mRNA_Ecto-sp13_S_contig17521.5270.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17521.5270.1
Unique NamemRNA_Ecto-sp13_S_contig17521.5270.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17521.5270.1 vs. uniprot
Match: D7G3P1_ECTSI (Similar to Mucin-1 (MUC-1) (Polymorphic epithelial mucin) (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P1_ECTSI)

HSP 1 Score: 467 bits (1202), Expect = 1.470e-154
Identity = 232/235 (98.72%), Postives = 233/235 (99.15%), Query Frame = 1
Query:    1 IVFPVLMFIYVSRIVWSRVRPDNSPLRYEPNPNAGKGCFLFKACGGFCKAWTSGSSMFEWADKGQWASKNNEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADAITLGLMFYATFLEPDDDDDADRLELVYAGALSVQTLAILFFVIPLYLDAFITIVGALCKKCSRLAKGTTSKFKA 705
            IVFPVLMFIYVSRIVWSRVRPDNSPLRYEPNPNAGKGCFLFKACGGFCKAWTSGSSMFEWADKGQWASKNNEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADAITLGLMFYATFLEPDDDDDADRLELVYAGAL VQTLAILFFVIPLYLDAFITIVG LCKKCS+LAKGTTSKFKA
Sbjct:  722 IVFPVLMFIYVSRIVWSRVRPDNSPLRYEPNPNAGKGCFLFKACGGFCKAWTSGSSMFEWADKGQWASKNNEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADAITLGLMFYATFLEPDDDDDADRLELVYAGALLVQTLAILFFVIPLYLDAFITIVGTLCKKCSQLAKGTTSKFKA 956          
BLAST of mRNA_Ecto-sp13_S_contig17521.5270.1 vs. uniprot
Match: A0A6H5LAH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAH5_9PHAE)

HSP 1 Score: 451 bits (1161), Expect = 7.320e-146
Identity = 231/270 (85.56%), Postives = 235/270 (87.04%), Query Frame = 1
Query:    1 IVFPVLMFIYVSRIVWSRVRPDNSPLRYEPNPNAGKGCFLFKACGGFCKAWTSGSSMFEWADKGQWASKNNEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADAITLGLMFYATFLEPDDDDDADRLELVYAGALSVQ----------------------------------TLAILFFVIPLYLDAFITIVGALCKKCSRLAKGTTSKFKAR 708
            IVFPVLMFIYVSRIVWSRVRPDNSPLRYEPNPNAGKGCFLFKACGGFCKAWTSGSSMFEWA+KGQWASKNNEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEW+SFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLAD ITLGLMFYATFLEPDDDDDADRLELVYAGALSVQ                                  TLAILFFVIPLYLDAFITI+GALCKKCS+LAKGTTSKFKAR
Sbjct: 1045 IVFPVLMFIYVSRIVWSRVRPDNSPLRYEPNPNAGKGCFLFKACGGFCKAWTSGSSMFEWAEKGQWASKNNEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWMSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADTITLGLMFYATFLEPDDDDDADRLELVYAGALSVQAWFRVVCDFLDASPPARPPVLLVAGAVSLPTSAQTLAILFFVIPLYLDAFITIIGALCKKCSQLAKGTTSKFKAR 1314          
BLAST of mRNA_Ecto-sp13_S_contig17521.5270.1 vs. uniprot
Match: A0A6H5JTC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC8_9PHAE)

HSP 1 Score: 227 bits (579), Expect = 4.450e-68
Identity = 112/245 (45.71%), Postives = 159/245 (64.90%), Query Frame = 1
