mRNA_Ecto-sp13_S_contig17547.5284.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17547.5284.1
Unique NamemRNA_Ecto-sp13_S_contig17547.5284.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17547.5284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17547contigEcto-sp13_S_contig17547:1..3654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size3459
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionbeta strand repeat-containing protein
Ec32 orthologEc-17_004040.1
Cds size3300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462912.9907553-UTR-Ecto-sp13_S_contig17547:0..1591681462912.9907553-UTR-Ecto-sp13_S_contig17547:0..159Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17547 1..159 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462912.9998186-CDS-Ecto-sp13_S_contig17547:159..22591681462912.9998186-CDS-Ecto-sp13_S_contig17547:159..2259Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17547 160..2259 +
1681462913.008729-CDS-Ecto-sp13_S_contig17547:2454..36541681462913.008729-CDS-Ecto-sp13_S_contig17547:2454..3654Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17547 2455..3654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17547.5284.1prot_Ecto-sp13_S_contig17547.5284.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17547 160..3654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17547.5284.1

>prot_Ecto-sp13_S_contig17547.5284.1 ID=prot_Ecto-sp13_S_contig17547.5284.1|Name=mRNA_Ecto-sp13_S_contig17547.5284.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1100bp
MASVTAKPSLDPTASQVVSPMLGPTYIVETPGPVPPVTAEPSLDPTPSQV
VVPSRGPTFVIKTPGPVLRLTAKPSLDPTPSPAIAPTRGPTSLPIETPGP
IPPVTAEPSLDPTPSEVVLPSPGPTSLPVDTPGPVLPLTTEPSLDPTQSL
LIAPTLGPTSSQVVVPSPGPTSLPIVTPGPILSLTTEPSVDPTLLPVTGP
TSDPTPVIETRRPVLPVTAEPSLDPPPSQVVLPSPGPTSLPVDSPEPVLP
LTTEPSLDSTPSPVIAPTPGPTSPPIATPAPVSVVTAEPSPDPALLPVVV
PTPGPTSVVQTRGPVLPLATEPFLNPTQSPVVTPTPGPTSIVKTLGPLSS
VTTEPVLDPTPSSVIAPTPDPISPPVETPGPVPPVTAEPALDPTPSPVLA
PTADPTSIAETPGPVPPVTAEPALDPTPSPVVAPTSDPTLPPFETPGPVP
PVIAEPSLDPTPSPFVAPTLDPASAVETPGPVPPMTAELNPTPSPVVAPA
PDLISPPVETPGPVHSVTAKPSLYPTPSSVESPAPNPTSPPVETLGPSPP
