mRNA_Ecto-sp13_S_contig17573.5296.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17573.5296.1
Unique NamemRNA_Ecto-sp13_S_contig17573.5296.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17573.5296.1 vs. uniprot
Match: A0A835ZLB8_9STRA (Calcium-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLB8_9STRA)

HSP 1 Score: 134 bits (336), Expect = 9.310e-35
Identity = 66/75 (88.00%), Postives = 72/75 (96.00%), Query Frame = 1
Query:    1 MIWAKHNGEEILDRVVEAFIIGVTIVVVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDK 225
            MIWA+H G+++L R+VEAFII VTI+VVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDK
Sbjct:  363 MIWARHGGQDVLQRIVEAFIICVTIIVVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDK 437          
BLAST of mRNA_Ecto-sp13_S_contig17573.5296.1 vs. uniprot
Match: A0A835ZDK6_9STRA (Calcium-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDK6_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.090e-33
Identity = 65/75 (86.67%), Postives = 70/75 (93.33%), Query Frame = 1
Query:    1 MIWAKHNGEEILDRVVEAFIIGVTIVVVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDK 225
            MIWA+H G++IL   V+AFII VTI+VVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDK
Sbjct:  383 MIWARHGGQDILQGFVDAFIIAVTIIVVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDK 457          
BLAST of mRNA_Ecto-sp13_S_contig17573.5296.1 vs. uniprot
Match: A0A6H5JXE6_9PHAE (Calcium-transporting ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXE6_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 2.510e-32
Identity = 66/75 (88.00%), Postives = 70/75 (93.33%), Query Frame = 1
Query:    1 MIWAKHNGEEILDRVVEAFIIGVTIVVVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDK 225
            MIWAKH+G+E+L+RVVEAFIIGVTIVV     GLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDK
Sbjct:  333 MIWAKHDGDEVLERVVEAFIIGVTIVV-----GLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDK 402          
BLAST of mRNA_Ecto-sp13_S_contig17573.5296.1 vs. uniprot
Match: A0A812UDP3_SYMMI (ACA6 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UDP3_SYMMI)

HSP 1 Score: 124 bits (311), Expect = 2.980e-32
Identity = 60/74 (81.08%), Postives = 69/74 (93.24%), Query Frame = 1
Query:    4 IWAKHNGEEILDRVVEAFIIGVTIVVVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDK 225
            IW +H+G+++LD  VEAFII VTI+VVAIPEGLPLAVTISLAYST+KMY+DQN IRVLAACETMGNATN+CSDK
Sbjct:  146 IWLRHHGKDVLDGFVEAFIIAVTIIVVAIPEGLPLAVTISLAYSTKKMYEDQNFIRVLAACETMGNATNLCSDK 219          
BLAST of mRNA_Ecto-sp13_S_contig17573.5296.1 vs. uniprot
Match: A0A482S1M4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S1M4_9ARCH)

HSP 1 Score: 116 bits (290), Expect = 1.390e-31
Identity = 59/74 (79.73%), Postives = 66/74 (89.19%), Query Frame = 1
Query:    4 IWAKHNGEEILDRVVEAFIIGVTIVVVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDK 225
            IWA+H+G  +L   V+AFII VTIVVVAIPEGLPLAVTI+LAYST+KMY+DQ  IRVLAACETMGNATNICSDK
Sbjct:   20 IWARHHGRGVLMGFVDAFIIAVTIVVVAIPEGLPLAVTIALAYSTKKMYQDQCFIRVLAACETMGNATNICSDK 93          
BLAST of mRNA_Ecto-sp13_S_contig17573.5296.1 vs. uniprot
Match: A0A482SEH8_9ARCH (HAD family hydrolase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEH8_9ARCH)