Query:   28 YVSRIVWSRVRPDNSPLRYEPN--PNAGKG---------CFLFKACGGFCKAWTSGSSMFEWADKGQWASKNNEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADAITLGLMFYATFLEPDDDDDADRLELVYAGALSVQTLAILFFVIPLYLDAFITIVGALCKKCSRLAKGTTSKFKARCIKRGLW 729
            YV RIVWSRV+P   P+ ++    P  G G         C+    C GF   W +G S+FEWADKG W S  +E VDLDSRKFRIGFEPLFVD+T++G +Y+ FL+F+W +  +IAG VTNGT+QT ++  IY++D  +L  L+PFSNS++Q   T+ V ADA+TL LM +A+ L+PD+D D  +L+ +YAG + VQTL I+   IP+Y D F+ +   + +K S+L +G  +    +   +G W
Sbjct:    3 YVGRIVWSRVKPQEGPVTFDKGLAPAGGDGXXXXXGRKRCWCVLLCKGFRDGWRNGHSVFEWADKGAWVSLKDEKVDLDSRKFRIGFEPLFVDFTKEGAVYIIFLIFKWFALAVIAGLVTNGTVQTASLAVIYLVDVALLCMLRPFSNSVVQWVETLLVTADALTLALMVWASALDPDEDGDKRKLDNIYAGCMLVQTLGIILLTIPIYADTFVVLFSQIRQKASKLWRGERTPRAEKSDIKGSW 247          
BLAST of mRNA_Ecto-sp13_S_contig17521.5270.1 vs. uniprot
Match: D8LIK9_ECTSI (Beta strand repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK9_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 1.510e-67
Identity = 116/245 (47.35%), Postives = 163/245 (66.53%), Query Frame = 1
Query:    4 VFPVLMFIYVSRIVWSRVRPDNSPLRYEPN--PNAG-KGCFLFKACGGFCKAWTSGSSMFEWADKGQWASKNNEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADAITLGLMFYATFLEPDDDDDADRLELVYAGALSVQTLAILFFVIPLYLDAFITIVGALCKKCSRLAKGTTSKFKARCIKRGLW 729
            +FP+ +  YV RIVWSRV+P   P+ +     P  G K C+    C GF   W +G S+FEWADKG W S  +E VDL+SRKFRIGFEPLFVD+T++G +Y+ FLLF+W + G+IAG VTNGT+QT ++  IY++D  +L  L+PFSNS++Q   T+ V ADA+TLG+M +A+ L+PD D D  +L+ +YAG + +QTL I    IP+Y D FI I   +  K S+L +G  +  + +   +G W
Sbjct: 1177 IFPIFLMFYVGRIVWSRVKPQEGPVTFTKGLAPEEGRKRCWCVSLCRGFRDGWRNGHSIFEWADKGAWVSLKDEKVDLESRKFRIGFEPLFVDFTKEGAVYIIFLLFKWFALGIIAGLVTNGTVQTASLAVIYLVDIALLCKLRPFSNSVVQWVETVLVTADALTLGMMVWASVLDPDMDADKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVIFFQIRHKASKLWRGERTPREQKSDIKGSW 1421          
BLAST of mRNA_Ecto-sp13_S_contig17521.5270.1 vs. uniprot
Match: A0A6H5JD90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD90_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 4.370e-31
Identity = 91/242 (37.60%), Postives = 129/242 (53.31%), Query Frame = 1
Query:    1 IVFPVLMFIYVSRIVWSRVRPDNSPL--RYEPN------PNAGKGCFLFKACGGFCKAWTSGSSMFEWADKGQWASKN--NEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADAITLGLMFYATFLEPDDDDDADRLELVYAGALSVQTLAILFFVIPLYLDAFITIVGALCKKCSRLAKGTTSK 696
            +++P+LMF  V R ++ RVRPD   +   Y+ +      PN G+G FL +    F  +W    S+F WADKGQW +    N ++  +   FRIGFEP+FVDYT++GT ++   L EW S  L+   + N  +Q    C +    FLILVCLKPF+NS+I       V  DA+  GL+  A           D    V  G L + +L  L  VIP+YLDA   ++GA+ K+  R A G T +
