mRNA_Ecto-sp13_S_contig1758.5299.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1758.5299.1
Unique NamemRNA_Ecto-sp13_S_contig1758.5299.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1758.5299.1 vs. uniprot
Match: D7G5P3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5P3_ECTSI)

HSP 1 Score: 836 bits (2160), Expect = 1.120e-294
Identity = 468/551 (84.94%), Postives = 487/551 (88.38%), Query Frame = 1 
Query:    1 RARETAELERSELRRRHDVEMSAKQSRIERLKLEVRKLEAERDGLKQAAETQVGLFKDGYAELKTCLEEMKAHGQSPPPATSRSLADSCSEE-ARPGGDGRETIKSAEERERWMLTMLATEEGLNRQQVRMLQDLLLEAVSAATPTVVMPAAVTRAVDSIRQGLGLPPLVHSPERATPTLRRMPFSSSSRYPSAAAA-TVAAAESMHSSSDLETAGCGPHRGSDVERHSGQGPRVESPTQYGPSERGQK---YHHQIHGDRRPSGQTATPDATSLSSTLEGTTNDKRLAVDAMGGTSSQGKVTGRDIRPGDGNTDDSRSCTGSEGSGTLWVRVAPTDESSSVEEDLDSPSSQASCRYRGVGPGASRWRGRDEILERYLGGGRGGVPNEKPEPEGHPEGNQPSHELLSSPRAWSAAGPCNGRRSRWQTPERGGNRNRENTDRPHSSLGEETLIRNVRDDSRAGAERGNRRRRVLGAELVASGGAMSVGNFAGMRNTNASDTRPCVQDVVENDGSPSGDGKCTRITSSEGWRDRDGLPGGAQKASSNEFDGHR 1638
            RARETAELERSELRRRHDVEM+AKQSRIERLKLEVR+LEAERDGLKQAAETQVGLFKDGYAELKTCLEEMKAHGQSPPP TSRS ADSCSEE ARPGGDGR TIKSAE RERWM TMLATEEGLN Q VRMLQ LLLEAVSAATPTVVMPAAVT+AVDSIRQGLGLPPLVHSPERA P LR MPFSSSSRYP+AAAA TVA AESMHSSSDLETAGCGPHR S VERH  QGPRVESPTQYGPSERGQ+   YHHQIHGDRRP G TATPDATS+SST E TT DKRL VDA GGTSSQGKV GRDIRP D + DD+ SCTGSEGSGTLWVRVAPTDESSSVEEDL+SPSSQAS R+ G+GPGASRWRGRD+ILERYLGGGRGGVPNE PEPEG PEGNQPSHE  SSPRA SAAGP NGRRSRWQTPERG  RN + TDRPHS  GEETLIRN+ D+S AGAERGNRRRR+LGA+L ASGGAMSVG+  GMR TN SDTRPCV DVVE+DGS SGDGKCTR  SSEGW  RD LP G QKA SNEFDGHR
Sbjct:  478 RARETAELERSELRRRHDVEMTAKQSRIERLKLEVRRLEAERDGLKQAAETQVGLFKDGYAELKTCLEEMKAHGQSPPPDTSRSPADSCSEEQARPGGDGRGTIKSAEGRERWMQTMLATEEGLNCQ-VRMLQGLLLEAVSAATPTVVMPAAVTQAVDSIRQGLGLPPLVHSPERAAPALRGMPFSSSSRYPTAAAAATVAVAESMHSSSDLETAGCGPHRESGVERHFRQGPRVESPTQYGPSERGQQSRHYHHQIHGDRRPPGLTATPDATSVSSTAESTTTDKRLEVDATGGTSSQGKVAGRDIRPNDVDDDDNSSCTGSEGSGTLWVRVAPTDESSSVEEDLNSPSSQASYRHHGIGPGASRWRGRDDILERYLGGGRGGVPNENPEPEGQPEGNQPSHEWPSSPRARSAAGPGNGRRSRWQTPERGSIRNSD-TDRPHSGPGEETLIRNLPDESGAGAERGNRRRRMLGAKLAASGGAMSVGSLEGMRTTNPSDTRPCVLDVVEHDGSLSGDGKCTRNASSEGWGRRDKLPAGVQKAISNEFDGHR 1026
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BLAST of mRNA_Ecto-sp13_S_contig1758.5299.1 vs. uniprot
Match: A0A6H5KE49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE49_9PHAE)

HSP 1 Score: 825 bits (2132), Expect = 9.420e-291
Identity = 452/533 (84.80%), Postives = 472/533 (88.56%), Query Frame = 1 
Query:   58 EMSAKQSRIERLKLEVRKLEAERDGLKQAAETQVGLFKDGYAELKTCLEEMKAHGQSPPPATSRSLADSCSEEARPGGDGRETIKSAEERERWMLTMLATEEGLNRQQVRMLQDLLLEAVSAATPTVVMPAAVTRAVDSIRQGLGLPPLVHSPERATPTLRRMPFSSSSRYPSAAA---ATVAAAESMHSSSDLETAGCGPHRGSDVERHSGQGPRVESPTQYGPSERGQK---YHHQIHGDRRPSGQTATPDATSLSSTLEGTTNDKRLAVDAMGGTSSQGKVTGRDIRPGDGNTDDSRSCTGSEGSGTLWVRVAPTDESSSVEEDLDSPSSQASCRYRGVGPGASRWRGRDEILERYLGGGRGGVPNEKPEPEGHPEGNQPSHELLSSPRAWSAAGPCNGRRSRWQTPERGGNRNRENTDRPHSSLGEETLIRNVRDDSRAGAERGNRRRRVLGAELVASGGAMSVGNFAGMRNTNASDTRPCVQDVVENDGSPSGDGKCTRITSSEGWRDRDGLPGGAQKASSNEFDGHR 1638
            +MSAKQSRIERLKLEVRKLEAERDGLKQAAE QVGLFKDGYAELKTCLEEMKAHGQSPPPATSRSLADSCSEE  PGGDGRETIKSAE RE WM TMLATEEGLN Q VRMLQ LLLEAVSAATPTVVMPAAVT+AVDSIRQGLGLPPL+HSPERA   L  MPFSSSSRYP+AA    ATVA  ES H S DLETAGCGPHRGS VERH  QGPRVESPTQY PSERGQ+   YHHQIHGDRRPSGQTATP+ATSLSST EGTTNDKR  VDAMGGTSSQGKV G+DIRP DG+ DD  SCTGSEGSGTLWVRVAPTDESSSVEEDL+ PSSQAS R++GVGPGASRWRGRD+ILERY+GGGRGGVPNEKPEPEG PEGNQ SHEL SSPRAWSA GP NGRRSRWQTPERG NRN  +TDRPHS  GEETLIRNVRD+SRAGAERGNRRRR+LGAEL  SGGAMSVGN AGMRN NASD RPCV DV E++GSP+GDGKCTRI SSEGW  RDGLPGGA+KA SNEFDGHR
Sbjct:  475 QMSAKQSRIERLKLEVRKLEAERDGLKQAAEIQVGLFKDGYAELKTCLEEMKAHGQSPPPATSRSLADSCSEE--PGGDGRETIKSAEGRESWMQTMLATEEGLNCQ-VRMLQGLLLEAVSAATPTVVMPAAVTQAVDSIRQGLGLPPLIHSPERAARALHGMPFSSSSRYPAAAXXXXATVAVPESTHISRDLETAGCGPHRGSGVERHFLQGPRVESPTQYRPSERGQQPRDYHHQIHGDRRPSGQTATPNATSLSSTAEGTTNDKRHVVDAMGGTSSQGKVAGKDIRPDDGDDDDGSSCTGSEGSGTLWVRVAPTDESSSVEEDLNPPSSQASYRHQGVGPGASRWRGRDDILERYIGGGRGGVPNEKPEPEGQPEGNQSSHELPSSPRAWSAVGPGNGRRSRWQTPERGSNRNNSDTDRPHSGPGEETLIRNVRDESRAGAERGNRRRRMLGAELAVSGGAMSVGNEAGMRNANASDIRPCVLDVAEHEGSPNGDGKCTRIPSSEGWGGRDGLPGGAKKAISNEFDGHR 1004
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1758.5299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5P3_ECTSI1.120e-29484.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KE49_9PHAE9.420e-29184.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1758contigEcto-sp13_S_contig1758:104..2821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1641
Hectar predicted targeting categoryother localisation
Exons5
Cds size1641
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462914.0179439-CDS-Ecto-sp13_S_contig1758:103..1631681462914.0179439-CDS-Ecto-sp13_S_contig1758:103..163Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1758 104..163 +
1681462914.0264184-CDS-Ecto-sp13_S_contig1758:328..4091681462914.0264184-CDS-Ecto-sp13_S_contig1758:328..409Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1758 329..409 +
1681462914.0350356-CDS-Ecto-sp13_S_contig1758:887..10221681462914.0350356-CDS-Ecto-sp13_S_contig1758:887..1022Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1758 888..1022 +
1681462914.0444863-CDS-Ecto-sp13_S_contig1758:1259..13611681462914.0444863-CDS-Ecto-sp13_S_contig1758:1259..1361Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1758 1260..1361 +
1681462914.0550413-CDS-Ecto-sp13_S_contig1758:1558..28211681462914.0550413-CDS-Ecto-sp13_S_contig1758:1558..2821Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1758 1559..2821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1758.5299.1prot_Ecto-sp13_S_contig1758.5299.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1758 104..2821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1758.5299.1

>prot_Ecto-sp13_S_contig1758.5299.1 ID=prot_Ecto-sp13_S_contig1758.5299.1|Name=mRNA_Ecto-sp13_S_contig1758.5299.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=547bp
RARETAELERSELRRRHDVEMSAKQSRIERLKLEVRKLEAERDGLKQAAE
TQVGLFKDGYAELKTCLEEMKAHGQSPPPATSRSLADSCSEEARPGGDGR
ETIKSAEERERWMLTMLATEEGLNRQQVRMLQDLLLEAVSAATPTVVMPA
AVTRAVDSIRQGLGLPPLVHSPERATPTLRRMPFSSSSRYPSAAAATVAA
AESMHSSSDLETAGCGPHRGSDVERHSGQGPRVESPTQYGPSERGQKYHH
QIHGDRRPSGQTATPDATSLSSTLEGTTNDKRLAVDAMGGTSSQGKVTGR
DIRPGDGNTDDSRSCTGSEGSGTLWVRVAPTDESSSVEEDLDSPSSQASC
RYRGVGPGASRWRGRDEILERYLGGGRGGVPNEKPEPEGHPEGNQPSHEL
LSSPRAWSAAGPCNGRRSRWQTPERGGNRNRENTDRPHSSLGEETLIRNV
RDDSRAGAERGNRRRRVLGAELVASGGAMSVGNFAGMRNTNASDTRPCVQ
DVVENDGSPSGDGKCTRITSSEGWRDRDGLPGGAQKASSNEFDGHR*
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mRNA from alignment at Ecto-sp13_S_contig1758:104..2821+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1758.5299.1 ID=mRNA_Ecto-sp13_S_contig1758.5299.1|Name=mRNA_Ecto-sp13_S_contig1758.5299.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2718bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1758:104..2821+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGCGCGAGAGACGGCGGAGCTCGAGAGAAGCGAACTGCGCCGGAGGCA
CGACGTTGAGGTGGGTAAAACCAGCCTTGGATCGGTCGGTGTTCGGGTAA
GTGTTGTTCTTCGAGGAACAATCGCGTTGGTTTGTTGCTGCTGCTAGTAC
GGTCCGTCAAGGGTACTGTTATGGCTTCTAGATCACCCGGAGTTCCCCTC
GGCCTCATCCTTGCTGGTGCCATAGATGTCCGCGAAACAATCTCGGATCG
AGAGGCTCAAGCTCGAGGTACGCAAGCTGGAGGCAGAGAGGGACGGCCTG
AAACAGGTAATGGGTATACCGAGCATCTTTTTCTTGCGTCTAAGCAGTAT
AATGTGTACGGGAGCTCTGTTGACTCCGACGCCCCTCGCCCGTTGTACCA
TTCTGACTCGAGTGCACCGTTGACTACAACGGAGCACCCGGATGGGTATC
GTTTTTAGATATGCCATCAGTTTCGATTTTTGGTCTAAGAGTTGTGATAG
CATTCCACAAGACCAACACGGGTATCCCGAGCAATGTCTTCGGTGATACG
GTGAAATCCGACCGGATTTGTGATCTAAGCTTCCTGCGTCATCGTGCAAA
GTAGCAAGGTGAGGCTGGGGATGCGGATAATCCAGCGTGCACTTGCTTCT
CTGGCAAGAAGTGTGATGAAAGGTGACGTCTTATATACGGCAGAAAGTAC
CTGAGGATCCAGTCGCCGTTCAAATGACAAAAGCGTACGTATCTTGAAAT
CCATCTCCGCCCCCGTTTGTGCTTCCTGATCTAGGCGGCGGAGACCCAGG
TAGGGCTGTTCAAGGATGGCTACGCCGAGCTGAAGACTTGTCTTGAGGAA
ATGAAGGCACACGGGCAATCGCCGCCGCCGGCTACCTCGCGCAGTCTGGC
AGACTCGTGTTCCGAAGAGGTGGGTCATGCATCGAATCACAGCTTCCTCG
ATGAGCCCCTTCACGAAACAAACCCTTGTCGATCGAACCGCCGTGCGTAA
TGCCGATGTCGATTAGCTATCTGCCGCGCGCTTTTCCCTCGACGAGCAAC
GTTTTAAACGGTCTTCTCATGTGACCCAAGGCGAGTTGCTCGTTGCCCCG
TGTTTTTCCTTCCCTGATCTGCCCGATCAAATCGAAATTCTCGGCTCTAC
CAACAGGCAAGGCCCGGCGGTGACGGCCGGGAGACGATCAAATCTGCCGA
GGAAAGAGAACGTTGGATGCTGACTATGCTAGCGACCGAGGAGGGGCTAA
ATCGCCAGGTGCGGAATGTCTGTCTTATGTGCGGTATGAGTGATTTCGGG
ATATTCCGTGGATGTTGCACGGCAGGACAGGGCACGTTTTCACGGCAGTA
CCTGTGAGATCCACGGCAACATAACGCCAGCTGCACATTACTGTTGGGCC
GCCATAACTTTCGCACTTCGTACGGACCAAATCCCTGGTTTTGATCGGAT
CCAAGCAGGTGCGGATGCTCCAGGACCTCCTACTGGAAGCGGTCTCAGCG
GCGACCCCGACCGTCGTCATGCCGGCGGCGGTCACACGGGCCGTCGACTC
CATCCGTCAAGGCCTAGGGCTACCTCCGCTGGTTCACTCCCCGGAACGGG
CCACCCCTACCCTTCGTCGCATGCCGTTTTCCTCGTCATCCCGCTATCCC
AGCGCCGCCGCCGCCACCGTAGCCGCAGCGGAGTCAATGCACAGCAGTAG
TGATCTTGAGACAGCGGGCTGTGGTCCGCATCGCGGAAGCGACGTCGAGA
GGCACTCCGGTCAAGGCCCAAGGGTCGAGTCCCCGACCCAGTACGGACCG
TCTGAAAGAGGGCAAAAGTACCACCACCAGATCCATGGCGATCGCCGCCC
GTCTGGGCAAACAGCAACGCCCGATGCCACCTCGCTCTCGTCCACGCTTG
AGGGCACCACAAACGACAAGCGTCTTGCGGTAGATGCCATGGGTGGCACC
AGCAGTCAGGGCAAGGTTACCGGTAGGGACATCCGCCCCGGCGACGGCAA
CACCGATGACAGCAGAAGCTGTACGGGCTCCGAAGGGAGCGGTACCCTTT
GGGTGCGAGTGGCGCCGACAGACGAAAGCTCTTCGGTGGAAGAAGACTTG
GACTCCCCGTCCTCGCAGGCGAGCTGCCGATACCGCGGCGTCGGGCCCGG
TGCTTCTCGGTGGAGAGGGCGGGACGAGATCCTCGAGCGATACCTCGGTG
GCGGGAGGGGTGGGGTGCCGAATGAGAAACCCGAGCCCGAAGGTCACCCT
GAAGGCAATCAACCAAGCCATGAGTTGCTTTCGTCCCCTCGTGCGTGGTC
TGCTGCTGGTCCATGCAACGGCAGAAGAAGTCGATGGCAAACGCCAGAGA
GAGGTGGTAATAGAAATAGGGAGAATACCGACCGGCCGCATTCTAGCCTA
GGGGAAGAGACGCTCATCCGAAACGTCCGCGACGACAGTAGGGCAGGGGC