HSP 1 Score: 118 bits (296), Expect = 2.320e-29
Identity = 58/74 (78.38%), Postives = 67/74 (90.54%), Query Frame = 1
Query:    4 IWAKHNGEEILDRVVEAFIIGVTIVVVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDK 225
            IW +HNGE+I+   V+AFII VTIVVV+IPEGLPLAVT++LAYST+KMY+DQ  IRVLAACETMGNATNICSDK
Sbjct:   15 IWLRHNGEDIITNFVKAFIIAVTIVVVSIPEGLPLAVTLALAYSTKKMYQDQCFIRVLAACETMGNATNICSDK 88          
BLAST of mRNA_Ecto-sp13_S_contig17573.5296.1 vs. uniprot
Match: W7TSK5_9STRA (Calcium-transporting ATPase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSK5_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.510e-28
Identity = 60/73 (82.19%), Postives = 67/73 (91.78%), Query Frame = 1
Query:   10 AKH-NGEEILDRVVEAFIIGVTIVVVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDK 225
            A+H +G++I   ++ AFII VTI+VVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDK
Sbjct:  333 ARHPDGQKITSELINAFIIAVTIIVVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDK 405          
BLAST of mRNA_Ecto-sp13_S_contig17573.5296.1 vs. uniprot
Match: A0A7S3HT93_9STRA (Calcium-transporting ATPase n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HT93_9STRA)

HSP 1 Score: 111 bits (278), Expect = 6.320e-27
Identity = 56/74 (75.68%), Postives = 65/74 (87.84%), Query Frame = 1
Query:    4 IWAKHNGEEILDRVVEAFIIGVTIVVVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDK 225
            IWA+  G++ L+  + AFI+ +TIVVVAIPEGLPLAVTISLAYST+KMY+DQ  IRVLAACETMGNATNICSDK
Sbjct:  308 IWARDGGKDPLNGFINAFIVCITIVVVAIPEGLPLAVTISLAYSTKKMYQDQCFIRVLAACETMGNATNICSDK 381          
BLAST of mRNA_Ecto-sp13_S_contig17573.5296.1 vs. uniprot
Match: A0A7S3Y3S6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3S6_HETAK)

HSP 1 Score: 110 bits (276), Expect = 1.090e-26
Identity = 58/78 (74.36%), Postives = 66/78 (84.62%), Query Frame = 1
Query:    1 MIWAKHN---GEEILDRVVEAFIIGVTIVVVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDK 225
            MIW +H+   G +I   V+ AFI+ VTIVVVAIPEGLPLAVTI+LAYS+RKMY+DQNLIR LAACETMGNAT ICSDK
Sbjct:   97 MIWVEHDSPTGGQISKGVIHAFIMAVTIVVVAIPEGLPLAVTIALAYSSRKMYEDQNLIRTLAACETMGNATTICSDK 174          
BLAST of mRNA_Ecto-sp13_S_contig17573.5296.1 vs. uniprot
Match: A0A7S2VWE4_9STRA (Calcium-transporting ATPase n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VWE4_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.180e-26
Identity = 54/75 (72.00%), Postives = 65/75 (86.67%), Query Frame = 1
Query:    1 MIWAKHNGEEILDRVVEAFIIGVTIVVVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDK 225
            MIW +H+G+++L  V+EAFII VTI+VVAIPEGLPLAV ISL+YS+R+M  D NLIR L ACETMGNATNIC+DK
Sbjct:  340 MIWLRHDGDDVLHYVIEAFIIAVTIIVVAIPEGLPLAVAISLSYSSRQMLMDGNLIRKLEACETMGNATNICTDK 414          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17573.5296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZLB8_9STRA9.310e-3588.00Calcium-transporting ATPase n=1 Tax=Tribonema minu... [more]
A0A835ZDK6_9STRA2.090e-3386.67Calcium-transporting ATPase n=1 Tax=Tribonema minu... [more]
A0A6H5JXE6_9PHAE2.510e-3288.00Calcium-transporting ATPase n=2 Tax=Ectocarpus Tax... [more]
A0A812UDP3_SYMMI2.980e-3281.08ACA6 protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A482S1M4_9ARCH1.390e-3179.73Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A482SEH8_9ARCH2.320e-2978.38HAD family hydrolase n=1 Tax=archaeon TaxID=190666... [more]
W7TSK5_9STRA1.510e-2882.19Calcium-transporting ATPase n=2 Tax=Monodopsidacea... [more]
A0A7S3HT93_9STRA6.320e-2775.68Calcium-transporting ATPase n=2 Tax=Spumella elong... [more]
A0A7S3Y3S6_HETAK1.090e-2674.36Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2VWE4_9STRA1.180e-2672.00Calcium-transporting ATPase n=1 Tax=Triparma pacif... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17573contigEcto-sp13_S_contig17573:689..1632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score147.1
Seed ortholog evalue3.2e-33
Seed eggNOG ortholog2880.D7G3Y5
Model size225
KEGG koko:K01537,ko:K05850
KEGG TC3.A.3.2
KEGG Pathwayko04020,ko04022,ko04024,ko04261,ko04925,ko04970,ko04972,map04020,map04022,map04024,map04261,map04925,map04970,map04972
Hectar predicted targeting categorysignal anchor
Exons2
EggNOG free text desc.calcium-transporting ATPase activity
EggNOG OGsCOG0474@1,KOG0204@2759
EC3.6.3.8
Cds size225
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462913.8420782-CDS-Ecto-sp13_S_contig17573:688..8171681462913.8420782-CDS-Ecto-sp13_S_contig17573:688..817Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17573 689..817 -
1681462913.8533409-CDS-Ecto-sp13_S_contig17573:1536..16321681462913.8533409-CDS-Ecto-sp13_S_contig17573:1536..1632Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17573 1537..1632 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17573.5296.1prot_Ecto-sp13_S_contig17573.5296.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17573 689..1632 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17573.5296.1