Sbjct: 1658 VLYPLLMFATVVRTLFVRVRPDELLIFKTYDEDGTNGNTPN-GRGGFLSR----FKSSWAENYSLFSWADKGQWETVQTPNRNITREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWASIALVGVMIDNSYVQLLLFCGLQSAMFLILVCLKPFANSVINGIGACIVAIDAVCTGLLAVAALKWEGTSRATDVNSAV--GVLQIVSLCAL--VIPVYLDAVTIVMGAIRKRI-RKALGKTGQ 1889          
BLAST of mRNA_Ecto-sp13_S_contig17521.5270.1 vs. uniprot
Match: D8LLG6_ECTSI (Mucin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG6_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 5.100e-30
Identity = 88/241 (36.51%), Postives = 126/241 (52.28%), Query Frame = 1
Query:    1 IVFPVLMFIYVSRIVWSRVRPDNSPL--RYEPNPNAG-----KGCFLFKACGGFCKAWTSGSSMFEWADKGQWASKN--NEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADAITLGLMFYATFLEPDDDDDADRLELVYAGALSVQTLAILFFVIPLYLDAFITIVGALCKKCSRLAKGTTSK 696
            +++P+LMF  V R ++ RVRPD   +   Y+ +   G     +G FL      F  +W    S+F WADKGQW +    N ++  +   FRIGFEP+FVDYT++GT ++   L EW S  L+   + N  +Q    C +    FLILVCLKPF+NS+I       V  DA++ GL+  A           D    V  G L + +L  L  VIP+YLDA   ++GA+  +  R A G T +
Sbjct: 1617 VLYPLLMFATVVRTLFVRVRPDELLIFKTYDEDGTNGNAPNCRGGFLSH----FKSSWAENYSLFSWADKGQWETVQTPNRNITREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWASIALVGVMIDNSNVQLLLFCGLQSAMFLILVCLKPFANSVINGIGACIVAIDAVSTGLLAVAALKWEGTSRATDVNSAV--GVLQIVSLCAL--VIPVYLDAVTIVMGAIRNRI-RKALGKTGQ 1848          
BLAST of mRNA_Ecto-sp13_S_contig17521.5270.1 vs. uniprot
Match: D7FWS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS4_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 3.580e-28
Identity = 79/224 (35.27%), Postives = 120/224 (53.57%), Query Frame = 1
Query:    1 IVFPVLMFIYVSRIVWSRVRPDNSPLRYEPNPNAGKGCFLFKACGG----FCKAWTSGSSMFEWADKGQWASKNNED--VDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADAITLGLMFYATFLEPDDDDDADRLELVYAGALSVQTLAILFFVIPLYLDAFITIVGAL 654
            +++P+LMF+ V R +  RVRP N  L ++     G         GG    F  +W    S+F WADKGQW +    D  V  +   FRIGFEP+FVDYT++GT ++   L EW +F  +   + N  +Q    C ++ + F IL+ LKPF+NS+I          DAI++G+ F A+ L  +  + A  L       + +Q L++   VIP+YLDA   ++GA+
Sbjct: 1436 VLYPLLMFVTVFRTLLVRVRP-NVLLIFKTYAEDGTNGDAPSRAGGLLSRFKSSWAENYSLFSWADKGQWETVQTPDRQVSREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWAAFAFVGVMIENSVVQLVLFCGLHSVMFFILMFLKPFANSVINNIEACVTAIDAISMGV-FAASALWWEGTNRAAHLN---TSVVVLQLLSLFALVIPVYLDAVTIVMGAI 1654          
BLAST of mRNA_Ecto-sp13_S_contig17521.5270.1 vs. uniprot
Match: D8LN93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN93_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 2.550e-26
Identity = 80/246 (32.52%), Postives = 123/246 (50.00%), Query Frame = 1
