Ecto-sp13_S_contig1772:3834..3948Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1772 3835..3948 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462919.6092362-UTR-Ecto-sp13_S_contig1772:4411..45281681462919.6092362-UTR-Ecto-sp13_S_contig1772:4411..4528Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1772 4412..4528 -
1681462919.6191368-UTR-Ecto-sp13_S_contig1772:4938..50131681462919.6191368-UTR-Ecto-sp13_S_contig1772:4938..5013Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1772 4939..5013 -
1681462919.6293218-UTR-Ecto-sp13_S_contig1772:5896..61071681462919.6293218-UTR-Ecto-sp13_S_contig1772:5896..6107Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1772 5897..6107 -
1681462919.6586983-UTR-Ecto-sp13_S_contig1772:6379..64451681462919.6586983-UTR-Ecto-sp13_S_contig1772:6379..6445Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1772 6380..6445 -
1681462919.6698213-UTR-Ecto-sp13_S_contig1772:7563..76591681462919.6698213-UTR-Ecto-sp13_S_contig1772:7563..7659Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1772 7564..7659 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1772.5365.1

>prot_Ecto-sp13_S_contig1772.5365.1 ID=prot_Ecto-sp13_S_contig1772.5365.1|Name=mRNA_Ecto-sp13_S_contig1772.5365.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=272bp
MTGGMAALTGIFILGPRAGRFNEDGTSNTMPQQSAVLQTLGTFMLWWGWL
GFNAGSVFSFVATPAVAAKVMGVTVIGGASGGITSLLVNKLQCGYWDTGS
ALNGILTGLVSITAGSGTYEPEGAFVVGVLGGVLYFFASSLLLRNHLDDV
VNAAPVHLFGGMWGLVSAGLFSSKFAYAMAYSEDRSDKCAGILYGGSGSS
LAANIIFLMAVVAWVGFLTLLLFVVTKLTIGIRVSKQQELAGMDDSKHGG
QTFPELLPRRRTMDRPGSSFG*
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mRNA from alignment at Ecto-sp13_S_contig1772:5..7659-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1772.5365.1 ID=mRNA_Ecto-sp13_S_contig1772.5365.1|Name=mRNA_Ecto-sp13_S_contig1772.5365.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7655bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1772:5..7659- (Ectocarpus species13 EcNAP12_S_4_19m)
ATTTCTGCGACGGACGTGGCCCTGGCCGTCGACACCGCATGGGTCCTGCT
GGGAGCTGCGATGGTCTTCTTCATGCAGGCGAGGATTAAAACATCCGTTG
CTACTGCTGTTGTCCGAGATGTTGCACATCGCGTTCCTTCATGTTGGCTG
CCCAAACGCGCTCAAGGGGAGATGGATAGACCCAAGCGTCGGAGGAGAGA
