mRNA_Ecto-sp13_S_contig1757.5293.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1757.5293.1
Unique NamemRNA_Ecto-sp13_S_contig1757.5293.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1757.5293.1 vs. uniprot
Match: D7FP47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP47_ECTSI)

HSP 1 Score: 492 bits (1266), Expect = 4.490e-169
Identity = 316/353 (89.52%), Postives = 325/353 (92.07%), Query Frame = 1
Query:    1 MVKRRRSSGPPAAAYPEAAGNSSTSFSQSPDQPPATAVEEATDAEGRQRCEGVKEEEEEGHDTPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----ADEEGEDAXXXXXXXXXXXXXXXXXTMSDTVYVEGIPWTCDEIDVRQFFKGCGKITDVRMPRWQDSGRPRGYAHVAFAGSSGARAAFGRDGQYLNGRYLTVQQMTVESNNHAVQAPQEPATEKARRANRKAEQPAGCRTVFVKNLPYDVEEDAVSEALAGCGRIASVRLAMWNHTRKLKGFGYVEFSTERGAETCVRTQQSLSVGGRPLVVDFETGAPKGSFRRQDGAQIKKTSADAGVGKGKAPKFKVHV 1047
            MVKRRRS+GPPAAA PEAA NSSTSFSQS D+PPA AV EA DAE RQ C+  KEE         XXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXX    ADEEGE  XXXXXXXXXXXXXXXXXTMSDTVYVEGIPWTCDE DVR+FFKGCGKITDVRMPRWQDSGRPRGYAHVAFAGSSGARAAFGRDGQYLNGRYLTVQQ+TVESNNHA+QAPQEPATEKARRANRKAEQP GCRTVFVKNLPYDV+EDAVSEALAGCGRIASVRLAMWNHTRKLKGFGYVEFSTERGAETCVRTQQ+LS+GGRPLVVDFETGAPKGSFRRQDGAQIKKTSADAGVGKGKAPKFKVHV
Sbjct:    1 MVKRRRSNGPPAAADPEAAENSSTSFSQSADKPPA-AVGEAADAEDRQGCKDAKEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKXXXXXXXXXEGADEEGE-XXXXXXXXXXXXXXXXXXTMSDTVYVEGIPWTCDESDVREFFKGCGKITDVRMPRWQDSGRPRGYAHVAFAGSSGARAAFGRDGQYLNGRYLTVQQITVESNNHALQAPQEPATEKARRANRKAEQPTGCRTVFVKNLPYDVDEDAVSEALAGCGRIASVRLAMWNHTRKLKGFGYVEFSTERGAETCVRTQQNLSIGGRPLVVDFETGAPKGSFRRQDGAQIKKTSADAGVGKGKAPKFKVHV 351          
BLAST of mRNA_Ecto-sp13_S_contig1757.5293.1 vs. uniprot
Match: A0A6H5KZ63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ63_9PHAE)

HSP 1 Score: 481 bits (1237), Expect = 7.240e-165
Identity = 298/351 (84.90%), Postives = 307/351 (87.46%), Query Frame = 1
Query:    1 MVKRRRSSGPPAAAYPEAAGNSSTSFSQSPDQPPATAVEEATDAEGRQRCEGVKEEEEEGHDTPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADEEGED--AXXXXXXXXXXXXXXXXXTMSDTVYVEGIPWTCDEIDVRQFFKGCGKITDVRMPRWQDSGRPRGYAHVAFAGSSGARAAFGRDGQYLNGRYLTVQQMTVESNNHAVQAPQEPATEKARRANRKAEQPAGCRTVFVKNLPYDVEEDAVSEALAGCGRIASVRLAMWNHTRKLKGFGYVEFSTERGAETCVRTQQSLSVGGRPLVVDFETGAPKGSFRRQDGAQIKKTSADAGVGKGKAPKFKVHV 1047
            MVKRRRSSG PA+A P AA NSSTS SQSPDQPPATAVEEAT+A+ RQ CE VKE EEEGHDTPA             XXXXXXXXXXXXXXXXXXXX         AXXXXXXXXXXXXXXXXXT++DTVYVEGIPWTCDE DVR+FFKGCGKITDVRMPRWQDSGRPRGYAHVAFAGSSGA+AAFGRDGQYLNGRYLTVQ            APQEPATEKARRANRKAEQPAGCRTVFVKNLPYDVEEDAVSEALAGCGRIASVRLAMWNHTRKLKGFGYVEFSTERGAETCVRTQQSLS+GGRPLVVDFETGAPKGSFRRQDGAQIKKTSADAGVGKGKAPKFKVH+
Sbjct:    1 MVKRRRSSGSPASADPGAAENSSTSCSQSPDQPPATAVEEATNAKHRQGCEDVKEVEEEGHDTPAGAGQEGGEAGEKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXXXTIADTVYVEGIPWTCDESDVREFFKGCGKITDVRMPRWQDSGRPRGYAHVAFAGSSGAQAAFGRDGQYLNGRYLTVQ------------APQEPATEKARRANRKAEQPAGCRTVFVKNLPYDVEEDAVSEALAGCGRIASVRLAMWNHTRKLKGFGYVEFSTERGAETCVRTQQSLSIGGRPLVVDFETGAPKGSFRRQDGAQIKKTSADAGVGKGKAPKFKVHL 339          
BLAST of mRNA_Ecto-sp13_S_contig1757.5293.1 vs. uniprot
Match: A0A836CEI7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEI7_9STRA)

HSP 1 Score: 221 bits (564), Expect = 2.570e-62
Identity = 109/206 (52.91%), Postives = 141/206 (68.45%), Query Frame = 1
Query:  379 DTVYVEGIPWTCDEIDVRQFFKGCGKITDVRMPRWQDSGRPRGYAHVAFAGSSGARAAFGRDGQYLNGRYLTVQQMTVESNNHAVQAPQEPATEKARRANRKAEQPAGCRTVFVKNLPYDVEEDAVSEALAGCGRIASVRLAMWNHTRKLKGFGYVEFSTERGAETCVRTQQSLSVGGRPLVVDFETGAPKGSFRRQDGAQIKKTS 996
            DTVYVEGIP++  E DV +FF  CG++  VRMPR+QDSGRPRGYAHV FA  + A  AF +DG+YL GRYL VQQ        A+QA  + A          A +P GCRTVFVKNLPYD +E  V++A + CG +A VRLA+WN+T++ KGFGYV+F+ E GA+  V  Q ++ V GRP++VD+E G  KGSFR  DG + +K +
Sbjct:  230 DTVYVEGIPYSASEADVSKFFSDCGEVISVRMPRYQDSGRPRGYAHVVFASDAAAAKAFKKDGEYLQGRYLKVQQAQAP---RALQAQSQAAA---------APRPKGCRTVFVKNLPYDADEQMVTKAFSKCGEVAIVRLAIWNNTKQRKGFGYVDFADETGAQAAVERQANIKVAGRPVLVDYEVGRVKGSFRLADGQKYEKVA 423          
BLAST of mRNA_Ecto-sp13_S_contig1757.5293.1 vs. uniprot
Match: A0A225WYL6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WYL6_9STRA)

HSP 1 Score: 189 bits (481), Expect = 2.340e-52
Identity = 100/200 (50.00%), Postives = 133/200 (66.50%), Query Frame = 1
Query:  382 TVYVEGIPWTCDEIDVRQFFKGCGKITDVRMPRWQDSGRPRGYAHVAFAGSSGARAAFGRDGQYLNGRYLTVQQMTVESNNHAVQAPQEPATEKARRANRKAEQPAGCRTVFVKNLPYDVEEDAVSEALAGCGRIASVRLAMWNHTRKLKGFGYVEFSTERGAETCVRTQQSLSVGGRPLVVDFETG--APKGSFRRQDG 975
            TVYVEGIP+  +E D+   F  CG + +VRMPR+QDSG+PRGYAHV F   +  + A   DGQYL  RYL++++        A +A +    EK +  N+KA +  GCRTVF+K LPY+VEEDA+ EALA CG I SVRL +WNHT+KLKGFGYVEFS+E  A    R +  + +G R +++  +    APK SFR++DG
Sbjct:   64 TVYVEGIPYRANEGDLVTHFSSCGTVREVRMPRYQDSGKPRGYAHVVFDDEAALKKALKLDGQYLFNRYLSIRRA------EAPRAVEMALKEKNQNTNKKAVK--GCRTVFIKQLPYEVEEDAIREALASCGTITSVRLPIWNHTKKLKGFGYVEFSSEDEALAAAR-RSGMKIGDRMVLISLDAAGSAPKASFRQRDG 254          
BLAST of mRNA_Ecto-sp13_S_contig1757.5293.1 vs. uniprot
Match: A0A485L4I6_9STRA (Aste57867_15645 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L4I6_9STRA)

HSP 1 Score: 190 bits (482), Expect = 2.490e-52
Identity = 101/239 (42.26%), Postives = 141/239 (59.00%), Query Frame = 1
Query:  382 TVYVEGIPWTCDEIDVRQFFKGCGKITDVRMPRWQDSGRPRGYAHVAFAGSSGARAAFGRDGQYLNGRYLTVQQMTVESNNHAVQAPQEPATEKARRANRKAEQPA-GCRTVFVKNLPYDVEEDAVSEALAGCGRIASVRLAMWNHTRKLKGFGYVEFSTERGAETCVRTQQSLSVGGRPLVVDFETGAPKGSFRRQDG--------------------AQIKKTSADAGVGKGKAPKF 1035
            T+YVEGI +  DE  +   F  CG + +VR+PRW DSG+PRGY HV F   + A+ A   DG+Y+  RYLT++Q          +AP+    E+A +  +++ +P  GCRTV++K LPY+VEED V +ALA CG I SVRL MW HT+KLKGFGYVEF+ E GA    + +  + +G R +++D +TGAPK SFR+ +G                     + K++ A  G  K K PK 
Sbjct:   77 TIYVEGISYDADESALVTHFSSCGHVKEVRLPRWHDSGKPRGYGHVVFETEAAAKKALALDGKYMLKRYLTIRQ---------AEAPR--GIERAVQNRKQSAKPTKGCRTVYIKQLPYEVEEDTVKQALASCGEILSVRLPMWGHTKKLKGFGYVEFADEAGAVKATK-RSGMKIGDRMVLIDLDTGAPKASFRQTNGQYWNKGEEGKASLAKRMGDKGKKKRSDASGGAEKAKKPKL 303          
BLAST of mRNA_Ecto-sp13_S_contig1757.5293.1 vs. uniprot
Match: A0A2D4BXX0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXX0_PYTIN)

HSP 1 Score: 192 bits (488), Expect = 2.580e-52
Identity = 111/231 (48.05%), Postives = 142/231 (61.47%), Query Frame = 1
Query:  382 TVYVEGIPWTCDEIDVRQFFKGCGKITDVRMPRWQDSGRPRGYAHVAFAGSSGARAAFGRDGQYLNGRYLTVQQMTVESNNHAVQAPQEPATEKARRANRKAEQPA--GCRTVFVKNLPYDVEEDAVSEALAGCGRIASVRLAMWNHTRKLKGFGYVEFSTERGAETCVRTQQSLSVGGRPLVVDFETG--APKGSFRRQDGA------QIKKTSADAGVGKGKAPKFKVH 1044
            TVYVEGIP+  DE D+   F  CG + +VRMPR+QDSG+PRGYAHV F  +S    A   DG+YL GRYLTV+Q             + P T       +K+ + A  GCRTVF+K+LPYDVEE AV EALA CG I SVRL +WNHT+KLKGFGYVEFS+E  A   V+ +  + +G R +++  ET   APK SFR +DG       + KK+ A     K K+ ++  H
Sbjct:  150 TVYVEGIPYKADEGDLVSHFSSCGIVKEVRMPRYQDSGKPRGYAHVVFESASSIPKALKLDGKYLFGRYLTVKQA------------ERPRTLDVALQEQKSVKKAVKGCRTVFIKHLPYDVEEAAVREALASCGTILSVRLPLWNHTKKLKGFGYVEFSSEDEAIAAVK-RSGMKIGDRMVIISLETAGSAPKASFRLRDGRFWNKDEEAKKSLAKKLSDKPKSQRWSRH 367          
BLAST of mRNA_Ecto-sp13_S_contig1757.5293.1 vs. uniprot
Match: W7TYE4_9STRA (31 kDa chloroplastic n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYE4_9STRA)

HSP 1 Score: 189 bits (481), Expect = 2.850e-52
Identity = 104/206 (50.49%), Postives = 129/206 (62.62%), Query Frame = 1
Query:  382 TVYVEGIPWTCDEIDVRQFF--KGCGKITDVRMPRWQDSGRPRGYAHVAFAGSS-GARAAFGRDGQYLNGRYLTVQQMTVESNNHAVQAPQEPATEKARRANRKAEQPAGCRTVFVKNLPYDVEEDAVSEALAGCGRIASVRLAMWNHTRKLKGFGYVEFSTERGAETCVRTQQSLSVGGRPLVVDFETGAPKGSFRRQDGAQIKK 990
            TVYVEGI +   E D+ +FF  KGCGK+ +VR+PRWQDSGRPRGYAH+ F  +  G   A    G  + GRYLTVQ+          QAP+      +     K   P GC TVFVKNLPY+  EDAV EA   CG+I +VRLA+W HT++ KGF YV+F  E  AE  V+ Q ++ VGGR + VD+ETGAPK S+R  DG Q  K
Sbjct:   95 TVYVEGISYEATEDDLVRFFQDKGCGKVKEVRLPRWQDSGRPRGYAHIEFKKTDEGVAKALSLSGARMMGRYLTVQR---------AQAPKSLGVGGSLPLKDK---PPGCDTVFVKNLPYNTTEDAVREAFTFCGKIKTVRLAVWQHTQQQKGFCYVQFEKENAAEIAVKKQGAIQVGGRKVFVDYETGAPKASYRAPDGRQWSK 288          
BLAST of mRNA_Ecto-sp13_S_contig1757.5293.1 vs. uniprot
Match: A0A6G0WFD1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WFD1_9STRA)

HSP 1 Score: 187 bits (476), Expect = 1.750e-51
Identity = 93/198 (46.97%), Postives = 127/198 (64.14%), Query Frame = 1
Query:  382 TVYVEGIPWTCDEIDVRQFFKGCGKITDVRMPRWQDSGRPRGYAHVAFAGSSGARAAFGRDGQYLNGRYLTVQQMTVESNNHAVQAPQEPATEKARRANRKAEQPAGCRTVFVKNLPYDVEEDAVSEALAGCGRIASVRLAMWNHTRKLKGFGYVEFSTERGAETCVRTQQSLSVGGRPLVVDFETGAPKGSFRRQDG 975
            T+YVEG+ +  DE  +   F  CG + +VR+PR+QDSGRPRGYAHV F   + A+ A   DG+YL  RYLT++           + P+    ++AR + +  +   GCRTVF+K LPYDV+E  V EAL+ CG I SVRL +WNHT+KLKGFGYVEF+ E  A    + +  + +G R +++D +TGAPK SFR  DG
Sbjct:   79 TIYVEGMSYDADESALVSHFSSCGTVREVRLPRYQDSGRPRGYAHVVFDSEASAKKALALDGKYLLKRYLTIR---------PAETPR--GMDQARSSRKNVKITKGCRTVFIKQLPYDVDEATVKEALSSCGDIVSVRLPLWNHTKKLKGFGYVEFADEASAVEATK-KSGMKIGSRMVLIDLDTGAPKASFRNTDG 264          
BLAST of mRNA_Ecto-sp13_S_contig1757.5293.1 vs. uniprot
Match: A0A662XMP9_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XMP9_9STRA)

HSP 1 Score: 188 bits (477), Expect = 4.750e-51
Identity = 100/200 (50.00%), Postives = 132/200 (66.00%), Query Frame = 1
Query:  382 TVYVEGIPWTCDEIDVRQFFKGCGKITDVRMPRWQDSGRPRGYAHVAFAGSSGARAAFGRDGQYLNGRYLTVQQMTVESNNHAVQAPQEPATEKARRANRKAEQPAGCRTVFVKNLPYDVEEDAVSEALAGCGRIASVRLAMWNHTRKLKGFGYVEFSTERGAETCVRTQQSLSVGGRPLVVDFET--GAPKGSFRRQDG 975
            TVYVEGIP+  DE D+   F  CG + +VRMPR+QDSG+PRGYAHV F   +    A   DG+YL  RYL+V++        A ++ +    E+++ A +KA +  GCRTVF+K LPYDVEEDAV  ALA CG + SVRL  WNHT+KLKGFGYVEFS+E  A    R +  + +G R +++  +   GAPK SFR++DG
Sbjct:  125 TVYVEGIPYRADEGDLVTHFSSCGAVREVRMPRYQDSGKPRGYAHVVFEDEAALEKALKLDGKYLFSRYLSVRRA------EAPRSAELALKEQSQNATKKAVK--GCRTVFIKQLPYDVEEDAVRAALASCGTVTSVRLPFWNHTKKLKGFGYVEFSSEDEALAASR-RSGMKIGDRMVLISLDVAGGAPKASFRQRDG 315          
BLAST of mRNA_Ecto-sp13_S_contig1757.5293.1 vs. uniprot
Match: A0A0P1AQN1_PLAHL (31 kDa chloroplastic n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AQN1_PLAHL)

HSP 1 Score: 186 bits (471), Expect = 5.750e-51
Identity = 95/200 (47.50%), Postives = 132/200 (66.00%), Query Frame = 1
Query:  382 TVYVEGIPWTCDEIDVRQFFKGCGKITDVRMPRWQDSGRPRGYAHVAFAGSSGARAAFGRDGQYLNGRYLTVQQMTVESNNHAVQAPQEPATEKARRANRKAEQPAGCRTVFVKNLPYDVEEDAVSEALAGCGRIASVRLAMWNHTRKLKGFGYVEFSTERGAETCVRTQQSLSVGGRPLVVDFETG--APKGSFRRQDG 975
            TVYVEGIP+  +E D+  +F  CG + +VRMPR+QDSG+PRGYAHV F   +    A   DG+YL  RYL++++          +A ++  TEK++ A +K  +  GCRTV++K LPY+VEE  + EALA CG I SVRL +WNHT+KLKGFGYVEFS+E  A    R +  + +G R +++  +    APK SFR++DG
Sbjct:   61 TVYVEGIPYEANESDLVTYFSSCGTVREVRMPRYQDSGKPRGYAHVVFDEEASLEMALKLDGKYLFKRYLSIRRAETP------RAVEQALTEKSQNATKKVIK--GCRTVYIKQLPYEVEEGTIREALASCGTITSVRLPIWNHTKKLKGFGYVEFSSENEALAAAR-RSGMKIGDRMVIISLDASGSAPKSSFRQRDG 251          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1757.5293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP47_ECTSI4.490e-16989.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZ63_9PHAE7.240e-16584.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CEI7_9STRA2.570e-6252.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A225WYL6_9STRA2.340e-5250.00Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A485L4I6_9STRA2.490e-5242.26Aste57867_15645 protein n=1 Tax=Aphanomyces stella... [more]
A0A2D4BXX0_PYTIN2.580e-5248.05Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
W7TYE4_9STRA2.850e-5250.4931 kDa chloroplastic n=2 Tax=Monodopsidaceae TaxID... [more]
A0A6G0WFD1_9STRA1.750e-5146.97Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A662XMP9_9STRA4.750e-5150.00Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A0P1AQN1_PLAHL5.750e-5147.5031 kDa chloroplastic n=1 Tax=Plasmopara halstedii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1757contigEcto-sp13_S_contig1757:10990..14507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score495.7
Seed ortholog evalue1.7e-137
Seed eggNOG ortholog2880.D7FP47
Model size1676
KEGG koko:K11294
KEGG Pathwayko05130,map05130
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.rRNA processing
EggNOG OGsKOG4210@1,KOG4210@2759
Ec32 ortholog descriptionNucleotide-binding alpha-beta plait domain
Ec32 orthologEc-10_002460.1
Cds size1050
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462913.726625-UTR-Ecto-sp13_S_contig1757:10989..116151681462913.726625-UTR-Ecto-sp13_S_contig1757:10989..11615Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1757 10990..11615 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462913.7421274-CDS-Ecto-sp13_S_contig1757:11615..118341681462913.7421274-CDS-Ecto-sp13_S_contig1757:11615..11834Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1757 11616..11834 -
1681462913.7528565-CDS-Ecto-sp13_S_contig1757:12459..126901681462913.7528565-CDS-Ecto-sp13_S_contig1757:12459..12690Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1757 12460..12690 -
1681462913.763799-CDS-Ecto-sp13_S_contig1757:13345..135551681462913.763799-CDS-Ecto-sp13_S_contig1757:13345..13555Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1757 13346..13555 -
1681462913.7807074-CDS-Ecto-sp13_S_contig1757:14117..145071681462913.7807074-CDS-Ecto-sp13_S_contig1757:14117..14507Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1757 14118..14507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1757.5293.1prot_Ecto-sp13_S_contig1757.5293.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1757 11616..14507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1757.5293.1

>prot_Ecto-sp13_S_contig1757.5293.1 ID=prot_Ecto-sp13_S_contig1757.5293.1|Name=mRNA_Ecto-sp13_S_contig1757.5293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=350bp
MVKRRRSSGPPAAAYPEAAGNSSTSFSQSPDQPPATAVEEATDAEGRQRC
EGVKEEEEEGHDTPAGAGQEGGGASEKRKRKRTRTRKKKKGGGGSGEGAD
EEGEDAAGGGGGGGVAGGGGGGGTMSDTVYVEGIPWTCDEIDVRQFFKGC
GKITDVRMPRWQDSGRPRGYAHVAFAGSSGARAAFGRDGQYLNGRYLTVQ
QMTVESNNHAVQAPQEPATEKARRANRKAEQPAGCRTVFVKNLPYDVEED
AVSEALAGCGRIASVRLAMWNHTRKLKGFGYVEFSTERGAETCVRTQQSL
SVGGRPLVVDFETGAPKGSFRRQDGAQIKKTSADAGVGKGKAPKFKVHV*
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mRNA from alignment at Ecto-sp13_S_contig1757:10990..14507-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1757.5293.1 ID=mRNA_Ecto-sp13_S_contig1757.5293.1|Name=mRNA_Ecto-sp13_S_contig1757.5293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3518bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1757:10990..14507- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCAAGAGAAGGCGAAGCAGCGGCCCTCCTGCCGCTGCCTATCCGGA GGCAGCAGGAAACTCGTCAACTTCTTTCAGCCAGTCACCGGACCAGCCGC CAGCAACAGCAGTAGAAGAGGCCACGGACGCGGAAGGCCGACAACGATGC GAGGGTGTCAAGGAGGAGGAGGAGGAGGGACATGATACACCTGCAGGAGC CGGGCAGGAAGGCGGCGGGGCAAGCGAAAAGCGAAAGCGAAAACGAACGC GGACGCGGAAAAAGAAGAAGGGCGGCGGTGGAAGCGGTGAAGGTGCCGAT GAAGAGGGCGAGGACGCGGCCGGTGGTGGAGGAGGCGGCGGAGTTGCCGG GGGAGGAGGAGGGGGGGGAACGATGTCGGACACTGTTTACGTGAGTTCTT GCAGTGCGTACCAAGATTGCTTTCTGTTAAGGGTGTGTGGTGGGGGTCGA CCTCGACAGCCAGAAATTCCGGTCTCATCGACCAACCGGTACAAGACGAG GACACAGAACACTGCCGTATTTCGCGTTGAGGTTGGTTCTCCGCGACGCA CGCCCTCTCACTTGCCGAGTGGCTGGCCGATCTTGTACGGTTGCGGTGGT AGCAAGAGTACGGGGTATGTGCGTAGGTGGTGATGCGATCGGCGATTAGC GAGAGTACAAATGCACCGAGATACTGACTTAGTCTAGGCAGCAGTATCGT GCAGCGCCCTGTTTCTGCAGGAGCCTACCGAAGCACTCCCGTCTTCGTAC TGGAGAGAAACATTGGCACCAGTCATCCTTCACAAACAACGAAGCACCTG TCTTTGGGTACATACCACCAGCAGCGTTTCCAACACAACCGAGACATCCT CTCACAACTACTCCTGTCGCCCCCATCCTGCCAGCAACGAACGCCCTTTC GCCCGGCCGCCATCTCGCCAACACGCCCTGAACTGACCGCGAAACATGTC AGGTCGAGGGCATCCCTTGGACCTGCGACGAGATCGACGTCCGCCAGTTC TTCAAGGGCTGCGGCAAGATCACCGACGTCCGGATGCCGAGGTGGCAGGA CTCCGGCCGGCCCCGCGGCTACGCGCATGTGGCCTTCGCCGGCTCCAGCG GCGCGCGGGCGGCGTTCGGCCGCGACGGGCAGTACCTCAACGGGCGCTAC CTCACGGTGCAGGTGATCGGGGGTGGAGCGAGACACACACACACACGCAC ACACTAAATGCCATTAGCTGGGAGCCCATTGAGGGTCCCAGTCAATGGCC TTTAGAAGTGTTTCGTGTTTTCAACCGCACTGAGACTGAGTCTTTTCGTT GGTCAGCCGGTTAGCGCGGCCGATGTCAACAAGATAGACACACACATCAC ACGGCCGGGGTAGAGAGCTGGGTGCTTGTTGCATTCGGTGGCGGCGGTCA AACGGATCGTGGTTGCTTGGTAGTGCTTGGCGGTACTAGCGTGGTGTTGC TGATGTTGGGGGCATTTTTTTTCCCGGACTTAGTGTGTCACCGGCAGTGG ATGATGGTCGTATCTTTGTTGTTGATTTATTTTGTACGTCAAACCGAATA AGTTTCTCGTTGTGTTTTTTGTTTCAGTGTGTGTTGTTTTCTTTCCCAAG GGACGGGCGAAGAGACGAGCTGCCCATTTCACCGCATCGCGAGAATCGTG TAAGAGCGAAATAGGCGGGCCGCCACTGCCATCGTTTGTGCCCCCCACCG AACTATGTAGCTCCCCGCGAGAGCTCCTTTCCGTGAGGAAGTCCCCAACT TTCAACAACCACACCCATCGTAGCACCAACAACAAACACAGCATGACATA TGAGATGTACGGCACAGCAAATGACGGTAGAAAGCAACAACCACGCCGTC CAGGCGCCGCAAGAGCCCGCGACGGAGAAGGCGAGGCGAGCCAACCGCAA GGCGGAGCAACCGGCGGGGTGCAGGACGGTCTTTGTGAAGAACTTGCCGT ACGACGTGGAAGAGGACGCGGTCAGCGAGGCCCTCGCCGGCTGCGGCCGC ATCGCCTCCGTGCGCCTGGCCATGTGGAACCACACTCGCAAGCTCAAGGT ACGAATGTTTTGACCGGGGGGGAGGGAGTATGACGCGAGCCAGAGTTGGA TAGGGGGAAGGCCTCGCCGACTTTCAGAAGCATGGCGTTGTCCAAATGAT TGCGAAAACTGGTGTGCGCAGTTTGGTGGAAAGTGCCGAGCTTTCGGCAA AACATGTCTTTGGGAAAGACTCGCAGTTCAGTAGACATACACAGGCGCAG TGGCGCACGCCTCTTTTGTGTGGCATGCCGGGGAGCAACCCGTTCGTCTG TTTCTTCCGGATCGACAAGAGAGTCGTCCTGCTGTTTCGGCTGATGAATA TTTGTATCCCAAGACCACCTCTTGTGTCTCACGCCCGAGGAGAAATTGCC TCCAGCGGTGGTAATCCCGGTGCAACGACCACATGTTTAGCGACACGCCT TTCATACGTAGCTACCACGATACCACGTGCCACGGCTGCACCGCCGAACT GATATGGTGAATTACGTCCCGGGAATTGGCGACCTGCCCTCAATAGCAAC CATATCCTGTTAATGGGGGTTCCACCGAGGAGAGCGCCGTCCCCACCGCA CCGACCAAACCCCGCCACGATGCTCTTGCGAAACGTTCACGCTGCCGACC ACGGGGGACATTGCACGCAAAAGGGGTTCGGGTACGTCGAGTTTTCGACA GAGAGGGGGGCAGAGACCTGCGTCCGGACGCAGCAGAGCCTGTCCGTCGG GGGGCGCCCGCTGGTGGTCGACTTTGAGACGGGCGCGCCCAAGGGCTCCT TCCGGAGGCAGGACGGGGCTCAGATAAAGAAGACGTCGGCCGATGCCGGG GTCGGCAAGGGGAAGGCTCCAAAATTTAAGGTTCACGTTTGAGACGGGGG GAGGGGGGGGAGTGACCTGATACCGCGTGCTTATTTTCAGTGAGAGGAGA GAAAAGGCGAGCGTTGTGTCATGAGTTTGCTGGCGGCTGGGCGTGTGAAA GGACTAGTTATGAGCAATGCTTGCGCGTGCATGTGTGGTAGCTACTGCCC TGAACTGCTTACCCACAAGTGCGGGGTGAGGATGAGAAGTGTACGTTCCA GATGCAGGAATCTTGTGCTTCCGGCTCCCGGAGGCAGCACCCGTGCGCGT GTATTTCAGTCAGACGTTTGCAACAGTAGGTGCCGGCGTATTTGTTTTGG TTTTGTTCTTGACTTGGTCGTTGGTTGATATGGCAGGCCATTGACCACAC GCCGCCCTTCGAACACAGAGGCGGGGCAGGATTCGAAGGAGCTTGTATCA CGCCTTGAAGGAGTCAATCCTGACGGTAGGGTAGTCGAGGCTCCATCAGT GTTGCGTGAGACACTGCTGGCGTGCGGAGGAGCTCACGATGATCCATGTG AAAGAGACACGTGAGACATTGGTGTAACTCTTCGTCCCGCTGGGGGTGAT AAACCGAACGGTGATCTATACGAGAACGATAATCTGCGTCATGTCCCAAG GCCATAGGTGCGAGGGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1757:10990..14507-

>mRNA_Ecto-sp13_S_contig1757.5293.1 ID=mRNA_Ecto-sp13_S_contig1757.5293.1|Name=mRNA_Ecto-sp13_S_contig1757.5293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1050bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1757:10990..14507- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCAAGAGAAGGCGAAGCAGCGGCCCTCCTGCCGCTGCCTATCCGGA
GGCAGCAGGAAACTCGTCAACTTCTTTCAGCCAGTCACCGGACCAGCCGC
CAGCAACAGCAGTAGAAGAGGCCACGGACGCGGAAGGCCGACAACGATGC
GAGGGTGTCAAGGAGGAGGAGGAGGAGGGACATGATACACCTGCAGGAGC
CGGGCAGGAAGGCGGCGGGGCAAGCGAAAAGCGAAAGCGAAAACGAACGC
GGACGCGGAAAAAGAAGAAGGGCGGCGGTGGAAGCGGTGAAGGTGCCGAT
GAAGAGGGCGAGGACGCGGCCGGTGGTGGAGGAGGCGGCGGAGTTGCCGG
GGGAGGAGGAGGGGGGGGAACGATGTCGGACACTGTTTACGTCGAGGGCA
TCCCTTGGACCTGCGACGAGATCGACGTCCGCCAGTTCTTCAAGGGCTGC
GGCAAGATCACCGACGTCCGGATGCCGAGGTGGCAGGACTCCGGCCGGCC
CCGCGGCTACGCGCATGTGGCCTTCGCCGGCTCCAGCGGCGCGCGGGCGG
CGTTCGGCCGCGACGGGCAGTACCTCAACGGGCGCTACCTCACGGTGCAG
CAAATGACGGTAGAAAGCAACAACCACGCCGTCCAGGCGCCGCAAGAGCC
CGCGACGGAGAAGGCGAGGCGAGCCAACCGCAAGGCGGAGCAACCGGCGG
GGTGCAGGACGGTCTTTGTGAAGAACTTGCCGTACGACGTGGAAGAGGAC
GCGGTCAGCGAGGCCCTCGCCGGCTGCGGCCGCATCGCCTCCGTGCGCCT
GGCCATGTGGAACCACACTCGCAAGCTCAAGGGGTTCGGGTACGTCGAGT
TTTCGACAGAGAGGGGGGCAGAGACCTGCGTCCGGACGCAGCAGAGCCTG
TCCGTCGGGGGGCGCCCGCTGGTGGTCGACTTTGAGACGGGCGCGCCCAA
GGGCTCCTTCCGGAGGCAGGACGGGGCTCAGATAAAGAAGACGTCGGCCG
ATGCCGGGGTCGGCAAGGGGAAGGCTCCAAAATTTAAGGTTCACGTTTGA
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