mRNA_Ecto-sp13_S_contig17521.5270.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17521.5270.1 vs. uniprot
Match: D7G3P1_ECTSI (Similar to Mucin-1 (MUC-1) (Polymorphic epithelial mucin) (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P1_ECTSI) HSP 1 Score: 467 bits (1202), Expect = 1.470e-154 Identity = 232/235 (98.72%), Postives = 233/235 (99.15%), Query Frame = 1
Query: 1 IVFPVLMFIYVSRIVWSRVRPDNSPLRYEPNPNAGKGCFLFKACGGFCKAWTSGSSMFEWADKGQWASKNNEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADAITLGLMFYATFLEPDDDDDADRLELVYAGALSVQTLAILFFVIPLYLDAFITIVGALCKKCSRLAKGTTSKFKA 705
IVFPVLMFIYVSRIVWSRVRPDNSPLRYEPNPNAGKGCFLFKACGGFCKAWTSGSSMFEWADKGQWASKNNEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADAITLGLMFYATFLEPDDDDDADRLELVYAGAL VQTLAILFFVIPLYLDAFITIVG LCKKCS+LAKGTTSKFKA
Sbjct: 722 IVFPVLMFIYVSRIVWSRVRPDNSPLRYEPNPNAGKGCFLFKACGGFCKAWTSGSSMFEWADKGQWASKNNEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADAITLGLMFYATFLEPDDDDDADRLELVYAGALLVQTLAILFFVIPLYLDAFITIVGTLCKKCSQLAKGTTSKFKA 956
BLAST of mRNA_Ecto-sp13_S_contig17521.5270.1 vs. uniprot
Match: A0A6H5LAH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAH5_9PHAE) HSP 1 Score: 451 bits (1161), Expect = 7.320e-146 Identity = 231/270 (85.56%), Postives = 235/270 (87.04%), Query Frame = 1
Query: 1 IVFPVLMFIYVSRIVWSRVRPDNSPLRYEPNPNAGKGCFLFKACGGFCKAWTSGSSMFEWADKGQWASKNNEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADAITLGLMFYATFLEPDDDDDADRLELVYAGALSVQ----------------------------------TLAILFFVIPLYLDAFITIVGALCKKCSRLAKGTTSKFKAR 708
IVFPVLMFIYVSRIVWSRVRPDNSPLRYEPNPNAGKGCFLFKACGGFCKAWTSGSSMFEWA+KGQWASKNNEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEW+SFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLAD ITLGLMFYATFLEPDDDDDADRLELVYAGALSVQ TLAILFFVIPLYLDAFITI+GALCKKCS+LAKGTTSKFKAR
Sbjct: 1045 IVFPVLMFIYVSRIVWSRVRPDNSPLRYEPNPNAGKGCFLFKACGGFCKAWTSGSSMFEWAEKGQWASKNNEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWMSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADTITLGLMFYATFLEPDDDDDADRLELVYAGALSVQAWFRVVCDFLDASPPARPPVLLVAGAVSLPTSAQTLAILFFVIPLYLDAFITIIGALCKKCSQLAKGTTSKFKAR 1314
BLAST of mRNA_Ecto-sp13_S_contig17521.5270.1 vs. uniprot
Match: A0A6H5JTC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC8_9PHAE) HSP 1 Score: 227 bits (579), Expect = 4.450e-68 Identity = 112/245 (45.71%), Postives = 159/245 (64.90%), Query Frame = 1
Query: 28 YVSRIVWSRVRPDNSPLRYEPN--PNAGKG---------CFLFKACGGFCKAWTSGSSMFEWADKGQWASKNNEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADAITLGLMFYATFLEPDDDDDADRLELVYAGALSVQTLAILFFVIPLYLDAFITIVGALCKKCSRLAKGTTSKFKARCIKRGLW 729