GGGGGGGTACTCATGTAGCAGCATGCCGTCGTCGGTAGACCGTTGACCTC
GCATTCCGACAATGCCGGGACTGAGTGATATTGCGTTTTTTCGCCGGCCC
AGGCAACGTTTCATGAGCATGATCCCGAGAGGTCGGGGGGGGGGGGGGGG
GGGGGGGCGGTAGTTTTCTAGGTGTACGTTTTACCAGCTACGGTATTTCG
ACAGGGACGGAGCAAGCAAAGGCTTGAAGGAGTGGAGCATGCACACATAG
GAGTAGGTGGGGCGGGAAGAATCACTTCAGCGTGTGTGCGTGTGTACCCG
AAAGGCTGCTACGGGCAACGGGGCTTGTGATGCCGGATGATATCTCTGCA
CTGAACAGGCCGTGTTGTTGTTGAAAACCTTCTTTTCGTCATCGATATTC
CGCCTGCCCCGTCAACATCGTGCTCCCCTTGGGCGTAGAACCCTGAGGTT
TTGTTGAGAGTCGTTTGGTTTCTGGTGAAGCACCTGCAGCCAGAATCCAA
AAACGAGAATGTGAGAGCTTTCCTCCATTTCATGCGATGGCTACTGACGA
GAACCGTAGCCAACAAGAGAGCGAAAAAATTACCGGGAGCTCGAGGGATG
CGATGTCGATGGGAGTGTAAACACGGTGGCTCTAAGAAGTGCATCGGTTT
TTTGTTGCACGCATGTCCTACGTGAGGTGTGCGCGACGATCCCGACCGGC
CCGCCATGCACACACAAAGAAGGAGAGAGACACGCAGAGAGAGACAGAAA
TAGAGGTAGAAAGAGAGCTATTTGCCTTGGGGCGTTTGGGACCAGGTTTT
CGTTGTCGTCATCTTGGATGAATGAACTACCGCTGCTCCACCTGACGGTT
TTCAAGAGTGCGGCGTTTCGACTAACCATAACCGTTTCGACTCGATTATG
GACCTGACCCACTCCTTGCAGTTATTTATATACTTTGTCGATGCTGTTGC
CGCCTCTTACATAATCACGGTCTGCCTGCATGCCGGCGGAAAACCCCGAA
CCGTTTTCCCGCAGGCTGGCTTCGCGATGCTGGAGGTCGGGTCGGTCAGC
ATCAAGAACACGAAGAACATCCTCATCAAGGTCCGTCCGTCGGCGCGTGG
ATGGCGATGTGCCACTGTACAATTAATGCGTGATGACGGTTCCTCCACCT
GGTACAAAGCAGCCCCTCGATCGAGACTCTCGCTACAGTAGGATCGAAAC
ACGCGAAGTGCGATGCCATGTCGTCGTCGGCAGGGTGCGTCCTGTAGCTT
TGTGTTGGAAGGGAGTAGGAGCGATGTTCCGAGTTGAAAATGGACTAAAT
GATCGTGCAAAAATATGGACGTCCCTTCCCCTCCAAAAAAAACACTTGTC
AGAATATCGGAGACTCGGCGATGGGGGCGATCGGGTGGTGGCTATTTGGT
AACGGGCTAGCCTTCGGGCGGGATAGCGGAGGCTTTGTTGGGGTCACCGG
CTTCGCCCTGAAGGGCGAGGACCTGTACGGCACGAGCACGGGGGACTTCG
ATGCCTTGTCGTACGCGAACTGGCTCTTCCAGTGGACCTTCGCCGCCTCT
GCGACGACGATCGGTAAGAGCCTCATTGGTCGGTTCATTTTTTGCCATTG
CGTAAGGTTTTGGGGGTGCAGCACCTAGGTTGCGACAGCCACGTCTGTTT
CGGAACACCACTTACAAAATGTTTTGTTGTTGTTATCGTTGTTGTACTCT
CAGAATCGCAGCGTTTTTGCGTCTCTAACATTGTCGGGAGCGCGAGGCCC
GCACACCCTCGGACTGGTGGGCACCTGGAGGAATTGTTTCGGTTGGCTTA
CCGATGAGGGAGGCGATCCTTAACTTTCGTCCCCTCAATCATGTTGATGT
TCGTCGGCATGCACATTGCTCTCGCGTTGTTCACCTGTAGTAACAACTTA
CAGACCACGAAGAAGGCATAGATTTGACACACAAAAAAACATGACGTCAC
TGGTATGTTGGCTCCCCTTTGTGGGCGGTCGTGGTGTTCTCCCTCGATGT
ATCGAAAAATCGAGATACCCTCATCGTACTTTGTACTTTTTCGGGTTTCT
ATCTGGTGCGGGTTTGCCGTATCGCTGGGTTTTAAACCCCTCTTTTTCGT
GAGGTTTTGATTTTGCCTTTTTAGCATAGCCCTCATTCGTTCTTGCCGGC