VIAQPSLSLTPSPVVAQTPDPTSLTVETFGPVPPVTTEPSLDPTPSPAVT
PTVTPTSPLVETPGPVTPVTIKPSLDLTPPPVVGPTMNPTSPSVETTGPV
PPVAAEPSLDPTPSPAMTPTLDPTSPPVQTPGPFSPVTAEPSLDPTASQV
VVTPTTDPISIAGTPGPVPSVTAEPSLDLTPSPVIAPTLDTASPPVETQG
PVPPVTAEPSPVVPQTPGPTRPLAETPEPVPPVTAEPSLDPTVLPVVAPT
SDPISPPVETPGPQPPVTAEPSLDPTALPVVVPTPDPTSFVQTPGPVPAV
TVKPSLYLTPSQVVFPTPGPTAIVQTPGPVLPLTAQPSLDPTPSPVVTPT
PGPTSPVETPGPVPAVTIEPALDPTPSPVIAPTPDETSSPLETPGPIPSV
TVEPSLDSTPSPGIEPTPDPTEATPEPTSSVETSPTVSPVTIEPSVDPTP
SPVTAPTPNPTPPSAETPAPVPPVTAEPSLDPTPSPVTAPTPEPVSPPVE
TPAPVPPVTAEPSLDPTPSPVTAPTPDPVSPPVETPAPVPPVTAEPSLDP
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mRNA from alignment at Ecto-sp13_S_contig17547:1..3654+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17547.5284.1 ID=mRNA_Ecto-sp13_S_contig17547.5284.1|Name=mRNA_Ecto-sp13_S_contig17547.5284.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3654bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17547:1..3654+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGTCGCCCGCCGTAGCTCCGACTTCTGATCCAACATTTCCCGTAGAGAA
ATCGAATACTGTACCTTCGGTCACAGCAGAACCATCGGTTGAGCCCCCGT
CCCCTATCGTAGGACCGACCATTGACTGAACGACTCCTCCGGTAGAGATA
CCGGTACCTATGGCTTCCGTAACAGCAAAACCATCACTCGACCCAACCGC
TTCGCAGGTGGTGTCGCCGATGCTGGGTCCAACATATATCGTAGAGACAC
CAGGACCTGTACCTCCAGTGACGGCAGAACCATCTCTTGACCCAACCCCT
TCGCAGGTAGTCGTACCATCACGTGGTCCAACCTTCGTGATAAAGACACC
GGGGCCTGTACTTCGGCTGACGGCAAAACCATCTCTCGACCCAACCCCGT
CACCTGCCATAGCACCGACTCGTGGTCCGACGTCTCTTCCCATTGAGACA
CCAGGCCCTATACCTCCAGTGACGGCGGAACCATCGCTTGACCCAACCCC
TTCGGAGGTGGTCTTACCATCACCTGGTCCAACGTCTCTTCCGGTAGACA
CACCGGGACCCGTACTTCCGCTGACGACAGAACCATCTCTTGACCCAACC
CAGTCGCTTCTCATAGCACCAACTCTGGGTCCAACGTCTTCGCAGGTGGT
CGTACCATCACCTGGTCCAACATCTCTTCCCATAGTCACACCGGGACCTA
TACTTTCGCTGACGACAGAACCATCTGTGGACCCAACCCTTTTGCCCGTG
ACGGGACCGACTTCCGATCCAACACCTGTCATAGAGACACGACGCCCTGT
ACTTCCAGTGACGGCGGAACCATCGCTTGACCCACCCCCTTCCCAGGTGG
TCTTACCATCACCTGGTCCAACCTCTCTTCCCGTAGACTCACCGGAACCT
GTACTTCCGCTGACAACTGAACCATCTCTAGACTCAACCCCGTCGCCTGT
CATAGCACCGACTCCTGGTCCGACGTCTCCTCCCATTGCCACGCCAGCAC
CTGTCTCTGTAGTGACGGCAGAACCATCGCCTGACCCAGCCCTTTTGCCC
GTGGTCGTACCAACACCTGGTCCAACATCTGTCGTACAAACACGGGGACC