YV RIVWSRV+P P+ ++ P G G C+ C GF W +G S+FEWADKG W S +E VDLDSRKFRIGFEPLFVD+T++G +Y+ FL+F+W + +IAG VTNGT+QT ++ IY++D +L L+PFSNS++Q T+ V ADA+TL LM +A+ L+PD+D D +L+ +YAG + VQTL I+ IP+Y D F+ + + +K S+L +G + + +G W
Sbjct: 3 YVGRIVWSRVKPQEGPVTFDKGLAPAGGDGXXXXXGRKRCWCVLLCKGFRDGWRNGHSVFEWADKGAWVSLKDEKVDLDSRKFRIGFEPLFVDFTKEGAVYIIFLIFKWFALAVIAGLVTNGTVQTASLAVIYLVDVALLCMLRPFSNSVVQWVETLLVTADALTLALMVWASALDPDEDGDKRKLDNIYAGCMLVQTLGIILLTIPIYADTFVVLFSQIRQKASKLWRGERTPRAEKSDIKGSW 247
BLAST of mRNA_Ecto-sp13_S_contig17521.5270.1 vs. uniprot
Match: D8LIK9_ECTSI (Beta strand repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK9_ECTSI) HSP 1 Score: 236 bits (601), Expect = 1.510e-67 Identity = 116/245 (47.35%), Postives = 163/245 (66.53%), Query Frame = 1
Query: 4 VFPVLMFIYVSRIVWSRVRPDNSPLRYEPN--PNAG-KGCFLFKACGGFCKAWTSGSSMFEWADKGQWASKNNEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADAITLGLMFYATFLEPDDDDDADRLELVYAGALSVQTLAILFFVIPLYLDAFITIVGALCKKCSRLAKGTTSKFKARCIKRGLW 729
+FP+ + YV RIVWSRV+P P+ + P G K C+ C GF W +G S+FEWADKG W S +E VDL+SRKFRIGFEPLFVD+T++G +Y+ FLLF+W + G+IAG VTNGT+QT ++ IY++D +L L+PFSNS++Q T+ V ADA+TLG+M +A+ L+PD D D +L+ +YAG + +QTL I IP+Y D FI I + K S+L +G + + + +G W
Sbjct: 1177 IFPIFLMFYVGRIVWSRVKPQEGPVTFTKGLAPEEGRKRCWCVSLCRGFRDGWRNGHSIFEWADKGAWVSLKDEKVDLESRKFRIGFEPLFVDFTKEGAVYIIFLLFKWFALGIIAGLVTNGTVQTASLAVIYLVDIALLCKLRPFSNSVVQWVETVLVTADALTLGMMVWASVLDPDMDADKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVIFFQIRHKASKLWRGERTPREQKSDIKGSW 1421
BLAST of mRNA_Ecto-sp13_S_contig17521.5270.1 vs. uniprot
Match: A0A6H5JD90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD90_9PHAE) HSP 1 Score: 131 bits (329), Expect = 4.370e-31 Identity = 91/242 (37.60%), Postives = 129/242 (53.31%), Query Frame = 1
Query: 1 IVFPVLMFIYVSRIVWSRVRPDNSPL--RYEPN------PNAGKGCFLFKACGGFCKAWTSGSSMFEWADKGQWASKN--NEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADAITLGLMFYATFLEPDDDDDADRLELVYAGALSVQTLAILFFVIPLYLDAFITIVGALCKKCSRLAKGTTSK 696
+++P+LMF V R ++ RVRPD + Y+ + PN G+G FL + F +W S+F WADKGQW + N ++ + FRIGFEP+FVDYT++GT ++ L EW S L+ + N +Q C + FLILVCLKPF+NS+I V DA+ GL+ A D V G L + +L L VIP+YLDA ++GA+ K+ R A G T +
Sbjct: 1658 VLYPLLMFATVVRTLFVRVRPDELLIFKTYDEDGTNGNTPN-GRGGFLSR----FKSSWAENYSLFSWADKGQWETVQTPNRNITREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWASIALVGVMIDNSYVQLLLFCGLQSAMFLILVCLKPFANSVINGIGACIVAIDAVCTGLLAVAALKWEGTSRATDVNSAV--GVLQIVSLCAL--VIPVYLDAVTIVMGAIRKRI-RKALGKTGQ 1889
BLAST of mRNA_Ecto-sp13_S_contig17521.5270.1 vs. uniprot
Match: D8LLG6_ECTSI (Mucin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG6_ECTSI) HSP 1 Score: 128 bits (321), Expect = 5.100e-30 Identity = 88/241 (36.51%), Postives = 126/241 (52.28%), Query Frame = 1