GATATTCCGTGAAGCAAGCGTGTTGCTGCCGTGGACGATGAAATTGTCTC
AGTGTTGCTTGCGTCGTCTCGGGTACTTGGCCTCTATCACGTGGTGCACG
GAGGCAACAAACAAACGAGCAACAATTGCAGAAACAATGGAAAACAGCAA
CGACCGCAAACCATGGTATTGTCAACAGCATCAGTTCGTCAACGATGCAT
GATTGTCCCTGTCTTGTCTCGTTCTCGTTATGTTCTGCTAATTTCGGTGG
CTCTTTTTGTCTGTGTCTGTTTTGCTGTCGACAATTGTCCAAATAGTGTC
CGGCGCAATGGCGGAACGCGCGACGTTTGGAGCGTACGTCTTGCATTCCT
TCCTGCTGACGTCCTTCATATGTGAGTGGTATGGGGCTCGGGTGGTGTCA
AGAGGTTGTGCACACGTGAACACAGTTCAGCCAGGGAGTAAAGCAACGGA
AGGAGTATATCCCGTGATAGAAGATCAAGCTCCGTGTGGCACCGTACCAT
TCTTGGTGCATGGCCTCCGTACGACAAAGCGTCGTCCGTTGCTGCACTCA
AGTTGTTTGATCGAAGAAGCGCGCTGACCCTACCTACCATCCGTGGTCTG
GCCGTTGTCTTCTTTCTTCATCCCCAGATATTCACTGCTGCTCGCAGTTC
CTAGCTAACCATGCGGCCTTAAAGCGAAACTGCCCAACCGGGCGCGTGAG
CGTTGCACTTTCACCAATATATGTCGCATTTTTTTCTTCTGTTTCGCGTT
CTTGTTGCTGTTGTGTCGTTTTTTCTTGCAGATCCCATCGTGGCTCACTG
GGCCTGGTCCGACGGTGGCTGGGCCAGCGCCCGCTGACGACGACGACCTC
CTCTTCGGTTGCGGCGTGACAGACTTCGCCGGCTCCGGCGTCGTACATGT
GGGTTCTCGCGACACCGCTGTCCCCTGGTCGTCTCGCTTGAAGTTCTCCA
TGCCCCCGGCCGGGCCCCCCTCAACAGAGTATCGTTCAGATGTGCAGCTT
GATGTGATGATGACTCTTTGCTGTGCGTGTGGCCGCGGTAGAGTTTGCCC
TGGCTCGTCGAGTAAGTCTTGGTTGATGGCGATAGTGCGCTGAACACGTT
GGAAGTATGAATGAAGTCAAATGTGTTACGCACTTCCCGAATTCATTACA
ATGATGCAGCGGTACCACCGTAATAATGATAACGGGAATCTCCTGCGAGG
ATTTAGGACGGACGGTTGCCCGAGCCAAGCTGCGTCGCCAATAAATACTC
CTGTGAAGTCGTCTGGTAGGCAGTCAGTGACGATGGTAGCGCCCTCAACA
CGCGATGATAACGCGCCAAGTTGTGGCCATCAACGACACTGACGCGTCGT
ATTTTACTCAGATGACGGGAGGGATGGCAGCCCTCACAGGGATCTTCATC
CTCGGCCCTCGCGCTGGAAGGTTCAACGAGGACGGCACCAGCAACACCAT
GCCCCAGCAGTCCGCAGTGCTCCAGGTGGGCCAGCGTTGTTAAGAATCTG
CATGTATCGAGGGGCTGCTGGCATTCGCCTCCTTGTTTTTGGCTTTTGGG
GGGCTTTACAAGTTTGTTTTTGTGTTGTTCGAGGAATAGACGGGAAAATA
CCTTCGATTTCATCGAGAGGGCAAGCGGACTGTGCGTCGTTTTATTGCGT
CCCGGAGGACACAAGCGGACAACTGTGCTGTATTGGCTTGCTGCACTTAG
CTCACTCGACAGAGTTGACCACTATGGGCTCAAAGAGCCGCTGCAAATTT
ATGGGAAGCCAATTAATTGCTGGTGTTCCGGCCGGCAGCCAGCAGTTCGT
TCAGAGTGAAACTTCGCGGCGTTTTTCTGAGTTTCTCGTCTACATTGGTT
GGAAAATGTACCTGTGCGTGCTTGTCCCTTTTCCTCCATCAATTGTGCTG
GCCAGGCGCTGGTGGTGATACCCCCCTCCCCCCCCAGCGCGTTTCGGGTA
TTTTGTTCTGACCCAATTCTCCTTTCGCTTCTCATTCCCTCCCCTCCGCA
GACGCTAGGGACGTTCATGCTCTGGTGGGGGTGGCTCGGATTTAACGCGG
GGTCGGTGTTCTCTTTCGTGGCCACACCGGCCGTGGCTGCCAAGGTGTGT
CGGGGGGAAATCGGAAACGAAAGAAAACCAACTCGTACCCTAAACCACGC
TCTCTTTCTCATTCTCCACTTGTTTTGTGTCGGCCGCATTGCTACGCTCG