TGTACTTCCGCTTGCAACAGAACCTTTTCTCAACCCAACCCAGTCGCCCG
TCGTCACACCGACTCCGGGTCCGACATCTATCGTAAAGACATTGGGGCCC
CTGTCTTCCGTCACGACAGAACCCGTGCTTGATCCGACTCCGTCATCTGT
GATAGCACCGACTCCGGATCCAATATCTCCGCCCGTTGAGACACCAGGAC
CCGTCCCTCCGGTCACTGCAGAACCTGCGCTTGACCCAACCCCGTCGCCC
GTCTTGGCACCGACTGCTGATCCCACATCCATAGCAGAGACACCAGGACC
CGTCCCTCCGGTAACTGCAGAACCTGCGCTTGACCCAACCCCGTCCCCAG
TCGTAGCCCCTACTTCGGATCCAACCCTTCCGCCGTTTGAGACACCAGGA
CCCGTCCCTCCGGTCATCGCGGAACCATCGCTTGACCCAACCCCGTCGCC
ATTCGTAGCTCCGACGCTGGATCCAGCTTCTGCCGTAGAGACACCGGGGC
CTGTCCCTCCAATGACGGCAGAGCTCAACCCAACCCCGTCGCCAGTCGTA
GCTCCTGCTCCAGATCTAATATCTCCTCCGGTAGAGACACCTGGACCTGT
GCATTCGGTCACAGCAAAACCATCGCTTTACCCAACCCCGTCGTCAGTAG
AATCTCCGGCTCCGAACCCAACATCTCCCCCGGTAGAGACACTTGGGCCT
TCACCTCCGGTGATTGCACAACCATCGCTAAGCCTAACCCCGTCACCGGT
AGTAGCACAGACTCCGGATCCAACATCTCTTACGGTAGAGACCTTTGGAC
CTGTGCCTCCGGTCACTACAGAACCATCGCTGGACCCCACCCCGTCGCCT
GCCGTAACTCCAACCGTAACTCCAACATCTCCCTTGGTGGAGACACCTGG
GCCTGTAACGCCGGTCACTATAAAACCGTCGCTGGACCTTACACCGCCGC
CTGTCGTAGGTCCAACCATGAATCCAACATCTCCATCGGTAGAGACAACT
GGACCCGTGCCGCCAGTCGCTGCAGAACCGTCCCTTGACCCAACCCCGTC
GCCTGCCATGACACCTACTCTGGATCCAACATCTCCGCCTGTACAGACAC
CAGGACCATTTTCTCCAGTGACGGCAGAACCATCGCTTGACCCAACCGCT
TCGCAGGTGGTGTCACCAACACCTGGTCCAACATCTATCGTACAAATACT
GGGACCTGTACTTCCGCTGACGACAGAACCATCTCTCGACCAAACCTCGT
CGCCTGTCATAGCACCCACTCCGGGTCCAACATCTTCCGTAGACACAACA
GGACCTGTGCCTCCGGTGACGGCAGAACCATCGCTTGACCCAACCCCGTC
GCAGGTCGTAACACCGACTACTGATCCAATATCTATCGCGGGGACACCCG
GACCTGTACCTTCAGTCACGGCAGAACCATCCCTTGACTTGACTCCGTCG
CCTGTCATAGCCCCAACTCTGGATACAGCATCTCCCCCTGTTGAGACACA
AGGACCTGTGCCTCCGGTCACCGCAGAACCGTCGCCGGTCGTTCCTCAGA
CTCCTGGTCCGACGCGTCCGCTCGCGGAGACACCTGAACCCGTTCCTCCT
GTCACGGCAGAACCATCGCTCGACCCAACCGTTTTGCCCGTGGTAGCACC
GACTTCTGATCCAATTTCTCCTCCGGTGGAGACACCTGGACCTCAGCCCC
CAGTGACGGCAGAACCATCGCTTGACCCAACCGCTTTGCCCGTAGTAGTA
CCGACTCCTGATCCAACATCATTCGTACAAACCCCTGGCCCTGTACCTGC
AGTGACGGTAAAACCATCGCTTTACCTGACCCCTTCGCAGGTGGTGTTTC
CGACACCTGGTCCAACAGCCATCGTACAAACACCGGGACCTGTACTTCCC
CTGACGGCCCAACCATCTCTCGATCCAACCCCGTCGCCAGTCGTAACGCC
GACTCCGGGTCCTACATCTCCCGTTGAGACGCCCGGACCCGTGCCTGCGG
TCACAATAGAACCAGCGCTTGACCCCACCCCGTCGCCTGTGATAGCACCG
ACTCCGGATGAAACCTCTTCTCCCCTCGAGACACCGGGACCTATACCTTC
