mRNA_Ecto-sp13_S_contig1763.5330.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1763.5330.1
Unique NamemRNA_Ecto-sp13_S_contig1763.5330.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1763.5330.1 vs. uniprot
Match: D7G3Y8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Y8_ECTSI)

HSP 1 Score: 647 bits (1670), Expect = 2.590e-232
Identity = 357/398 (89.70%), Postives = 368/398 (92.46%), Query Frame = 1
Query:    1 MPSGSKNKQSASSRDEGTMFVEDSGSRVDATIGSNPVADGQGPATLPSESEQHIRDIVDKITSRNLNHGGGRKATGGAWLLEEDKVLRVIVVRDGEGVWKGKARELNSSMAPLHQKLALKAIARGESPVVYGRNAAQCLHRWKKVLEPGVMKGHWTPSEDAALVDAVQSAMALPESMKWSKVASYIPGRMGKQCRERWFNHLSPTLKKAPWTSQEEDVLFHAQKFFGPRWCEISRCVFPGRTANDIKNRFNSSARGRWLKSGNAEISMQTSNLFVQRLKTSANNLDDAKQSKRENAASHKGPRVQSSRTSSSVSSERPKKRAKHHPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXHTSGPGNTVTQSDTSIHWKKAFLRLWLMEKRFTLHGFLPGARR 1194
            MPSGSKNKQS SSRDEGTMFVED  SRVDATIGS+PVA+G+GPATLPSESEQHIRDIVDKI SRNLNHGGGRKATGGAWL EEDKVLRVIVVRDGEG WKGKARELNSSMA LHQKL LKA ARGESPVVYGRNAAQCLHRWKKVLEPGVMKGHWTPSEDAALVDAVQS MALPESMKWS +ASYIPGRMGKQCRERWFNHLSPTLKKAPWTSQEEDVLFHAQKFFGPRWCEISRCVFPGRTANDIKNRFNSSARGRWLKSGNAE+SMQTSNLFVQRLK SA NLDDAKQSKR+NAA+HKGPRV+SSRTSSSVS             XXXXXXXXXXXXXXXXXXXXXXXXXXXX ++GPG TVTQS TSIHWKKAFLRLWLME+RFTLHGFLP ARR
Sbjct:    1 MPSGSKNKQSLSSRDEGTMFVEDLVSRVDATIGSSPVAEGRGPATLPSESEQHIRDIVDKIASRNLNHGGGRKATGGAWLHEEDKVLRVIVVRDGEGGWKGKARELNSSMAALHQKLTLKATARGESPVVYGRNAAQCLHRWKKVLEPGVMKGHWTPSEDAALVDAVQSVMALPESMKWSNIASYIPGRMGKQCRERWFNHLSPTLKKAPWTSQEEDVLFHAQKFFGPRWCEISRCVFPGRTANDIKNRFNSSARGRWLKSGNAEVSMQTSNLFVQRLKASAKNLDDAKQSKRKNAATHKGPRVRSSRTSSSVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSNGPGITVTQSGTSIHWKKAFLRLWLMEQRFTLHGFLPRARR 398          
BLAST of mRNA_Ecto-sp13_S_contig1763.5330.1 vs. uniprot
Match: A0A6H5LA90_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA90_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 8.990e-74
Identity = 129/219 (58.90%), Postives = 159/219 (72.60%), Query Frame = 1
Query:  130 ATLPSESEQHIRDIVDKITSRNLNHGGGRKATGGAWLLEEDKVLRVIVVRDGEGVWKGKARELNSSMAPLHQKLALKAIARGESPVV-YGRNAAQCLHRWKKVLEPGVMKGHWTPSEDAALVDAVQSAMALPESMKWSKVASYIPGRMGKQCRERWFNHLSPTLKKAPWTSQEEDVLFHAQKFFGPRWCEISRCVFPGRTANDIKNRFNSSARGRWLKS 783
            A+L +E++  I+ +VD+I SRN N+GGGR+A GG W  EED  LR IV RDGEG WK KA ELN  MA  ++ +A  A A G+  V  YGR AAQCLHRWKKVL+PG+ K HWTP ED  +   V SA A+  ++KWS VA  +PGR+GKQCRERWFNHL PT+KK  WT  E++VLF+AQ FFG RWCEIS+ + PGRT N +KNR+NSSAR +W  S
Sbjct:  197 ASLRTEAD--IQGVVDEIKSRNPNNGGGRQAKGGRWTAEEDNTLRNIVSRDGEGKWKEKAEELNYVMASHYEAMAAVAAAEGDHAVQQYGRAAAQCLHRWKKVLQPGLNKRHWTPEEDEIVRGTVLSAQAIG-AVKWSLVAMLLPGRLGKQCRERWFNHLDPTVKKTEWTPHEDEVLFNAQAFFGTRWCEISKFL-PGRTENAVKNRYNSSARQKWFSS 411          
BLAST of mRNA_Ecto-sp13_S_contig1763.5330.1 vs. uniprot
Match: D8LKF8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF8_ECTSI)

HSP 1 Score: 259 bits (661), Expect = 2.970e-73
Identity = 128/219 (58.45%), Postives = 160/219 (73.06%), Query Frame = 1
Query:  130 ATLPSESEQHIRDIVDKITSRNLNHGGGRKATGGAWLLEEDKVLRVIVVRDGEGVWKGKARELNSSMAPLHQKLALKAIARGESPVV-YGRNAAQCLHRWKKVLEPGVMKGHWTPSEDAALVDAVQSAMALPESMKWSKVASYIPGRMGKQCRERWFNHLSPTLKKAPWTSQEEDVLFHAQKFFGPRWCEISRCVFPGRTANDIKNRFNSSARGRWLKS 783
            A+L +E++  I+ +VD+I  RN N+GGGR+A GG W  EED  LR IV RDGEG WK K+ ELN  MA  ++ +A  A A+G+  V  YGR AAQCLHRWKKVL+PG+ K HWTP ED  +  AV SA A+  ++KWS VA  +PGR+GKQCRERWFNHL PT+KK  WT  E++VLF+AQ FFG RWCEIS+ + PGRT N +KNR+NSSAR +W  S
Sbjct:  197 ASLRTEAD--IQGVVDEIKKRNPNNGGGRQAKGGRWTAEEDDTLRSIVSRDGEGKWKEKSEELNYVMASHYEAMAAVATAKGDHAVQEYGRVAAQCLHRWKKVLQPGLNKRHWTPEEDEIVRGAVLSAQAIG-AVKWSLVAVLLPGRLGKQCRERWFNHLDPTVKKTEWTPHEDEVLFNAQAFFGTRWCEISKFL-PGRTENAVKNRYNSSARQKWFSS 411          
BLAST of mRNA_Ecto-sp13_S_contig1763.5330.1 vs. uniprot
Match: D7FRA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRA0_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 9.870e-47
Identity = 93/226 (41.15%), Postives = 127/226 (56.19%), Query Frame = 1
Query:  145 ESEQHIRDIVDKITSRNLNHGGGRKATGGAWLLEEDKVLRVIVVRDGEGVWKGKARELNSSMAPLHQKLALKAIARGESPVVYGRNAAQCLHRWKKVLEPGVMKGHWTPSEDAALVDAVQSAMALPESMKWSKVASYIPGRMGKQCRERWFNHLSPTLKKAPWTSQEEDVLFHAQKFFGPRWCEISRCVFPGRTANDIKNRFNSSARGRWLKSGNAEISMQTSNLF 822
            ESE+ +  +V+K  +        +   GG W  EED  LR IV   G   W+  A +L +                        R+  QCLHRW KVL PG+ KG WT  ED+ + + V+ + A  + +KWS VAS +PGR+GKQCRERWFNHL P++KK  W+ +E+ ++F AQ + G RWCEI++ + PGRT N +KNRFNSSAR +WL       S  T +L 
Sbjct:   67 ESEEWLTSLVEKSKAAGAKGARSKGPKGGKWTKEEDTRLREIVEHHGARNWRMVAEQLGTL-----------------------RSDVQCLHRWNKVLRPGLHKGPWTEEEDSIVRECVEHSGA--QKVKWSVVASRLPGRIGKQCRERWFNHLDPSIKKGEWSPEEDRIVFGAQAYMGNRWCEIAK-LLPGRTENAVKNRFNSSARKKWLDQNPGGASQLTPDLL 266          
BLAST of mRNA_Ecto-sp13_S_contig1763.5330.1 vs. uniprot
Match: A0A7S1GEG8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GEG8_9STRA)

HSP 1 Score: 163 bits (412), Expect = 8.800e-45
Identity = 83/188 (44.15%), Postives = 106/188 (56.38%), Query Frame = 1
Query:  217 KATGGAWLLEEDKVLRVIVVRDGEGVWKGKARELNSSMAPLHQKLALKAIARGESPVVYGRNAAQCLHRWKKVLEPGVMKGHWTPSEDAALVDAVQSAMALPESMKWSKVASYIPGRMGKQCRERWFNHLSPTLKKAPWTSQEEDVLFHAQKFFGPRWCEISRCVFPGRTANDIKNRFNSSARGRWLK 780