CCATCGCCGGCCACCTGACCTACCAGAACACCCGCCTTCCAGGCATGCTC
TCCAACTCGGCTAACCTCTCCCTCGTTCCATCTCCCGCAAACCGCACACA
TGCCTTTTCCCCCTCTTGTCCTCGCCGGTACAGTTGTTGCAACTCGTGAT
CTCTGTCGCCTGTCTCGCCGCGGCTATAAACGAAGCCTATCTCTCGTCAC
TCCTTTCTCGCTGTGTCTGTTTGTCCTCTTAGACCCCCTTCGCTGCCTTA
CCACGAGCAAACACACACGTTGAGCTTGACTCTGTCTCTTCTCGTCCGGG
GGGTCTCTTTCAACAGCCATACACACAGAAACCGGACGAAAGACACTCCC
TCCCCACTGGTGGCTCCGTTGGTTGTGTAAGATATCACCCCCCCTGCATC
AATTATTGAAGCTCGACTTCACGACAAAGAGAATGCCGTGCTAAAATGAC
GCATTTTCGCGACGCTCTCGACGAGACGGTTCCAACGGCGCCATTTTTCG
GCAACGTCACTCCGTTTGGGCTGCAGAGCAATCGACCTTTGAAAATCGGT
CCACCGGGTGTGCCAACTTGTGCAACCCACGGTAGTCGACGGTGTTCATG
CGTGACTGAATGATGGATAGTCTCCAAATAAGCAACACGCACAACGTTTA
CGCACCTCATCCGGAGTGGACTGGCCAGTCACGAAACCCAGCGGAGTACT
CAGCATCAATGGCTGTTATGGTCCATATGCCCTCCCCCGTTCCTTCCCCG
CTCTTTCCGCATGAAACGGTGCGATTCATGTCACCGGCCTAGACAGGCAC
CTCCTTACTCTCTGCCTCGCCCCCCCCCCCCCCCCCAAGCAGGTCGTTCA
TCGCATAGACACGCGCTCTGTGAACGTTCGGCCCGTATCTGTCATTGTCT
GTTGTGTTCAGTACCAGTCTTCTTCGCACCCCTTCCCTCCGCGCCGCTTG
TATCGCTCCAAAACCCGCTCACAAACCCTGATATATTGTCTCCCCCACCG
CCCCCTCCCCTCCGTGAACGAAATCACTGCTGCTGATGCCGTCGCCGCAG
GTGATGGGGGTCACGGTCATCGGCGGTGCCTCCGGCGGTATCACCTCCCT
CCTCGTCAACAAGCTGCAGTGCGGGTACTGGGACACCGGGAGCGCCTTGA
ACGGCATCCTCACCGGCCTCGTGTCCATCACCGCCGGCTCGGGGACCTAC
GAGCCCGAGGGCGCCTTCGTCGTGGGCGTCCTTGGCGGTGTGCTGTACTT
CTTCGCGTCCAGCTTGCTGCTCAGGAATCACGTGAGACATGTTCTGCGAT
GAGGGTCTGGTATGCAGCCATCCCCGTTGCTCTTATTCTTTCAAGTGTTT
TCATTTTCCGTGAAGACTCACTGAAGACGGGACATTTAATCCCCCAAAAT
GAGCACGTTCAAGTATCTATTGAACGGTAACAAACACCCGTTTGCTGTTC
CCATTACCTTGTTTTGTGGGAGGTCGAAAAGAGGGGAAAAATAATGTGTT
TCCAAGTATTTATTTAACGTCAACGAACACATTTCACCTGTTCTTATTGC
GGTGTTTTTCGGGAGGTCGTAGAGACGGGAATGATTCATCTTTTGTTGCA
CCAATCCTTTCCCTAGATATCTCGGCGAGAGGCGTGTTTATTAATCGCTT
TGGGATTGGTCTACTTGTTCCTGCCATTGTCACGTTTCACTTGTTGTGCG
AGTCAAGGTGTGCGTGGACCGTAGACAGAGGATCAGCAAAGGTCTCTTGC
TTGTGGCCGGCAGCAGGACGGTAGGTAGCCTTCGATGATGTCACGCACAT
TCGGGGCCATGGTCATGATGGTCGTCCGCGACAGGTCGGCGCCATCTCTC
ATGATGCCACGCGTAGGGGCGCCCTTCGAAGGCCCACAGGGACAACTAAC
TGGTCAAACCTGTGTGTCTGTGGGCCCATTCACTACAATACAAGAACTCC
CACGCCATATCAAAGGTAGTAAGCAACCTTAAGTGCCCTCGATCTCCATA
AACGTACTGAGCGCCGCTCTCAACAACTCCTTCCTCCACCCTCCAGTTGG
ACGACGTCGTAAACGCCGCCCCCGTGCACCTATTCGGAGGCATGTGGGGC
CTCGTTTCGGCGGGTCTTTTCTCGTCCAAGTTCGCCTACGCGATGGCCTA