CGTGACCGTGGAACCGTCGCTTGATTCAACCCCATCACCTGGCATTGAAC
CGACTCCGGATCCAACTGAAGCGACTCCGGAACCAACGTCTTCCGTGGAG
ACATCACCGACCGTTTCTCCGGTCACAATAGAACCATCGGTCGACCCCAC
CCCATCGCCGGTCACAGCACCGACTCCAAATCCAACACCTCCTTCAGCAG
AGACACCAGCGCCTGTGCCGCCGGTCACGGCAGAACCATCGCTGGACCCC
ACCCCGTCGCCTGTCACAGCACCGACTCCGGAACCAGTATCTCCTCCGGT
AGAGACACCAGCGCCTGTGCCTCCGGTGACTGCAGAACCATCGCTGGACC
CCACCCCGTCGCCTGTCACAGCACCGACTCCGGATCCAGTATCTCCTCCG
GTAGAGACACCAGCGCCTGTGCCTCCGGTGACTGCAGAACCATCGCTGGA
CCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17547:1..3654+

>mRNA_Ecto-sp13_S_contig17547.5284.1 ID=mRNA_Ecto-sp13_S_contig17547.5284.1|Name=mRNA_Ecto-sp13_S_contig17547.5284.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=3300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17547:1..3654+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTTCCGTAACAGCAAAACCATCACTCGACCCAACCGCTTCGCAGGT
GGTGTCGCCGATGCTGGGTCCAACATATATCGTAGAGACACCAGGACCTG
TACCTCCAGTGACGGCAGAACCATCTCTTGACCCAACCCCTTCGCAGGTA
GTCGTACCATCACGTGGTCCAACCTTCGTGATAAAGACACCGGGGCCTGT
ACTTCGGCTGACGGCAAAACCATCTCTCGACCCAACCCCGTCACCTGCCA
TAGCACCGACTCGTGGTCCGACGTCTCTTCCCATTGAGACACCAGGCCCT
ATACCTCCAGTGACGGCGGAACCATCGCTTGACCCAACCCCTTCGGAGGT
GGTCTTACCATCACCTGGTCCAACGTCTCTTCCGGTAGACACACCGGGAC
CCGTACTTCCGCTGACGACAGAACCATCTCTTGACCCAACCCAGTCGCTT
CTCATAGCACCAACTCTGGGTCCAACGTCTTCGCAGGTGGTCGTACCATC
ACCTGGTCCAACATCTCTTCCCATAGTCACACCGGGACCTATACTTTCGC
TGACGACAGAACCATCTGTGGACCCAACCCTTTTGCCCGTGACGGGACCG
ACTTCCGATCCAACACCTGTCATAGAGACACGACGCCCTGTACTTCCAGT
GACGGCGGAACCATCGCTTGACCCACCCCCTTCCCAGGTGGTCTTACCAT
CACCTGGTCCAACCTCTCTTCCCGTAGACTCACCGGAACCTGTACTTCCG
CTGACAACTGAACCATCTCTAGACTCAACCCCGTCGCCTGTCATAGCACC
GACTCCTGGTCCGACGTCTCCTCCCATTGCCACGCCAGCACCTGTCTCTG
TAGTGACGGCAGAACCATCGCCTGACCCAGCCCTTTTGCCCGTGGTCGTA
CCAACACCTGGTCCAACATCTGTCGTACAAACACGGGGACCTGTACTTCC
GCTTGCAACAGAACCTTTTCTCAACCCAACCCAGTCGCCCGTCGTCACAC
CGACTCCGGGTCCGACATCTATCGTAAAGACATTGGGGCCCCTGTCTTCC
GTCACGACAGAACCCGTGCTTGATCCGACTCCGTCATCTGTGATAGCACC
GACTCCGGATCCAATATCTCCGCCCGTTGAGACACCAGGACCCGTCCCTC
CGGTCACTGCAGAACCTGCGCTTGACCCAACCCCGTCGCCCGTCTTGGCA
CCGACTGCTGATCCCACATCCATAGCAGAGACACCAGGACCCGTCCCTCC