GGAGAGGGGAAACAGGCGCAGGAGAGTGTTGGGTGCCGAGCTGGTGGCAT
CTGGAGGCGCCATGTCGGTGGGTAACTTCGCGGGTATGAGGAACACCAAC
GCCTCCGATACTCGGCCGTGCGTGCAAGATGTCGTCGAGAACGACGGGTC
TCCGAGTGGAGATGGGAAATGCACAAGAATCACGAGTAGCGAGGGTTGGC
GTGATCGTGATGGTCTCCCCGGGGGGGCGCAGAAAGCAAGTTCGAACGAG
TTCGACGGCCACCGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1758:104..2821+

>mRNA_Ecto-sp13_S_contig1758.5299.1 ID=mRNA_Ecto-sp13_S_contig1758.5299.1|Name=mRNA_Ecto-sp13_S_contig1758.5299.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1641bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1758:104..2821+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGCGCGAGAGACGGCGGAGCTCGAGAGAAGCGAACTGCGCCGGAGGCA
CGACGTTGAGATGTCCGCGAAACAATCTCGGATCGAGAGGCTCAAGCTCG
AGGTACGCAAGCTGGAGGCAGAGAGGGACGGCCTGAAACAGGCGGCGGAG
ACCCAGGTAGGGCTGTTCAAGGATGGCTACGCCGAGCTGAAGACTTGTCT
TGAGGAAATGAAGGCACACGGGCAATCGCCGCCGCCGGCTACCTCGCGCA
GTCTGGCAGACTCGTGTTCCGAAGAGGCAAGGCCCGGCGGTGACGGCCGG
GAGACGATCAAATCTGCCGAGGAAAGAGAACGTTGGATGCTGACTATGCT
AGCGACCGAGGAGGGGCTAAATCGCCAGCAGGTGCGGATGCTCCAGGACC
TCCTACTGGAAGCGGTCTCAGCGGCGACCCCGACCGTCGTCATGCCGGCG
GCGGTCACACGGGCCGTCGACTCCATCCGTCAAGGCCTAGGGCTACCTCC
GCTGGTTCACTCCCCGGAACGGGCCACCCCTACCCTTCGTCGCATGCCGT
TTTCCTCGTCATCCCGCTATCCCAGCGCCGCCGCCGCCACCGTAGCCGCA
GCGGAGTCAATGCACAGCAGTAGTGATCTTGAGACAGCGGGCTGTGGTCC
GCATCGCGGAAGCGACGTCGAGAGGCACTCCGGTCAAGGCCCAAGGGTCG
AGTCCCCGACCCAGTACGGACCGTCTGAAAGAGGGCAAAAGTACCACCAC
CAGATCCATGGCGATCGCCGCCCGTCTGGGCAAACAGCAACGCCCGATGC
CACCTCGCTCTCGTCCACGCTTGAGGGCACCACAAACGACAAGCGTCTTG
CGGTAGATGCCATGGGTGGCACCAGCAGTCAGGGCAAGGTTACCGGTAGG
GACATCCGCCCCGGCGACGGCAACACCGATGACAGCAGAAGCTGTACGGG
CTCCGAAGGGAGCGGTACCCTTTGGGTGCGAGTGGCGCCGACAGACGAAA
GCTCTTCGGTGGAAGAAGACTTGGACTCCCCGTCCTCGCAGGCGAGCTGC
CGATACCGCGGCGTCGGGCCCGGTGCTTCTCGGTGGAGAGGGCGGGACGA
GATCCTCGAGCGATACCTCGGTGGCGGGAGGGGTGGGGTGCCGAATGAGA
AACCCGAGCCCGAAGGTCACCCTGAAGGCAATCAACCAAGCCATGAGTTG
CTTTCGTCCCCTCGTGCGTGGTCTGCTGCTGGTCCATGCAACGGCAGAAG
AAGTCGATGGCAAACGCCAGAGAGAGGTGGTAATAGAAATAGGGAGAATA
CCGACCGGCCGCATTCTAGCCTAGGGGAAGAGACGCTCATCCGAAACGTC
CGCGACGACAGTAGGGCAGGGGCGGAGAGGGGAAACAGGCGCAGGAGAGT
GTTGGGTGCCGAGCTGGTGGCATCTGGAGGCGCCATGTCGGTGGGTAACT
TCGCGGGTATGAGGAACACCAACGCCTCCGATACTCGGCCGTGCGTGCAA
GATGTCGTCGAGAACGACGGGTCTCCGAGTGGAGATGGGAAATGCACAAG
AATCACGAGTAGCGAGGGTTGGCGTGATCGTGATGGTCTCCCCGGGGGGG
CGCAGAAAGCAAGTTCGAACGAGTTCGACGGCCACCGGTGA
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