mRNA_Ecto-sp13_S_contig17500.5259.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17500.5259.1
Unique NamemRNA_Ecto-sp13_S_contig17500.5259.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17500.5259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17500contigEcto-sp13_S_contig17500:2936..3376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size441
Hectar predicted targeting categoryother localisation
Exons1
Cds size441
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462911.4637458-CDS-Ecto-sp13_S_contig17500:2935..33761681462911.4637458-CDS-Ecto-sp13_S_contig17500:2935..3376Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17500 2936..3376 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17500.5259.1prot_Ecto-sp13_S_contig17500.5259.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17500 2936..3376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17500.5259.1

>prot_Ecto-sp13_S_contig17500.5259.1 ID=prot_Ecto-sp13_S_contig17500.5259.1|Name=mRNA_Ecto-sp13_S_contig17500.5259.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=147bp
PDPRASNKNDYSSQPSQLRGKSVCKSAPNSSFFTIRSKTILRSILQPHKE
NASDKPSTRMREKATPLSRTCSQREVACQKLVDIGTGGESGVRRISNRRL
SPTAQILTSVGWRTFDPSILTPSISEEKGRKCLQLRAVGTRITTLT*
back to top

mRNA from alignment at Ecto-sp13_S_contig17500:2936..3376+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17500.5259.1 ID=mRNA_Ecto-sp13_S_contig17500.5259.1|Name=mRNA_Ecto-sp13_S_contig17500.5259.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17500:2936..3376+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTGACCCACGTGCATCGAACAAAAACGATTATTCTTCTCAACCGTCGCA
ACTGAGAGGTAAATCAGTTTGTAAAAGCGCACCCAACAGTTCGTTCTTTA
CTATTCGGAGCAAAACAATACTTCGAAGTATTCTTCAACCGCACAAAGAA
AACGCCTCAGACAAACCATCCACCAGAATGAGGGAAAAGGCAACGCCACT
AAGCAGAACATGTTCGCAAAGGGAAGTCGCCTGCCAAAAGTTAGTTGATA
TCGGGACCGGGGGGGAGTCAGGGGTGCGTCGCATCAGTAACCGCCGTCTG
AGCCCAACAGCGCAAATATTGACGAGTGTGGGGTGGAGAACCTTTGACCC
ATCAATTCTAACCCCTAGCATTTCAGAAGAAAAGGGACGAAAGTGTCTTC
AACTTCGTGCGGTGGGGACAAGAATAACGACTCTCACATGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17500:2936..3376+

>mRNA_Ecto-sp13_S_contig17500.5259.1 ID=mRNA_Ecto-sp13_S_contig17500.5259.1|Name=mRNA_Ecto-sp13_S_contig17500.5259.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17500:2936..3376+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTGACCCACGTGCATCGAACAAAAACGATTATTCTTCTCAACCGTCGCA
ACTGAGAGGTAAATCAGTTTGTAAAAGCGCACCCAACAGTTCGTTCTTTA
CTATTCGGAGCAAAACAATACTTCGAAGTATTCTTCAACCGCACAAAGAA
AACGCCTCAGACAAACCATCCACCAGAATGAGGGAAAAGGCAACGCCACT
AAGCAGAACATGTTCGCAAAGGGAAGTCGCCTGCCAAAAGTTAGTTGATA
TCGGGACCGGGGGGGAGTCAGGGGTGCGTCGCATCAGTAACCGCCGTCTG
AGCCCAACAGCGCAAATATTGACGAGTGTGGGGTGGAGAACCTTTGACCC
ATCAATTCTAACCCCTAGCATTTCAGAAGAAAAGGGACGAAAGTGTCTTC
AACTTCGTGCGGTGGGGACAAGAATAACGACTCTCACATGA
back to top