GGTAACTGCAGAACCTGCGCTTGACCCAACCCCGTCCCCAGTCGTAGCCC
CTACTTCGGATCCAACCCTTCCGCCGTTTGAGACACCAGGACCCGTCCCT
CCGGTCATCGCGGAACCATCGCTTGACCCAACCCCGTCGCCATTCGTAGC
TCCGACGCTGGATCCAGCTTCTGCCGTAGAGACACCGGGGCCTGTCCCTC
CAATGACGGCAGAGCTCAACCCAACCCCGTCGCCAGTCGTAGCTCCTGCT
CCAGATCTAATATCTCCTCCGGTAGAGACACCTGGACCTGTGCATTCGGT
CACAGCAAAACCATCGCTTTACCCAACCCCGTCGTCAGTAGAATCTCCGG
CTCCGAACCCAACATCTCCCCCGGTAGAGACACTTGGGCCTTCACCTCCG
GTGATTGCACAACCATCGCTAAGCCTAACCCCGTCACCGGTAGTAGCACA
GACTCCGGATCCAACATCTCTTACGGTAGAGACCTTTGGACCTGTGCCTC
CGGTCACTACAGAACCATCGCTGGACCCCACCCCGTCGCCTGCCGTAACT
CCAACCGTAACTCCAACATCTCCCTTGGTGGAGACACCTGGGCCTGTAAC
GCCGGTCACTATAAAACCGTCGCTGGACCTTACACCGCCGCCTGTCGTAG
GTCCAACCATGAATCCAACATCTCCATCGGTAGAGACAACTGGACCCGTG
CCGCCAGTCGCTGCAGAACCGTCCCTTGACCCAACCCCGTCGCCTGCCAT
GACACCTACTCTGGATCCAACATCTCCGCCTGTACAGACACCAGGACCAT
TTTCTCCAGTGACGGCAGAACCATCGCTTGACCCAACCGCTTCGCAGGTG
GTCGTAACACCGACTACTGATCCAATATCTATCGCGGGGACACCCGGACC
TGTACCTTCAGTCACGGCAGAACCATCCCTTGACTTGACTCCGTCGCCTG
TCATAGCCCCAACTCTGGATACAGCATCTCCCCCTGTTGAGACACAAGGA
CCTGTGCCTCCGGTCACCGCAGAACCGTCGCCGGTCGTTCCTCAGACTCC
TGGTCCGACGCGTCCGCTCGCGGAGACACCTGAACCCGTTCCTCCTGTCA
CGGCAGAACCATCGCTCGACCCAACCGTTTTGCCCGTGGTAGCACCGACT
TCTGATCCAATTTCTCCTCCGGTGGAGACACCTGGACCTCAGCCCCCAGT
GACGGCAGAACCATCGCTTGACCCAACCGCTTTGCCCGTAGTAGTACCGA
CTCCTGATCCAACATCATTCGTACAAACCCCTGGCCCTGTACCTGCAGTG
ACGGTAAAACCATCGCTTTACCTGACCCCTTCGCAGGTGGTGTTTCCGAC
ACCTGGTCCAACAGCCATCGTACAAACACCGGGACCTGTACTTCCCCTGA
CGGCCCAACCATCTCTCGATCCAACCCCGTCGCCAGTCGTAACGCCGACT
CCGGGTCCTACATCTCCCGTTGAGACGCCCGGACCCGTGCCTGCGGTCAC
AATAGAACCAGCGCTTGACCCCACCCCGTCGCCTGTGATAGCACCGACTC
CGGATGAAACCTCTTCTCCCCTCGAGACACCGGGACCTATACCTTCCGTG
ACCGTGGAACCGTCGCTTGATTCAACCCCATCACCTGGCATTGAACCGAC
TCCGGATCCAACTGAAGCGACTCCGGAACCAACGTCTTCCGTGGAGACAT
CACCGACCGTTTCTCCGGTCACAATAGAACCATCGGTCGACCCCACCCCA
TCGCCGGTCACAGCACCGACTCCAAATCCAACACCTCCTTCAGCAGAGAC
ACCAGCGCCTGTGCCGCCGGTCACGGCAGAACCATCGCTGGACCCCACCC
CGTCGCCTGTCACAGCACCGACTCCGGAACCAGTATCTCCTCCGGTAGAG
ACACCAGCGCCTGTGCCTCCGGTGACTGCAGAACCATCGCTGGACCCCAC
CCCGTCGCCTGTCACAGCACCGACTCCGGATCCAGTATCTCCTCCGGTAG
AGACACCAGCGCCTGTGCCTCCGGTGACTGCAGAACCATCGCTGGACCCC
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