CTCCGAGGATAGGTCGGACAAGTGCGCCGGCATTCTGTATGGAGGCAGCG
GCAGCTCTCTCGCGGCGAACATTATCTTTTTGATGGCGGTAGTGGCCTGG
GTGGGCTTCCTGACCCTCTTGCTCTTCGTGGTGACGAAGCTGACCATAGG
TGAGATGGACGGGAGAGAAAGAAACCGAGAGACGAGAGGTAGAATAGCAG
CAGGAAAATATGGGCTCATGTGCCGCAGGTAGTTGGGGAGCGATTTAGAC
GGCGCTGCTGCTGTTAGCGATGTTGTTGACAGAGGAGAACGCGTCCCGAT
GCCACGCTTTTCAGTAGATGCATCCGTGACTTTTGCAGGGTGCAGCAACC
CCCCCCCCCTTGTCTTGCTGGACGTGCCGGGCTATTGCCTATTACCTGAT
GGTGGTGGTGCTTGTCACGTGTGTACGTTGACCGCCACAATCTACTGCGC
ACAAACTAGGGGTATACTGTTTCCTTCTGTTCGACCCCTCGTGACACTCT
GCTGAGGCGCGCAGTGGGCTTCGTTGGTTTGTCAATATTTCTGCCCGGGA
TAGTGCAGTACCAACTCTACAGGCAGCTGCAGCAGCATCACCACCACCAC
CACAGCAACAGGCTTGCAAGAATACGACAGCAGACTGCATTCCAACTTTT
ACTTCCTGCTGTTCTCTTTTTGCCCGACAACGATAGCAGCCTTCCCCGCC
TCAAAGTGCGAAGTAGGAAGCGTCATTTCCCTTGGCAACTTTGGCTCGTC
TCTTTACGCTGGGTCGCTCGGCGGCGGGGTCTGCGGCGGCGGCGGCGCGT
TTTCTTGCTTTTCCGTTTGTTCTTGAACAGGCATTCGCGTGAGCAAGCAG
CAGGAGCTGGCCGGCATGGACGACTCCAAGCACGGCGGACAAACGTTCCC
CGAACTCCTACCCCGTCGGCGGACCATGGACAGGCCCGGCTCGTCGTTTG
GGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1772:5..7659-

>mRNA_Ecto-sp13_S_contig1772.5365.1 ID=mRNA_Ecto-sp13_S_contig1772.5365.1|Name=mRNA_Ecto-sp13_S_contig1772.5365.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=816bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1772:5..7659- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGGGAGGGATGGCAGCCCTCACAGGGATCTTCATCCTCGGCCCTCG
CGCTGGAAGGTTCAACGAGGACGGCACCAGCAACACCATGCCCCAGCAGT
CCGCAGTGCTCCAGACGCTAGGGACGTTCATGCTCTGGTGGGGGTGGCTC
GGATTTAACGCGGGGTCGGTGTTCTCTTTCGTGGCCACACCGGCCGTGGC
TGCCAAGGTGATGGGGGTCACGGTCATCGGCGGTGCCTCCGGCGGTATCA
CCTCCCTCCTCGTCAACAAGCTGCAGTGCGGGTACTGGGACACCGGGAGC
GCCTTGAACGGCATCCTCACCGGCCTCGTGTCCATCACCGCCGGCTCGGG
GACCTACGAGCCCGAGGGCGCCTTCGTCGTGGGCGTCCTTGGCGGTGTGC
TGTACTTCTTCGCGTCCAGCTTGCTGCTCAGGAATCACTTGGACGACGTC
GTAAACGCCGCCCCCGTGCACCTATTCGGAGGCATGTGGGGCCTCGTTTC
GGCGGGTCTTTTCTCGTCCAAGTTCGCCTACGCGATGGCCTACTCCGAGG
ATAGGTCGGACAAGTGCGCCGGCATTCTGTATGGAGGCAGCGGCAGCTCT
CTCGCGGCGAACATTATCTTTTTGATGGCGGTAGTGGCCTGGGTGGGCTT
CCTGACCCTCTTGCTCTTCGTGGTGACGAAGCTGACCATAGGCATTCGCG
TGAGCAAGCAGCAGGAGCTGGCCGGCATGGACGACTCCAAGCACGGCGGA
CAAACGTTCCCCGAACTCCTACCCCGTCGGCGGACCATGGACAGGCCCGG
CTCGTCGTTTGGGTGA
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