>prot_Ecto-sp13_S_contig17573.5296.1 ID=prot_Ecto-sp13_S_contig17573.5296.1|Name=mRNA_Ecto-sp13_S_contig17573.5296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=75bp
MIWAKHNGEEILDRVVEAFIIGVTIVVVAIPEGLPLAVTISLAYSTRKMY
KDQNLIRVLAACETMGNATNICSDK
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mRNA from alignment at Ecto-sp13_S_contig17573:689..1632-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17573.5296.1 ID=mRNA_Ecto-sp13_S_contig17573.5296.1|Name=mRNA_Ecto-sp13_S_contig17573.5296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=944bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17573:689..1632- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCTGGGCCAAGCACAACGGCGAGGAGATTCTGGACAGGGTGGTCGA GGCTTTCATCATCGGTGTCACCATCGTCGTGGTTGCGATCCCCGAGGTGA ATCTTTGTTATTGTTTTGTCTACACTAGAGAACCGTTCCGGTGTCCTCTC TGTCTACCCAGCACCTTCATCTTTCAGCACTGGTGTACCACTGACGCTGT CGATTCCGGTGGTCACAGGCGAACTACCCTAAAAAAAGTGTATTCTCAAA TATGGTGTAAAACGTGATGTTTTTCACGCACATCTTTGTGGGCACATGGG CATGGCAGTAGGTATTTCAGGGTTACCTTACTGCTGATGGTATTCTACTG CTTCAGCATGAAGCCTCTAGTTTTTCAACTCGAGCTCGGTCAGCTTCTGG CGTCTCCTCGTCGTCTCTTTCCACCCTAGCTTCGAGTCCGACGTGCTGCA TCCCCTTGAGCTTTGTCCAAAGTGAACCTCGCTTTTTCCGTTCGAGCGCC ACCACCGCCGTCGATTCGCTTGCACACATGTGGCCCGGAGCGTTCTTCCT GCCGACTCGCGTTGTTTGCTGTTGTCTTCACTTTCAAACAGCAGTTGCGA CCCCTGCTCACTACGTCGTAACTTACATGCGTAACCTGTGTGTGGCTTTT GTTGCTGTTGTGTTTACACGATCAAAACCGTTTTCATCTCTGCTCACGTC CCTGCCCATCTGGCGCTAATAGACACCTTGCGTGCCCACAGGCGAGAGTC AACTAAGTGTACCTTCGACACATGGAACTTTTGTTTATCGGCGTGCGTCT TCTGTTTTCGTGCAGGGGCTTCCCCTTGCCGTTACGATTTCGCTGGCGTA CTCGACGAGGAAGATGTACAAGGACCAGAACCTCATCCGCGTGCTGGCCG CATGCGAGACCATGGGCAACGCCACCAACATCTGCTCAGACAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17573:689..1632-

>mRNA_Ecto-sp13_S_contig17573.5296.1 ID=mRNA_Ecto-sp13_S_contig17573.5296.1|Name=mRNA_Ecto-sp13_S_contig17573.5296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17573:689..1632- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCTGGGCCAAGCACAACGGCGAGGAGATTCTGGACAGGGTGGTCGA
GGCTTTCATCATCGGTGTCACCATCGTCGTGGTTGCGATCCCCGAGGGGC
TTCCCCTTGCCGTTACGATTTCGCTGGCGTACTCGACGAGGAAGATGTAC
AAGGACCAGAACCTCATCCGCGTGCTGGCCGCATGCGAGACCATGGGCAA
CGCCACCAACATCTGCTCAGACAAG
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