Query:    7 FPVLMFIYVSRIVWSRVRPDNSPLRYEPNP---------------NAGKGCFLFKACGGFCKAWTSGSSMFEWADKGQW--ASKNNEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADAITLGLMFYATFLEPDDDDDADRLELVYAGALSVQTLAILFFVIPLYLDAFITIVGALCKKCSRLAKGTTS 693
            +P+LMF+ V R  + RVRP N+ + + P                  A    FL K   G    W    S+F WA+KG W  A  +NE    + + FRIGFEPLFVD+T+ G  +V F L EW + G I   +    +Q    C ++ L FL+LV  +PF+NS+I       V  DA+ + L+  +     +    A +++ V    + +Q  A+   +IP+Y+D  + ++GA+    SRL K TT+
Sbjct: 1079 YPILMFVAVLRTFFVRVRP-NTLIVFTPKEADDDTGDAGDAEEGQRARSASFLSKVRAG----WEEDHSLFAWANKGTWETAETDNEGTRREGQWFRIGFEPLFVDFTKSGAWFVAFTLVEWAALGCIGALIDESVLQLSLFCALHTLSFLLLVVFRPFANSVINAMGAGLVGIDAVCMALLAVSAS-RWEGTAAAGKVDSV---VMLLQLFALCALIIPIYIDTSLILIGAI---RSRLQKSTTT 1312          
BLAST of mRNA_Ecto-sp13_S_contig17521.5270.1 vs. uniprot
Match: A0A6H5JTJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTJ3_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 6.450e-24
Identity = 63/168 (37.50%), Postives = 96/168 (57.14%), Query Frame = 1
Query:  163 SSMFEWADKGQWASKNNEDVDL--DSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADAITLGLMFYA--TFLEPDDDDDADRLELVYAGALSVQTLAILFFVIPLYLDAFITIVGAL 654
            SS+F WADKG W +    D D   D+  FRIGFEPL+ D+TQ G+ +  + L EW +   IA  V N  +Q G  C ++ + F++LV  KPF+NS++     + +L DA+ +G++  +  TF        ADR+++V   A   Q L I   V+PLY+D  + + GA+
Sbjct:  415 SSLFAWADKGHWNTVQTADEDARRDADWFRIGFEPLYADFTQAGSWFTVYTLIEWATLACIAVLVDNSAVQCGLFCALHSMTFILLVVCKPFANSVLNTMGAIVMLTDAVCMGMLALSAGTFRMTAA---ADRIDIVVMVA---QHLCIAVLVVPLYVDTLLLVWGAI 576          
BLAST of mRNA_Ecto-sp13_S_contig17521.5270.1 vs. uniprot
Match: A0A6H5J9C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C2_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 2.450e-21
Identity = 76/225 (33.78%), Postives = 116/225 (51.56%), Query Frame = 1
Query:    1 IVFPVLMFIYVSRI--VWSRVRPDNSPLRYEPNPN---AGKGCFLFKACGGFCKAWTSGSSMFEWADKGQWASKN--NEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADAITLGLMFYA--TFLEPDDDDDADRLELVYAGALSVQTLAILFFVIPLYLDAFITIVG 648
            +++P+LM + V+R   VW  V+PD   +          AGK   L +   G      +  S+F WADKGQW +    N+     +  FRIGFEPLF D+TQ G+ ++ + L E      IA  V N  +Q    C ++ L F++LV  KPF+NS++     M +L DA+ +G++  A  TF   +    A R++      + +Q L I   VIPLY+D  ++I G
Sbjct:  407 VLYPLLMVVMVARTHRVW--VQPDALIVFASSETEEALAGKPSTLSRTVSGL----KNDFSLFSWADKGQWETVQTANDKARRKADWFRIGFEPLFADFTQAGSWFIIYTLIECAVLASIAVLVDNSAMQFLLFCAMHSLTFVLLVGWKPFANSVLNAVAAMVMLTDAVCMGMLALAAGTF---NGTATAARMD---TAVMVIQALCIAVLVIPLYVDTAVSIYG 619          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17521.5270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3P1_ECTSI1.470e-15498.72Similar to Mucin-1 (MUC-1) (Polymorphic epithelial... [more]