Query: 1 IVFPVLMFIYVSRIVWSRVRPDNSPL--RYEPNPNAG-----KGCFLFKACGGFCKAWTSGSSMFEWADKGQWASKN--NEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADAITLGLMFYATFLEPDDDDDADRLELVYAGALSVQTLAILFFVIPLYLDAFITIVGALCKKCSRLAKGTTSK 696
+++P+LMF V R ++ RVRPD + Y+ + G +G FL F +W S+F WADKGQW + N ++ + FRIGFEP+FVDYT++GT ++ L EW S L+ + N +Q C + FLILVCLKPF+NS+I V DA++ GL+ A D V G L + +L L VIP+YLDA ++GA+ + R A G T +
Sbjct: 1617 VLYPLLMFATVVRTLFVRVRPDELLIFKTYDEDGTNGNAPNCRGGFLSH----FKSSWAENYSLFSWADKGQWETVQTPNRNITREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWASIALVGVMIDNSNVQLLLFCGLQSAMFLILVCLKPFANSVINGIGACIVAIDAVSTGLLAVAALKWEGTSRATDVNSAV--GVLQIVSLCAL--VIPVYLDAVTIVMGAIRNRI-RKALGKTGQ 1848
BLAST of mRNA_Ecto-sp13_S_contig17521.5270.1 vs. uniprot
Match: D7FWS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS4_ECTSI) HSP 1 Score: 122 bits (307), Expect = 3.580e-28 Identity = 79/224 (35.27%), Postives = 120/224 (53.57%), Query Frame = 1
Query: 1 IVFPVLMFIYVSRIVWSRVRPDNSPLRYEPNPNAGKGCFLFKACGG----FCKAWTSGSSMFEWADKGQWASKNNED--VDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADAITLGLMFYATFLEPDDDDDADRLELVYAGALSVQTLAILFFVIPLYLDAFITIVGAL 654
+++P+LMF+ V R + RVRP N L ++ G GG F +W S+F WADKGQW + D V + FRIGFEP+FVDYT++GT ++ L EW +F + + N +Q C ++ + F IL+ LKPF+NS+I DAI++G+ F A+ L + + A L + +Q L++ VIP+YLDA ++GA+
Sbjct: 1436 VLYPLLMFVTVFRTLLVRVRP-NVLLIFKTYAEDGTNGDAPSRAGGLLSRFKSSWAENYSLFSWADKGQWETVQTPDRQVSREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWAAFAFVGVMIENSVVQLVLFCGLHSVMFFILMFLKPFANSVINNIEACVTAIDAISMGV-FAASALWWEGTNRAAHLN---TSVVVLQLLSLFALVIPVYLDAVTIVMGAI 1654
BLAST of mRNA_Ecto-sp13_S_contig17521.5270.1 vs. uniprot
Match: D8LN93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN93_ECTSI) HSP 1 Score: 117 bits (293), Expect = 2.550e-26 Identity = 80/246 (32.52%), Postives = 123/246 (50.00%), Query Frame = 1
Query: 7 FPVLMFIYVSRIVWSRVRPDNSPLRYEPNP---------------NAGKGCFLFKACGGFCKAWTSGSSMFEWADKGQW--ASKNNEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADAITLGLMFYATFLEPDDDDDADRLELVYAGALSVQTLAILFFVIPLYLDAFITIVGALCKKCSRLAKGTTS 693
+P+LMF+ V R + RVRP N+ + + P A FL K G W S+F WA+KG W A +NE + + FRIGFEPLFVD+T+ G +V F L EW + G I + +Q C ++ L FL+LV +PF+NS+I V DA+ + L+ + + A +++ V + +Q A+ +IP+Y+D + ++GA+ SRL K TT+
Sbjct: 1079 YPILMFVAVLRTFFVRVRP-NTLIVFTPKEADDDTGDAGDAEEGQRARSASFLSKVRAG----WEEDHSLFAWANKGTWETAETDNEGTRREGQWFRIGFEPLFVDFTKSGAWFVAFTLVEWAALGCIGALIDESVLQLSLFCALHTLSFLLLVVFRPFANSVINAMGAGLVGIDAVCMALLAVSAS-RWEGTAAAGKVDSV---VMLLQLFALCALIIPIYIDTSLILIGAI---RSRLQKSTTT 1312
BLAST of mRNA_Ecto-sp13_S_contig17521.5270.1 vs. uniprot