            + +GG W   ED  LRV V   G   WK  A  L                        +GR   QCLHRW KVL+PG++KG W   ED  + D V         ++WS +AS +PGR+GKQCRERWFNHL P +KK  W  +E+ ++F AQ+  G +WCEI+R + PGRT N +KNR+NSSAR RW K
Sbjct:    8 RKSGGNWTAAEDAELRVAVEAHGGRNWKRIAETLG-----------------------HGRTDVQCLHRWNKVLKPGLVKGPWLKEEDDVVRDMVMKYGV--GQVRWSVIASKLPGRIGKQCRERWFNHLDPAIKKGGWMEEEDLLIFQAQREVGNKWCEIAR-MLPGRTENAVKNRWNSSARRRWFK 169          
BLAST of mRNA_Ecto-sp13_S_contig1763.5330.1 vs. uniprot
Match: A0A7S2BQG7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BQG7_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.890e-44
Identity = 82/185 (44.32%), Postives = 105/185 (56.76%), Query Frame = 1
Query:  226 GGAWLLEEDKVLRVIVVRDGEGVWKGKARELNSSMAPLHQKLALKAIARGESPVVYGRNAAQCLHRWKKVLEPGVMKGHWTPSEDAALVDAVQSAMALPESMKWSKVASYIPGRMGKQCRERWFNHLSPTLKKAPWTSQEEDVLFHAQKFFGPRWCEISRCVFPGRTANDIKNRFNSSARGRWLK 780
            GG W  EED  LRVIV + G   W+  A  L  +                       R   QCLHRW KVL PG+ KG WT  ED  + D V   M     +KWS +A+ + GR+GKQCRERWFNHL P + K  WT +E+ ++F AQ  FG RW +I++ + PGRT N +KNR+NSSAR +WL+
Sbjct:    6 GGKWTKEEDASLRVIVEQHGAKNWRKVAELLGDT-----------------------RTDVQCLHRWNKVLRPGLHKGPWTEEEDGIVRDMV--LMYGAGKVKWSAIAAKLHGRIGKQCRERWFNHLDPNINKGEWTPEEDRIVFEAQNQFGNRWSDIAK-LLPGRTENSVKNRWNSSARKKWLR 164          
BLAST of mRNA_Ecto-sp13_S_contig1763.5330.1 vs. uniprot
Match: A0A835YLN0_9STRA (Homeodomain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLN0_9STRA)

HSP 1 Score: 164 bits (414), Expect = 5.520e-44
Identity = 83/186 (44.62%), Postives = 111/186 (59.68%), Query Frame = 1
Query:  235 WLLEEDKVLRVIVVRDGEGVWKGKARELNSSMAPLHQKLALKAIARGESPVVYGRNAAQCLHRWKKVLEPGVMKGHWTPSEDAALVDAVQSAMALPESMKWSKVASYIPGRMGKQCRERWFNHLSPTLKKAPWTSQEEDVLFHAQKFFGPRWCEISRCVFPGRTANDIKNRFNSSARGRWLKSGNA 792
            W  EED  LR +V + G   WK  A EL             +A    + P    R   QCL+RWKK L PG+ KG WT +ED  + ++V+        +KWS +A+ +PGR+GKQCRERWFNHL P LK++ WT +E+ V+F AQ   G RWCEI++ + PGRT N +KNRFNSSA+ +W+    A
Sbjct:   36 WTSEEDARLRAVVDKHGSRNWKLVADEL------------AQAQPHAQPP----RTDVQCLNRWKKTLRPGLHKGAWTEAEDRVVRESVEECGIA--KVKWSTIAARLPGRIGKQCRERWFNHLDPALKRSTWTPEEDTVIFEAQARLGNRWCEIAK-LLPGRTENAVKNRFNSSAQKKWVSKNGA 202          
BLAST of mRNA_Ecto-sp13_S_contig1763.5330.1 vs. uniprot
Match: A0A836C844_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C844_9STRA)

HSP 1 Score: 159 bits (401), Expect = 8.110e-44
Identity = 80/179 (44.69%), Postives = 109/179 (60.89%), Query Frame = 1
Query:  229 GAWLLEEDKVLRVIVVRDGEGVWKGKARELNSSMAPLHQKLALKAIARGESPVVYGRNAAQCLHRWKKVLEPGVMKGHWTPSEDAALVDAVQSAMALPESMKWSKVASYIPGRMGKQCRERWFNHLSPTLKKAPWTSQEEDVLFHAQKFFGPRWCEISRCVFPGRTANDIKNRFNSSAR 765
            G W  +ED  LR  V R G   W+  A ++  +                       R   QCLHRW KVL PG+ KG WT +ED  + ++V+ A+ + + +KWS VA+ +PGR+GKQCRERWFNHL P +K++PWT +E+ V+F AQ   G RWCEI++ + PGRT N +KNRFNSSA+
Sbjct:    2 GTWAPDEDARLRDAVDRHGPRSWRAIAEDVGGA-----------------------RTDMQCLHRWNKVLRPGLHKGPWTETEDRVVRESVE-AVGIAK-VKWSAVAAKLPGRIGKQCRERWFNHLDPAIKRSPWTPEEDTVVFEAQLRLGNRWCEIAK-LLPGRTENAVKNRFNSSAQ 154          
BLAST of mRNA_Ecto-sp13_S_contig1763.5330.1 vs. uniprot
Match: A0A7S2R561_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R561_9STRA)

HSP 1 Score: 170 bits (430), Expect = 2.140e-43
Identity = 91/194 (46.91%), Postives = 112/194 (57.73%), Query Frame = 1
Query:  214 RKATGGAWLLEEDKVLRVIVVRDGEGVWKGKARELNSSMAPLHQKLALKAIARGESPVVYGRNAAQCLHRWKKVLEPGVMKGHWTPSEDAALVDAVQSAMALPESMKWSKVASYIPGRMGKQCRERWFNHLSPTLKKAPWTSQEEDVLFHAQKFFGPRWCEISRCVFPGRTANDIKNRFNSSARGRWLKSGNAE 795
            R   GG W  EED  LR IV + G   WK  A  L                     PV   R+  QCLHRW KVL PG+ KG WT  ED  + D V +      ++KWS +A+ +PGR+GKQCRERWFNHL P++KK  WT +E+ VLF AQ   G RWCEI++ + PGRT N +KNR+NSSAR RWL+    E
Sbjct:  142 RPPIGGKWSREEDDKLRAIVEQHGAKNWKKVAELLG--------------------PV---RSDVQCLHRWNKVLRPGLHKGPWTEDEDRIVSDMVLAHGV--GNIKWSVIAAELPGRIGKQCRERWFNHLDPSIKKGEWTPEEDKVLFEAQLVVGNRWCEIAK-LLPGRTENAVKNRWNSSARKRWLQENGYE 309          
BLAST of mRNA_Ecto-sp13_S_contig1763.5330.1 vs. uniprot
Match: A0A6U4HUA2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4HUA2_9STRA)

HSP 1 Score: 169 bits (428), Expect = 3.590e-43
Identity = 94/241 (39.00%), Postives = 131/241 (54.36%), Query Frame = 1
Query:   82 VDATIGSNPVADGQGPATL-PSESEQHIRDIVDKI--TSRNLNHGGGRKATGGAWLLEEDKVLRVIVVRDGEGVWKGKARELNSSMAPLHQKLALKAIARGESPVVYGRNAAQCLHRWKKVLEPGVMKGHWTPSEDAALVDAVQSAMALPESMKWSKVASYIPGRMGKQCRERWFNHLSPTLKKAPWTSQEEDVLFHAQKFFGPRWCEISRCVFPGRTANDIKNRFNSSARGRWLKSGNAE 795
             DA     P  D Q PA +  ++ ++ I  +  ++  T + +     + + GG W  EED  L+ IV   G   WK  A  L  +                       R+  QCLHRW KVL+PG+ KG W  +ED  + D V         +KWS +A+ +PGR+GKQCRERWFNHL P++ KAPWT +E+ ++F AQ+ FG RWCEI++ + PGRT N +KNR+NSSAR +W     AE
Sbjct:  191 ADAVFQLQP-GDPQRPAGMNDTQWQKRILQLRSQLANTKKGVRLKPRKPSQGGKWSKEEDARLKGIVQEHGAKNWKKIAELLGHT-----------------------RSDVQCLHRWNKVLKPGLHKGPWQAAEDEVVRDMVIRHGV--GKVKWSDIAALLPGRIGKQCRERWFNHLDPSISKAPWTEEEDTIIFEAQQIFGNRWCEIAK-LLPGRTENMVKNRWNSSARKKWFADRKAE 404          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1763.5330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3Y8_ECTSI2.590e-23289.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LA90_9PHAE8.990e-7458.90MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LKF8_ECTSI2.970e-7358.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRA0_ECTSI9.870e-4741.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1GEG8_9STRA8.800e-4544.15Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S2BQG7_9STRA1.890e-4444.32Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A835YLN0_9STRA5.520e-4444.62Homeodomain-like protein n=1 Tax=Tribonema minus T... [more]
A0A836C844_9STRA8.110e-4444.69Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A7S2R561_9STRA2.140e-4346.91Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6U4HUA2_9STRA3.590e-4339.00Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1763contigEcto-sp13_S_contig1763:8292..12588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score647.9
Seed ortholog evalue3.1e-183
Seed eggNOG ortholog2880.D7G3Y8
Preferred nameMYBL2
Model size1197
KEGG koko:K09420,ko:K09422
KEGG Pathwayko04151,ko05166,map04151,map05166
Hectar predicted targeting categoryother localisation
Exons9
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-19_000770.1
Cds size1197
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1763.5330.1prot_Ecto-sp13_S_contig1763.5330.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1763 8292..12588 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462916.4523504-CDS-Ecto-sp13_S_contig1763:8291..83401681462916.4523504-CDS-Ecto-sp13_S_contig1763:8291..8340Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1763 8292..8340 +
1681462916.477414-CDS-Ecto-sp13_S_contig1763:8757..89491681462916.477414-CDS-Ecto-sp13_S_contig1763:8757..8949Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1763 8758..8949 +
1681462916.4864233-CDS-Ecto-sp13_S_contig1763:9219..94001681462916.4864233-CDS-Ecto-sp13_S_contig1763:9219..9400Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1763 9220..9400 +
1681462916.4996116-CDS-Ecto-sp13_S_contig1763:10115..102181681462916.4996116-CDS-Ecto-sp13_S_contig1763:10115..10218Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1763 10116..10218 +
1681462916.514858-CDS-Ecto-sp13_S_contig1763:10454..105981681462916.514858-CDS-Ecto-sp13_S_contig1763:10454..10598Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1763 10455..10598 +
1681462916.5273614-CDS-Ecto-sp13_S_contig1763:10984..112151681462916.5273614-CDS-Ecto-sp13_S_contig1763:10984..11215Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1763 10985..11215 +
1681462916.5380893-CDS-Ecto-sp13_S_contig1763:11470..116431681462916.5380893-CDS-Ecto-sp13_S_contig1763:11470..11643Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1763 11471..11643 +
1681462916.5485127-CDS-Ecto-sp13_S_contig1763:12198..122821681462916.5485127-CDS-Ecto-sp13_S_contig1763:12198..12282Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1763 12199..12282 +
1681462916.557483-CDS-Ecto-sp13_S_contig1763:12548..125881681462916.557483-CDS-Ecto-sp13_S_contig1763:12548..12588Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1763 12549..12588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1763.5330.1

>prot_Ecto-sp13_S_contig1763.5330.1 ID=prot_Ecto-sp13_S_contig1763.5330.1|Name=mRNA_Ecto-sp13_S_contig1763.5330.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=399bp
MPSGSKNKQSASSRDEGTMFVEDSGSRVDATIGSNPVADGQGPATLPSES
EQHIRDIVDKITSRNLNHGGGRKATGGAWLLEEDKVLRVIVVRDGEGVWK
GKARELNSSMAPLHQKLALKAIARGESPVVYGRNAAQCLHRWKKVLEPGV
MKGHWTPSEDAALVDAVQSAMALPESMKWSKVASYIPGRMGKQCRERWFN
HLSPTLKKAPWTSQEEDVLFHAQKFFGPRWCEISRCVFPGRTANDIKNRF
NSSARGRWLKSGNAEISMQTSNLFVQRLKTSANNLDDAKQSKRENAASHK
GPRVQSSRTSSSVSSERPKKRAKHHPMSAKAARVRSRATSSTVSFERQKK
RRKHNHTSGPGNTVTQSDTSIHWKKAFLRLWLMEKRFTLHGFLPGARR*
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mRNA from alignment at Ecto-sp13_S_contig1763:8292..12588+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1763.5330.1 ID=mRNA_Ecto-sp13_S_contig1763.5330.1|Name=mRNA_Ecto-sp13_S_contig1763.5330.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4297bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1763:8292..12588+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTTCAGGATCTAAAAACAAGCAATCGGCCAGCAGCCGGGACGAAGG TGCAATCCTCAAGCACACGAAAGATCGGTGAAAGAAAGCCGCACAGGCCG CTGTGCCGAAGTGTCTTGAGTCGAGTAACTCTAAAGTACTGCAATGCACG GCCGTTATAATCACTGGGTGGTGGAAACGTCGAAGGTTGGAGCTACGCGC CTACTGTAGAAGTACAAATTCATCCAATGAAAACATCTCGGAGAATAGGG CACACTATGATAGGCCGGCAACTGATACTGACGGCAAGATAGAGGAGAAC GTTAAATGAGAGAGCTCTGTGAGCGAGTGCGCCACAGTTCACACCCCACC CTGAAGACTGATTTTTGGCCGTGCACTTAGTTAGGTCTTAACCTTTTGTC CAATCCCCTTGCCCTTCGATGCTGCCACCGTTACAAATGTGCGACGTTCT CGCCCCAACAACTTAGGTACGATGTTTGTGGAGGATTCCGGTTCGCGCGT TGATGCCACCATTGGTTCGAATCCAGTCGCCGATGGACAAGGCCCGGCCA CTCTCCCGTCGGAAAGTGAGCAGCACATCCGGGACATCGTGGACAAGATT ACGTCCCGCAACCTCAACCACGGTGGTGGCAGGAAAGCGACTGGAGGGGC CTGGCTACGTGAGAGCAAATGTACTTGTAGTGTAGCTGCATTGCTGTAGA ATCCGGTCTTCTTGTAAACAAAAGCACAAACAAAAACATAACCGTAAAAA CACACGTCACGAGGAGGAGCCGAGAAGAGCGAAAGCAGCTCCAGCGATAC CGGTCACCGCCCTCCTCGGTTTTTGCTGGTGTAATTGTCCTGCCCTTTCG TTCACCGACCGACCCTCTAATTTTTTGTGGTTACAATATCGCTTGCATCA CCCAAAAACTTGCCAACGTCTATTGCAGTTGAGGAGGACAAGGTGTTGCG AGTAATCGTGGTCCGAGACGGCGAGGGTGTGTGGAAAGGAAAGGCCCGTG AGCTCAACTCCTCGATGGCTCCCCTGCACCAGAAGCTTGCACTCAAGGCG ATCGCGCGGGGCGAGTCTCCCGTGGTGTACGGCAGAAACGCGGCGCAATG TTTGCACAGGTAGGTATCTCTTGAGCGTGATAGAGACGAAGGCCAAGCTG ATCGGACTTTTCCTCTATGTGTTGTCAAAACTCCCTGCTAAAGTAGATGT ACTATGCTTTCTCTTGGTGAAGACGTTGACTGTATCTTGCAGCTCCAACG GCTGTACCTTTACCTCGGAGAGGTAGGGCAGGCGTGCACCTTTGAGGTGT CTTCAGTGTGACCCCGGATCGGACCTCTTCGACTGCTGGGGCCAAGGTCA TGAGGTAGATCAAATAGACACACGATTATATCAAGAAGAAATCAATGGTG CTGCTGCAGCAAATTCTGTAGAGATGAAGTTTCAAATCTAACTCCCCGTT TACGTGAAGCTTCTTTCCTTTTCTTGACTTATTGTATTGCTTCGCCGTTC GTGTGGGTATGCCCTCGTCCGCTGATCTTATTCGTTCGACTGGTTTCCTC TTGTGATATCCGGGGGGAGGGAAGGTCTTAGCCATGGCAGGAAACAACAA GAGAAGTTCACGATTTTTCCTCCCGGCATGACACGTTGATGCTCTCCATC TGCAGAACGCATTGCTTCTCGAGACTTCGCGTCATCAAGGGTCGTCTTGT GACTTTGTTGACCAAACTTTTCCTGGGGTAATATGAACGTATTGCGTATA CGTGCGGATAGCGCCAGTTTCTGAAACTCTCCAGAATGTGTCTCCGGAAA ATGAACGCATATCGACATCGAAAGGTGGAAGAAAGTCCTGGAGCCTGGCG TGATGAAAGGCCACTGGACGCCATCCGAGGACGCTGCCTTAGTTGACGCG GTACAATCCGCGATGGCACTTCCAGAGGTAGGTGTGATCCAATGCCTTTT GCCCTTACAACCCGCCCAATCCATGTCACGTCTTTCATAAAACCATGGCA CGTGCGATATACTTCTGTGATTCGACCCACACCATCGGGCGTATAAGATT CCCAATGATGAAGATGAAAAACAGAAGTCAATTTATTGTGTCGTCGTGCT CTCTCATGTCTCCCACGTCTCTCTTTCGATCTTGTATAATACCGGGCACA CACGCCACACTAGAGCATGAAGTGGAGTAAAGTTGCCTCGTACATTCCTG GGAGGATGGGCAAGCAGTGCCGTGAACGCTGGTTCAACCATCTTAGCCCG ACACTGAAGAAGGCTCCATGGACAAGCCAGGAGGAAGACGTACTATTTCA CGCGCAGGTCAGAAAGTTGGAATGAATAGCGTTCTTAGATGGCGATGGGC TTCGTTTCAATGAAACATATAGTGGGGTGTTGCGTGCTACCTAGTTCATA TTACGTATTGCAGTGATCCTGACAAACGCAAACTCAGCGTTGTTTTTTAT TCTTTTGTACTTTCTCCGGTACGCAAACACTGATCTTAGACTTTGCTGAG GTGAATTGATGAAGATATATCGTGCAATAATTCGTTCGGGAAAAGCTTGT ATGTCACGGGTACTTCAGGAGAATAGATTCCGACGCGCTCAATCGCGGCC CTTATCTCGAGTATCAACATGAAAAAGGCGCTCAAGCTCGCTTTCCACCG TCATACCACTGTTATTATTTCTATCGCTTTCCCTATGTCACAGAAATTCT TCGGCCCTCGCTGGTGTGAGATCTCCCGTTGCGTCTTTCCTGGAAGAACG GCGAACGACATCAAGAACCGCTTCAATTCCAGTGCGCGAGGCAGGTGGCT CAAGTCAGGAAATGCGGAAATCAGCATGCAGACGTCGAACCTCTTTGTCC AGAGGCTCAAGACTTCGGCGAATAATCTTGACGATGCCAAGCAGTCGAAG AGGGAAAATGCCGCTTCGCACAAGGTGAAAAGTTTGTTCCTGCCAAGAAT GAGTATTATATATAGTTGTATCATTGCCTGCGTTCAGGAGAAGGGTCTAC TGCAGAGCCCTCGCGCCACAGGACACCGGCCATGGAAAATAAAACTACTG TAACGCCTCGACAATAGCAACACCGAGAAGATCAATCGCGTGATTCATTC GAAACGCTGACGGCTGGCTCCCCTGGTCACCTTCGATGAGAGTTTCTTTT TTTTATTGGGTTTGGCTGCGTCGACGAAGGGACCTCGGGTGCAGTCATCT CGGACTTCGTCTAGCGTCTCCTCCGAGAGGCCGAAGAAGCGAGCGAAACA TCATCCCATGTCGGCGAAGGCAGCTCGGGTGCGGTCACGTGCGACGTCCT CTACCGTCTCCTTCGAAAGGCAGAAGAAGCGGAGGAAGCACAACCACACC AGGTGAGTATGTGGGTGGGATCTCGACATGACCACGCCCTGCCAAAACTC TCAACATCTCGTTGCCTGTGGATAGTAAGTGACAATCGTTCGGCCATGGT TCGCCTGCAGTAGCATCATACACTACAACCGTTCGGGCATTTAGGAAATA AAATCTCCGATGCCCCTGCGCTGGATGATCAAGCTGCAAGTCCCGTGTGC GTGGGAGAAGCAGTATAATACTACAAGACCCCCGGGTTGTAGGTCGCAAC TTCAGTAGTTACAAGGCGTGGACCTGAGGCTTGTTTTCTGCCTGTTGTCC GTACATACAACCACATCTCTGACCACATGTTGACCCTATCCGAGATGATT GAATACGTAGCGCAAACGTACTTGCCACGTCTCAGTGCATGCGTATTTGT TGGACGAGGAATTGACCGTCCGTCCCACAGCGAGGGGAATTTAGTGCAGA CCATGGATCGGTTTCCTTAGATTACTGAAACAATCCGCTCTCCTCGTCGA CCCGCCCTACCGTCTTTCACTCCCTTCCTTTCCAAAACTGACAATGTCTA CGTGTAGCGGCCCTGGAAATACTGTGACCCAGAGTGACACTAGCATCCAC TGGAAGAAGGCTTTCCTGCGGCTATGGCTCATGGAAAAACGGTGAGGCCC CACCATTGCGCCACACAGCTGGCCAATACGATATTCTACTATCAATACAT ACCGAAATGGAAACGAAAGCTCTAGTTTTCCTTGCTCCTGTGCTCTTATG ACACGCGGGCATAGAGCCGTTGTGTGTCTCAGGTGCATGGGTTTCTGTCG TTTGGTTTCTGAAATCAGCATATGGCTGGGGGTCGTTGACCCTGACATAG AATTGACCGTTCTTACACATAACCCGAGTGAGTTTTTACGGCGATATTGC CGTCCAGGTTCACACTCCACGGGTTTCTGCCAGGAGCGAGGCGTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1763:8292..12588+

>mRNA_Ecto-sp13_S_contig1763.5330.1 ID=mRNA_Ecto-sp13_S_contig1763.5330.1|Name=mRNA_Ecto-sp13_S_contig1763.5330.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1197bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1763:8292..12588+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTTCAGGATCTAAAAACAAGCAATCGGCCAGCAGCCGGGACGAAGG
TACGATGTTTGTGGAGGATTCCGGTTCGCGCGTTGATGCCACCATTGGTT
CGAATCCAGTCGCCGATGGACAAGGCCCGGCCACTCTCCCGTCGGAAAGT
GAGCAGCACATCCGGGACATCGTGGACAAGATTACGTCCCGCAACCTCAA
CCACGGTGGTGGCAGGAAAGCGACTGGAGGGGCCTGGCTACTTGAGGAGG
ACAAGGTGTTGCGAGTAATCGTGGTCCGAGACGGCGAGGGTGTGTGGAAA
GGAAAGGCCCGTGAGCTCAACTCCTCGATGGCTCCCCTGCACCAGAAGCT
TGCACTCAAGGCGATCGCGCGGGGCGAGTCTCCCGTGGTGTACGGCAGAA
ACGCGGCGCAATGTTTGCACAGGTGGAAGAAAGTCCTGGAGCCTGGCGTG
ATGAAAGGCCACTGGACGCCATCCGAGGACGCTGCCTTAGTTGACGCGGT
ACAATCCGCGATGGCACTTCCAGAGAGCATGAAGTGGAGTAAAGTTGCCT
CGTACATTCCTGGGAGGATGGGCAAGCAGTGCCGTGAACGCTGGTTCAAC
CATCTTAGCCCGACACTGAAGAAGGCTCCATGGACAAGCCAGGAGGAAGA
CGTACTATTTCACGCGCAGAAATTCTTCGGCCCTCGCTGGTGTGAGATCT
CCCGTTGCGTCTTTCCTGGAAGAACGGCGAACGACATCAAGAACCGCTTC
AATTCCAGTGCGCGAGGCAGGTGGCTCAAGTCAGGAAATGCGGAAATCAG
CATGCAGACGTCGAACCTCTTTGTCCAGAGGCTCAAGACTTCGGCGAATA
ATCTTGACGATGCCAAGCAGTCGAAGAGGGAAAATGCCGCTTCGCACAAG
GGACCTCGGGTGCAGTCATCTCGGACTTCGTCTAGCGTCTCCTCCGAGAG
GCCGAAGAAGCGAGCGAAACATCATCCCATGTCGGCGAAGGCAGCTCGGG
TGCGGTCACGTGCGACGTCCTCTACCGTCTCCTTCGAAAGGCAGAAGAAG
CGGAGGAAGCACAACCACACCAGCGGCCCTGGAAATACTGTGACCCAGAG
TGACACTAGCATCCACTGGAAGAAGGCTTTCCTGCGGCTATGGCTCATGG
AAAAACGGTTCACACTCCACGGGTTTCTGCCAGGAGCGAGGCGTTAG
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