A0A6H5LAH5_9PHAE7.320e-14685.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTC8_9PHAE4.450e-6845.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIK9_ECTSI1.510e-6747.35Beta strand repeat-containing protein n=1 Tax=Ecto... [more]
A0A6H5JD90_9PHAE4.370e-3137.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLG6_ECTSI5.100e-3036.51Mucin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FWS4_ECTSI3.580e-2835.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LN93_ECTSI2.550e-2632.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTJ3_9PHAE6.450e-2437.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9C2_9PHAE2.450e-2133.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17521contigEcto-sp13_S_contig17521:117..3376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score228.0
Seed ortholog evalue4.6e-57
Seed eggNOG ortholog2880.D8LIK9
Model size732
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.structural constituent of cuticle
EggNOG OGsKOG3544@1,KOG3544@2759
Cds size714
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17521.5270.1prot_Ecto-sp13_S_contig17521.5270.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17521 117..3358 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462912.0574474-CDS-Ecto-sp13_S_contig17521:116..2631681462912.0574474-CDS-Ecto-sp13_S_contig17521:116..263Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17521 117..263 -
1681462912.0678911-CDS-Ecto-sp13_S_contig17521:705..8221681462912.0678911-CDS-Ecto-sp13_S_contig17521:705..822Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17521 706..822 -
1681462912.0764558-CDS-Ecto-sp13_S_contig17521:1946..20711681462912.0764558-CDS-Ecto-sp13_S_contig17521:1946..2071Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17521 1947..2071 -
1681462912.0849502-CDS-Ecto-sp13_S_contig17521:2552..27611681462912.0849502-CDS-Ecto-sp13_S_contig17521:2552..2761Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17521 2553..2761 -
1681462912.093247-CDS-Ecto-sp13_S_contig17521:3242..33581681462912.093247-CDS-Ecto-sp13_S_contig17521:3242..3358Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17521 3243..3358 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462912.1019182-UTR-Ecto-sp13_S_contig17521:3358..33761681462912.1019182-UTR-Ecto-sp13_S_contig17521:3358..3376Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17521 3359..3376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17521.5270.1

>prot_Ecto-sp13_S_contig17521.5270.1 ID=prot_Ecto-sp13_S_contig17521.5270.1|Name=mRNA_Ecto-sp13_S_contig17521.5270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=238bp
MFIYVSRIVWSRVRPDNSPLRYEPNPNAGKGCFLFKACGGFCKAWTSGSS
MFEWADKGQWASKNNEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFE
WLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMT
VLADAITLGLMFYATFLEPDDDDDADRLELVYAGALSVQTLAILFFVIPL
YLDAFITIVGALCKKCSRLAKGTTSKFKARCIKRGLW*
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mRNA from alignment at Ecto-sp13_S_contig17521:117..3376-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17521.5270.1 ID=mRNA_Ecto-sp13_S_contig17521.5270.1|Name=mRNA_Ecto-sp13_S_contig17521.5270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3260bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17521:117..3376- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGTGTTTCCCGTCCTGATGTTCATCTACGTGAGCCGTATCGTGTGGAG CCGCGTGCGCCCGGACAACTCTCCCCTGCGGTACGAGCCCAACCCCAACG CCGGCAAGGGCTGCTTCCTCTTCAAGGCCTGCGGGTGAGGACTTGTGCGT GTACCGTTACGATGGGATCGATGAAAACGGTTTGTAGGTCAACGAATTAC AAGCAGCACGAGAAGAATACGAGACGACACTTTGTAGTGCACGTGCATGC ACCGCGTAAGTCGGCCTCACGAAGCGCGCATCGATCTTGTCCGCCAACGA GCGGTTGGTTGTCGAAGTGGGACGAACGTTGTTGGTCTTAGCGGGACGAA CGGTTGGTGGTCTATGCGGCGCAAAATGTTGTTGGTCTTCGAGGGACGAA CGGTTGTTAGTCTTAGCGAGACGAAGGGTTGTTGGTCATAACGGCGGCGA ACGGTTAGAGGAACAGAGGGTTTTTGGTCTTGGGAGACAAACGGTTGTTG GTAACGGGACCAGCGGTCGTCAATCTTTGCGGGACCAGTGACTGTATGTC TTCCCGGGACGAAAGACCTCGAGACCGATGTGCGCACATGTACGCTTTGT TGTGTCCTCCATCAGAGGCTTCTGCAAGGCGTGGACTAGCGGGTCCTCGA TGTTCGAGTGGGCGGACAAGGGGCAGTGGGCGTCCAAGAACAACGAGGAC GTCGACCTCGACAGCCGCAAGTTCCGCATCGGCTTCGAGCCGCTGTTCGT GGACTACACACAGAAGGGCACGCTCTACGTGACGTTCCTCCTGTTCGAGT GGTTGTCCTTCGGCCTTATCGCTGGTAAGTTTTTTTTTGTGTGTGTGGAT GTTTTCCGTACCCATCCAGCTCAACTCTAACCCTCCGATGAAGTGTTGTC TTTACTTCATACATGGTGAACATTTTGGTAGCTTCTCCGTTCTTCGTCAA AACATCCGTACCGATCCAACGGACTCGGACGCTTTCCGTGGTCACAGGCC AACTTACCAAGGGTACACGTTACCACATCTTATGCGAAATGTCAAAGAGC CGAATAACATTGGGGCAACGATATGTGCACGGGAAACCATTGGCACTTTG CAGGGAAAAACATAACCAGATGGAATGAACTCCTATTTAGTTACGTTGCA TCGTCTACACTGAAAAGGAGCAACGATGATTCGTTTTTATTTAACCCAAA TCATAACACGATGATGTTTGTACTTTTCTGGAATGCCACGATGGTAGTTG TTTGTCCTGATTGCTACCGCTGGTGTGCTTTTTGTTGTGATCGCGCTACG GTCAGGCTTCGTGACCAACGGTACCATCCAGACAGGGGCGGTCTGCTTCA TTTACGTGCTGGACTTCCTCATCCTGGTGTGCCTCAAGCCGTTCTCCAAC TCGATAATCCAATGCTTCACCACCATGACGGTGCGTTCCTCGTCGACCGG GCGTCGGTCGTTACAGCGCTTGTGCCAATCCCATCTTGCGTGTGGTTTCT TGTCGAGTGGGTTGTTTTTATTCCCGAGTCCCATCAAAATAGTTGTTGCA CGTCGTATTGGTGGGTTCTGTCGGCAGTGGTGTATATCCTGGTTCTCGGA GTTGACCTCCCCCCCCTAGGATTCCCCCCCCACCCGGTGTTTGCCATCGC TGTTGGGTTTTCGACGCTTGGCATCGATGTTGTTAAGCAAGTCGATCACT TCGCGAGCTCGGCAACCAGGTTACCGGGGTTTTTTTGCGGTAACCATGGG GCGGTAACCATGAATGGTGGTCGAGTAGATCATGTTGTGCGGGGTTGAGA ACCCCCACTCCGCGCAAGGGGGATGATCGCACCGCGTTGTGTTCAAATGG TGAAGCACCCTCGAGGCAGTTAGCTACAACTGTATCTGGAGGTGAAAGCA CCAGAAAATAAATTAAGTCATACGCAGCTGTCATCCGTACGCAAGGAGGT AAGCACAAGATGCCGAACACCCTTAATAGGATGCAGCACACCCTTCATGC GATTCGCCGAGCACCTCACGGTGCTTCGCGCTTGGTGATGTGAGAGTCTG GTCCGGTGAGAACCCGGCGTGCTCCGTCCCGGTTTTGTAGGGATGCGAGG TCAGTGGTCAAACGACAACGGCATGCACGACTATGAGCGCCCCCCCCCCC CCCCCCCCCCCGAGGATGCGAGGTCAAAGGCCAAACTACGGCTGCACGAC GATGAGTACATCCCTACCCCCAAAGGATTTGACCCTGGCGGCAAGCCAGT GTGAAACCACCCGCCGCATCTTGTCCTTGCGGGCTTTCCTTGCTCGTCTC AGACCGTTTCAGCTCGAGCACCATCCATCACCATGTGGTCACGCCCGTGA CCCAACCGCAGTCTATCGCGAAAGCAGGCTGCCACAGGAAACCTGGACAA TCCGCTTTTTTTACTCCGTCCTACCCTTAATCACAAATCTAATTTAGCTG TAAAATAATCGTTTTTAAGTGTTTGTCAAGCTTGAATCGCACCCGTAAAC GCGTCTTTGTTTTTCCTCCCCCCACTAAATACATCTTTCCACCCGCGACA AAAGGTTTTAGCCGACGCCATTACTCTCGGACTCATGTTCTACGCGACTT TCCTGGAACCAGACGACGACGACGACGCGGATCGGCTCGAGCTCGTGTAC GCCGGGGCTCTCTCGGTCCAGGTTAGTCGTCGTGGGATGTATCTCTTGCA CGTACGTCCCACGTTGTCGGTGTTGTGACAATCGTTGTGGCATGTCTTCT ACGCGAACGTTCATGTTGCTGGCGTTGTGGTAGTCGTTGTGGGATATATC TTGCGCGTAAGTTCACATTGTTGTTGGTGTGGCGAGGTTGTTACCAGTTT CACATGGTTGTCTTCAGTTCCATGTCGATCCGGCGGCTGGCAACATGGTA TTGCTCGTGCGGTCCACGTGCGCTCTCATCATCCTCTTTAGGCTGATTCT TCTCCTGCCTCAAGTGTTCCCATAGGTCGGTGCCACTACAGCTTGTTGTT TGGTAACATGCTTGGATCCGCATTGTGTGTGATTTTCCTGACACCTCTCC GCCCGCCCGCCCCCCCCCTGTCCTACTCGTTGCTTGTGTTGTCTCTTTGT CCACCTCCCCCAGACCTTGGCCATCCTGTTCTTCGTGATACCGCTCTACC TGGACGCTTTCATCACCATTGTCGGAGCGCTCTGCAAGAAGTGCTCGCGG CTCGCGAAGGGGACTACCTCCAAGTTCAAGGCAAGATGCATAAAAAGAGG GCTTTGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17521:117..3376-

>mRNA_Ecto-sp13_S_contig17521.5270.1 ID=mRNA_Ecto-sp13_S_contig17521.5270.1|Name=mRNA_Ecto-sp13_S_contig17521.5270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=714bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17521:117..3376- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCATCTACGTGAGCCGTATCGTGTGGAGCCGCGTGCGCCCGGACAA
CTCTCCCCTGCGGTACGAGCCCAACCCCAACGCCGGCAAGGGCTGCTTCC
TCTTCAAGGCCTGCGGAGGCTTCTGCAAGGCGTGGACTAGCGGGTCCTCG
ATGTTCGAGTGGGCGGACAAGGGGCAGTGGGCGTCCAAGAACAACGAGGA
CGTCGACCTCGACAGCCGCAAGTTCCGCATCGGCTTCGAGCCGCTGTTCG
TGGACTACACACAGAAGGGCACGCTCTACGTGACGTTCCTCCTGTTCGAG
TGGTTGTCCTTCGGCCTTATCGCTGGCTTCGTGACCAACGGTACCATCCA
GACAGGGGCGGTCTGCTTCATTTACGTGCTGGACTTCCTCATCCTGGTGT
GCCTCAAGCCGTTCTCCAACTCGATAATCCAATGCTTCACCACCATGACG
GTTTTAGCCGACGCCATTACTCTCGGACTCATGTTCTACGCGACTTTCCT
GGAACCAGACGACGACGACGACGCGGATCGGCTCGAGCTCGTGTACGCCG
GGGCTCTCTCGGTCCAGACCTTGGCCATCCTGTTCTTCGTGATACCGCTC
TACCTGGACGCTTTCATCACCATTGTCGGAGCGCTCTGCAAGAAGTGCTC
GCGGCTCGCGAAGGGGACTACCTCCAAGTTCAAGGCAAGATGCATAAAAA
GAGGGCTTTGGTAG
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