Match: A0A6H5JTJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTJ3_9PHAE) HSP 1 Score: 110 bits (275), Expect = 6.450e-24 Identity = 63/168 (37.50%), Postives = 96/168 (57.14%), Query Frame = 1
Query: 163 SSMFEWADKGQWASKNNEDVDL--DSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADAITLGLMFYA--TFLEPDDDDDADRLELVYAGALSVQTLAILFFVIPLYLDAFITIVGAL 654
SS+F WADKG W + D D D+ FRIGFEPL+ D+TQ G+ + + L EW + IA V N +Q G C ++ + F++LV KPF+NS++ + +L DA+ +G++ + TF ADR+++V A Q L I V+PLY+D + + GA+
Sbjct: 415 SSLFAWADKGHWNTVQTADEDARRDADWFRIGFEPLYADFTQAGSWFTVYTLIEWATLACIAVLVDNSAVQCGLFCALHSMTFILLVVCKPFANSVLNTMGAIVMLTDAVCMGMLALSAGTFRMTAA---ADRIDIVVMVA---QHLCIAVLVVPLYVDTLLLVWGAI 576
BLAST of mRNA_Ecto-sp13_S_contig17521.5270.1 vs. uniprot
Match: A0A6H5J9C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C2_9PHAE) HSP 1 Score: 102 bits (255), Expect = 2.450e-21 Identity = 76/225 (33.78%), Postives = 116/225 (51.56%), Query Frame = 1
Query: 1 IVFPVLMFIYVSRI--VWSRVRPDNSPLRYEPNPN---AGKGCFLFKACGGFCKAWTSGSSMFEWADKGQWASKN--NEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADAITLGLMFYA--TFLEPDDDDDADRLELVYAGALSVQTLAILFFVIPLYLDAFITIVG 648
+++P+LM + V+R VW V+PD + AGK L + G + S+F WADKGQW + N+ + FRIGFEPLF D+TQ G+ ++ + L E IA V N +Q C ++ L F++LV KPF+NS++ M +L DA+ +G++ A TF + A R++ + +Q L I VIPLY+D ++I G
Sbjct: 407 VLYPLLMVVMVARTHRVW--VQPDALIVFASSETEEALAGKPSTLSRTVSGL----KNDFSLFSWADKGQWETVQTANDKARRKADWFRIGFEPLFADFTQAGSWFIIYTLIECAVLASIAVLVDNSAMQFLLFCAMHSLTFVLLVGWKPFANSVLNAVAAMVMLTDAVCMGMLALAAGTF---NGTATAARMD---TAVMVIQALCIAVLVIPLYVDTAVSIYG 619 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17521.5270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17521.5270.1 >prot_Ecto-sp13_S_contig17521.5270.1 ID=prot_Ecto-sp13_S_contig17521.5270.1|Name=mRNA_Ecto-sp13_S_contig17521.5270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=238bp MFIYVSRIVWSRVRPDNSPLRYEPNPNAGKGCFLFKACGGFCKAWTSGSSback to top mRNA from alignment at Ecto-sp13_S_contig17521:117..3376- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17521.5270.1 ID=mRNA_Ecto-sp13_S_contig17521.5270.1|Name=mRNA_Ecto-sp13_S_contig17521.5270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3260bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17521:117..3376- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17521:117..3376- >mRNA_Ecto-sp13_S_contig17521.5270.1 ID=mRNA_Ecto-sp13_S_contig17521.5270.1|Name=mRNA_Ecto-sp13_S_contig17521.5270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=714bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17521:117..3376- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |