mRNA_Ecto-sp13_S_contig1757.5292.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1757.5292.1
Unique NamemRNA_Ecto-sp13_S_contig1757.5292.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1757.5292.1 vs. uniprot
Match: D7FP48_ECTSI (DEAD box helicase similar to CG7922-PA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP48_ECTSI)

HSP 1 Score: 262 bits (670), Expect = 1.870e-77
Identity = 153/160 (95.62%), Postives = 154/160 (96.25%), Query Frame = 3 
Query:    3 ALQRYARVVVVVEGLGEDVGGSXXXXXXXXXXXXXPREAVGKVEALRGASVVACQGWRDAADKVEGLVRREESDGLGLPKVVTGPSLTPAQTKFLSALLRAPTLSYPGGLLMLETFTGRSGKEVVASSARELQASVPGMTAQQAAKLKRFLMSVAFRGRG 482
            ALQRYARVVV VEGLGEDVGGSXXXXXXXXXXXX PREAVGKVEALRGASVVACQGWRDAADKVEGLVRREE+DG GLPKVVTGPSLTPAQTKFLSALLRAPTLSYPGGLLMLE F GRSGKEVVASSARELQASVPGMTAQQAAKLKRFLMS AFRGRG
Sbjct: 2496 ALQRYARVVVAVEGLGEDVGGSXXXXXXXXXXXX-PREAVGKVEALRGASVVACQGWRDAADKVEGLVRREENDGFGLPKVVTGPSLTPAQTKFLSALLRAPTLSYPGGLLMLEAFRGRSGKEVVASSARELQASVPGMTAQQAAKLKRFLMSTAFRGRG 2654
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BLAST of mRNA_Ecto-sp13_S_contig1757.5292.1 vs. uniprot
Match: A0A6H5KRV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV1_9PHAE)

HSP 1 Score: 261 bits (666), Expect = 6.400e-77
Identity = 153/160 (95.62%), Postives = 154/160 (96.25%), Query Frame = 3 
Query:    3 ALQRYARVVVVVEGLGEDVGGSXXXXXXXXXXXXXPREAVGKVEALRGASVVACQGWRDAADKVEGLVRREESDGLGLPKVVTGPSLTPAQTKFLSALLRAPTLSYPGGLLMLETFTGRSGKEVVASSARELQASVPGMTAQQAAKLKRFLMSVAFRGRG 482
            ALQRYARVVVVVEGLGEDVG   XXXXXXXXXXXXPREAVGKVEALRGASVVAC+GWRDAADKVEGLVRREESDGLGLPKVVTGPSLTPAQTKFLSALLRAPTLSYPGGLLMLE F GRSGKEVVASSARELQASVPGMTAQQAAKLKRFLMS AFRGRG
Sbjct: 2277 ALQRYARVVVVVEGLGEDVG---XXXXXXXXXXXXPREAVGKVEALRGASVVACRGWRDAADKVEGLVRREESDGLGLPKVVTGPSLTPAQTKFLSALLRAPTLSYPGGLLMLEAFRGRSGKEVVASSARELQASVPGMTAQQAAKLKRFLMSAAFRGRG 2433
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1757.5292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FP48_ECTSI1.870e-7795.63DEAD box helicase similar to CG7922-PA n=1 Tax=Ect... [more]
A0A6H5KRV1_9PHAE6.400e-7795.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1757contigEcto-sp13_S_contig1757:8907..10520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score87.4
Seed ortholog evalue2e-15
Seed eggNOG ortholog2880.D7FP48
Preferred nameFANCM
Model size616
KEGG koko:K10896
KEGG Pathwayko03460,map03460
KEGG ModuleM00413
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000018,GO:0000019,GO:0000280,GO:0000712,GO:0000724,GO:0000725,GO:0003674,GO:0003678,GO:0003682,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010605,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0031297,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0035825,GO:0036297,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043240,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045003,GO:0045005,GO:0045132,GO:0045910,GO:0045934,GO:0045950,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0060255,GO:0061982,GO:0065007,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071821,GO:0071840,GO:0080090,GO:0090304,GO:0098813,GO:0140013,GO:0140097,GO:1901360,GO:1901576,GO:1903046
Exons3
EggNOG free text desc.helicase activity
EggNOG OGsCOG1111@1,COG5141@1,KOG0354@2759,KOG0955@2759
Cds size150
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462913.649023-UTR-Ecto-sp13_S_contig1757:8906..91511681462913.649023-UTR-Ecto-sp13_S_contig1757:8906..9151Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1757 8907..9151 +
1681462913.6618001-UTR-Ecto-sp13_S_contig1757:9670..97601681462913.6618001-UTR-Ecto-sp13_S_contig1757:9670..9760Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1757 9671..9760 +
1681462913.6972-UTR-Ecto-sp13_S_contig1757:10389..105201681462913.6972-UTR-Ecto-sp13_S_contig1757:10389..10520Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1757 10390..10520 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462913.6718469-CDS-Ecto-sp13_S_contig1757:9760..98071681462913.6718469-CDS-Ecto-sp13_S_contig1757:9760..9807Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1757 9761..9807 +
1681462913.6844583-CDS-Ecto-sp13_S_contig1757:10286..103891681462913.6844583-CDS-Ecto-sp13_S_contig1757:10286..10389Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1757 10287..10389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1757.5292.1prot_Ecto-sp13_S_contig1757.5292.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1757 9761..10389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1757.5292.1

>prot_Ecto-sp13_S_contig1757.5292.1 ID=prot_Ecto-sp13_S_contig1757.5292.1|Name=mRNA_Ecto-sp13_S_contig1757.5292.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
MLETFTGRSGKEVVASSARELQASVPGMTAQQAAKLKRFLMSVAFRGRG*
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mRNA from alignment at Ecto-sp13_S_contig1757:8907..10520+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1757.5292.1 ID=mRNA_Ecto-sp13_S_contig1757.5292.1|Name=mRNA_Ecto-sp13_S_contig1757.5292.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1614bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1757:8907..10520+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGCCCTCCAGCGGTACGCGCGCGTGGTGGTGGTGGTGGAAGGGCTGGGG
GAAGACGTGGGCGGTAGCGGTGGTGGTGGTGGTGGTGGTGCTGCTGGCGG
GGGGGGACCCCGAGAAGCCGTCGGGAAAGTCGAGGCCCTGCGCGGCGCGA
GCGTTGTCGCCTGCCAGGGGTGGAGGGACGCGGCGGATAAGGTGGAGGGC
CTGGTTCGGCGAGAAGAGAGCGACGGACTCGGGCTGCCGAAGGTGGTGAG
TGGAGGGAAGCCTCTTCGATTTCTGCTCCTTGCGTTCGCAGCGAGTGTTT
CGGGGAAAAGAAAAAAGGGCCGGTCTTGGTTCGGTCGAACTGGGGCGGGA
ACGAGGAGAAGGAACAGAAGGGAAGGGATTTGTCCTATGGAGTGCGTGTT
TCGTCGTTGGTCGGGGGGTGCCGTTTCTCATCGAACCGCTACAACATGCA
GTATGTGATAATCGGCGCTGCTAGATAATGCTGCGAGGAACAGGGATGTT
GGCACTGAAGCTGGACTTTCTCCCGCTGAGGTTTTGGTCGTATCAAAACA
TTGTCGTGGCACGGTCAACGCACGACCGTGCACGAAACACATCAGGCGAG
GGAGTGGCGCGCCAGGCCCTCTTTCGTGCGATAGAACTACCGTATTGAGA
ATCGAGATCCGTCCAGGAGGGGATAGGAAAGCGGTCCAAATGTGCTTGGA
AAAAATGTCCCGTTCCTTCCGCCATGATCAACCTTTCTCTTGCTCGCTCG
ATCCCCCTACGCAGGTCACGGGACCGTCGCTCACGCCCGCCCAGACCAAG
TTCCTGTCGGCGCTGCTGCGAGCGCCGACGTTGTCGTACCCTGGGGGACT
CTTGATGCTTGAGACCTTCACGGGCCGGTCCGGAAAAGAAGTCGTCGCAA
GGTGAAGTGTCGGCTGTGTACTTCGAAGTATGTACTTAAGTGGTCCTCGT
CGTGAACGGTGTGGTCGAGGTCGGCGAGAAGGCTGTTTCTTTGACCGGTG
GTGTTGTGCTTCGTTGCGCTTCGCCGCCCTCGCGCGCTCGTTTGTGTTGT
TGTAGGTCAGGGAGAAAATAATAGAGTGTATTCTGTTTTTGAGCCCTGTG
TTTGTGTGTGTTTTGGGAGGTGTGTATCAACGTGCCCGCGATTTTGCCAA
GTATTTGGAATGATTTTGGGGGGGCTCGAGCCTGCTTGCCGTCACGTACC
TTGAATGTGTTGCTGCTTGCTTCATGAGCACCATCCGACCAAGGTGCAGC
ATGTAAAACCGACGCAACCGTTCTCTCTCACCGAATGCCTGCTGAACTCC
GTACCATCCACCACCCCACTTCACCGCCCCGTCATCGCTTCCTCCGTACC
GGGATGTTGTTCTTTCTGTTGGATTTCCAGTTCTGCAAGGGAGCTTCAGG
CCTCGGTTCCGGGCATGACGGCGCAACAGGCGGCCAAACTTAAGCGCTTT
CTGATGAGCGTTGCCTTCAGGGGGCGGGGGTAGAAATGACGCTGCTCGGA
TTTCGTGTGTCTGCGTGCTAATTTTTTACAAAGGTTCGAACTGCTGTAGA
AGGCGGAATTGTGATTGTTGAATCAAGGCAACGGTATGCTGGAGCGTGCT
GGGGAGCAAGAGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1757:8907..10520+

>mRNA_Ecto-sp13_S_contig1757.5292.1 ID=mRNA_Ecto-sp13_S_contig1757.5292.1|Name=mRNA_Ecto-sp13_S_contig1757.5292.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1757:8907..10520+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTGAGACCTTCACGGGCCGGTCCGGAAAAGAAGTCGTCGCAAGTTC
TGCAAGGGAGCTTCAGGCCTCGGTTCCGGGCATGACGGCGCAACAGGCGG
CCAAACTTAAGCGCTTTCTGATGAGCGTTGCCTTCAGGGGGCGGGGGTAG
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