mRNA_Ecto-sp13_S_contig17584.5303.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17584.5303.1
Unique NamemRNA_Ecto-sp13_S_contig17584.5303.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17584.5303.1 vs. uniprot
Match: D7G099_ECTSI (Phosphodiesterase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G099_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 9.110e-29
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 QVLLEEGGANNIFSGLTRAQFRDVRQTIVQAILGTDMSGHMQHCADVFQCVQKAKK 168
            QVLLEEGGANNIFSGLTRAQFRDVRQTIVQAILGTDMSGHMQHCADVFQCVQKAKK
Sbjct:  822 QVLLEEGGANNIFSGLTRAQFRDVRQTIVQAILGTDMSGHMQHCADVFQCVQKAKK 877
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BLAST of mRNA_Ecto-sp13_S_contig17584.5303.1 vs. uniprot
Match: D7G095_ECTSI (Phosphodiesterase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G095_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.030e-24
Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 QVLLEEGGANNIFSGLTRAQFRDVRQTIVQAILGTDMSGHMQHCADVFQCVQKAKK 168
            QVLLEEGGANNIFSGLTR QFRDVRQTIVQAILGTDMSGHMQHCADVFQ   KAK+
Sbjct:  536 QVLLEEGGANNIFSGLTRIQFRDVRQTIVQAILGTDMSGHMQHCADVFQFALKAKR 591
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BLAST of mRNA_Ecto-sp13_S_contig17584.5303.1 vs. uniprot
Match: A0A6H5KY22_9PHAE (Phosphodiesterase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY22_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 2.620e-24
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 QVLLEEGGANNIFSGLTRAQFRDVRQTIVQAILGTDMSGHMQHCADVFQCVQKAKK 168
            QVLLEEGGANNIFSGLTR QFRDVRQTIVQAILGTDMSGHMQHCADVFQ   KA++
Sbjct:  793 QVLLEEGGANNIFSGLTRIQFRDVRQTIVQAILGTDMSGHMQHCADVFQFALKARR 848
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BLAST of mRNA_Ecto-sp13_S_contig17584.5303.1 vs. uniprot
Match: A0A835YJJ2_9STRA (Phosphodiesterase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJJ2_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.340e-10
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 QVLLEE-GGANNIFSGLTRAQFRDVRQTIVQAILGTDMSGHMQHCADVFQCVQKAK 165
            ++LLEE GGANNI S L+RAQF + R+ IV+AIL TDMS H+ HCA   + + +AK
Sbjct: 1280 KILLEEAGGANNILSRLSRAQFTESRKVIVRAILSTDMSQHLDHCARAARLLSRAK 1335
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17584.5303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G099_ECTSI9.110e-29100.00Phosphodiesterase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
D7G095_ECTSI1.030e-2491.07Phosphodiesterase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KY22_9PHAE2.620e-2489.29Phosphodiesterase n=1 Tax=Ectocarpus sp. CCAP 1310... [more]
A0A835YJJ2_9STRA2.340e-1057.14Phosphodiesterase n=1 Tax=Tribonema minus TaxID=30... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17584contigEcto-sp13_S_contig17584:3385..3552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score115.5
Seed ortholog evalue7.8e-24
Seed eggNOG ortholog2880.D7G099
Model size168
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.3',5'-cyclic-nucleotide phosphodiesterase activity
EggNOG OGsKOG3689@1,KOG3689@2759
Cds size168
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462914.3268604-CDS-Ecto-sp13_S_contig17584:3384..35521681462914.3268604-CDS-Ecto-sp13_S_contig17584:3384..3552Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17584 3385..3552 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17584.5303.1prot_Ecto-sp13_S_contig17584.5303.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17584 3385..3552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17584.5303.1

>prot_Ecto-sp13_S_contig17584.5303.1 ID=prot_Ecto-sp13_S_contig17584.5303.1|Name=mRNA_Ecto-sp13_S_contig17584.5303.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp
QVLLEEGGANNIFSGLTRAQFRDVRQTIVQAILGTDMSGHMQHCADVFQC
VQKAKK
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mRNA from alignment at Ecto-sp13_S_contig17584:3385..3552-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17584.5303.1 ID=mRNA_Ecto-sp13_S_contig17584.5303.1|Name=mRNA_Ecto-sp13_S_contig17584.5303.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17584:3385..3552- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGCTGCTGGAGGAAGGCGGGGCGAACAACATCTTCTCGGGGCTGAC
GCGCGCCCAGTTTCGAGATGTACGCCAGACCATCGTGCAGGCCATCCTCG
GCACGGACATGTCCGGCCACATGCAGCACTGCGCGGATGTCTTCCAGTGC
GTGCAGAAGGCGAAGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17584:3385..3552-

>mRNA_Ecto-sp13_S_contig17584.5303.1 ID=mRNA_Ecto-sp13_S_contig17584.5303.1|Name=mRNA_Ecto-sp13_S_contig17584.5303.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17584:3385..3552- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGCTGCTGGAGGAAGGCGGGGCGAACAACATCTTCTCGGGGCTGAC
GCGCGCCCAGTTTCGAGATGTACGCCAGACCATCGTGCAGGCCATCCTCG
GCACGGACATGTCCGGCCACATGCAGCACTGCGCGGATGTCTTCCAGTGC
GTGCAGAAGGCGAAGAAG
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