mRNA_Ecto-sp13_S_contig1750.5258.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1750.5258.1
Unique NamemRNA_Ecto-sp13_S_contig1750.5258.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1750.5258.1 vs. uniprot
Match: D8LLQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ3_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.150e-21
Identity = 52/97 (53.61%), Postives = 64/97 (65.98%), Query Frame = 1 
Query:    4 MHTKNVKFEVRKGTRMHFRAPGFTFERDQGDKTHIFDVNGNLSFHAHLHHSRDLGNTRPDDPHWMLHASPDANVTTLGGSSLHFSETSVIVVAGPVD 294
            ++TKN++F VRKG +M FRAP  TFER+QGD   IF+V+G L      H   DL NTR DDPH  +  SPD ++ T G S+L FSETSVIV   P D
Sbjct:  299 LYTKNLRFNVRKGEKMKFRAPALTFEREQGDTAEIFNVDGELHLRGDQHRFDDLVNTRTDDPHDTIRGSPDGDIITYGVSTLRFSETSVIVDVAPTD 395
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BLAST of mRNA_Ecto-sp13_S_contig1750.5258.1 vs. uniprot
Match: A0A6H5L8D9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D9_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 4.690e-12
Identity = 46/107 (42.99%), Postives = 56/107 (52.34%), Query Frame = 1 
Query:    4 MHTKNVKFEVRKGTRMHFRAPGFTFERDQGDKTHIFDVNGNLSFHAHLHHSRDLGNTRPDDPHWMLHASPDANVTTLGGSSLHFSETSVIVVAGPVDA--LASGSDN 318
            ++TKNV+F VRKG +MH RAP  TFER+Q                              DDPH  +H SPD ++ T G S+L FSETSVIV A P D     +GSDN
Sbjct:  318 LYTKNVRFSVRKGEKMHIRAPALTFEREQ------------------------------DDPHDTIHGSPDGDIITYGVSTLRFSETSVIVDAAPADTDTYDNGSDN 394
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BLAST of mRNA_Ecto-sp13_S_contig1750.5258.1 vs. uniprot
Match: A0A6H5L206_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L206_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 6.310e-10
Identity = 33/58 (56.90%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    4 MHTKNVKFEVRKGTRMHFRAPGFTFERDQGDKTHIFDVNGNLSFHAHLHHSRDLGNTR 177
            ++T+NV+F VRKG +M FRAP  TFERDQGD   IF+VNG L      H   DL NTR
Sbjct:  307 LYTRNVRFSVRKGEKMKFRAPALTFERDQGDTAEIFNVNGELHLRGDQHRFDDLVNTR 364
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1750.5258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LLQ3_ECTSI1.150e-2153.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L8D9_9PHAE4.690e-1242.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L206_9PHAE6.310e-1056.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1750contigEcto-sp13_S_contig1750:14051..15887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size909
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_004637.1
Cds size909
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462911.4123926-CDS-Ecto-sp13_S_contig1750:14050..141401681462911.4123926-CDS-Ecto-sp13_S_contig1750:14050..14140Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1750 14051..14140 +
1681462911.4243996-CDS-Ecto-sp13_S_contig1750:14591..146811681462911.4243996-CDS-Ecto-sp13_S_contig1750:14591..14681Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1750 14592..14681 +
1681462911.43486-CDS-Ecto-sp13_S_contig1750:15158..158871681462911.43486-CDS-Ecto-sp13_S_contig1750:15158..15887Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1750 15159..15887 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1750.5258.1prot_Ecto-sp13_S_contig1750.5258.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1750 14051..15887 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1750.5258.1

>prot_Ecto-sp13_S_contig1750.5258.1 ID=prot_Ecto-sp13_S_contig1750.5258.1|Name=mRNA_Ecto-sp13_S_contig1750.5258.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=303bp
MMHTKNVKFEVRKGTRMHFRAPGFTFERDQGDKTHIFDVNGNLSFHAHLH
HSRDLGNTRPDDPHWMLHASPDANVTTLGGSSLHFSETSVIVVAGPVDAL
ASGSDNADLHSSASPPFVDEKRSELQQKEPRSSTEQSSVNGARDNANSGG
HSDSGTKDNTNLSPEQHRHHHHHQDKQQRQRQQQQQRQHHQHEQQHEQQQ
QHQHQQHLQHHEDDSPSVPTASSSSTMGLDSDSNPNPLQQQQKQQQQQQQ
PHINNHIDTPNSSPQPSDVNSPSTTGGDIIVAPNQGLLPIDDIQNTRASA
LYT
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mRNA from alignment at Ecto-sp13_S_contig1750:14051..15887+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1750.5258.1 ID=mRNA_Ecto-sp13_S_contig1750.5258.1|Name=mRNA_Ecto-sp13_S_contig1750.5258.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1837bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1750:14051..15887+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGCACACCAAGAATGTCAAGTTCGAGGTCCGGAAGGGAACACGCAT
GCACTTCCGCGCCCCGGGTTTCACTTTTGAGCGTGATCAGGTAGCTCTTG
CATGTGTTGCTTGCTCGTCTGGGGTCCGCGGCTCGTTGAAAATAGCTGCG
TTTTTGCATGCAGAGGTCAGATGTTGAGCCTCCGCCCCTGTCGTGGGTTT
GTTTATCGTTATTGCTTGATTTTCCCCTTCCGGTTTCTTTCCAATTGTGT
TGATGTTAAGTTGGGACAATTTTCCCGAGATGTTTTGTGGATGAAAACAA
CTGGTCAAATTGCCGAGTGAGCCCAGCGCTGGTACTTTGTTATCCACTTT
CATCGGAGGTAGACGTACTGCTTCCCGTCACTAGCGATAACCATCCATTC
GGCAAGATCGTTCTTGCGTGCGGGTGAAGCCTTCCTCCCTCTCCCCGCAT
CTCTGCCCCCCTTGTTCATTCCATTTTCTCACGCCTCGATACTTTGTCTT
TGTCCAATATCCCCTCACGATTGCTGTGTATTCTTCGTTAGGGAGACAAG
ACCCACATATTTGACGTGAACGGCAACCTGAGCTTCCACGCCCACCTGCA
CCACTCCCGCGACCTGGGAAACACGAGACCGGTGGGCTCCTATTGGTTGC
GTTGTTTTTGTTGTTGTCGCTGTTGATGGCTGTGGTAGTGCTGTTTTGTT
GATACCTCGTGGTCAGGACGTTCTTGGCTAGTCTTTTTTCTACACGTTAG
GTCGTGCGTGTGCCAGATGTGCTTCCTTTCAACCGCACCATACACGCCGA
TTTTGGATCCCACACACTCACTCAAGTCGAAATGATTGCCCTTGAGCAGC
TCCAACACCAATCCAAGCAGTTTCGACGCACAACTCTACACGTGACCCCC
CGGACTCTCGGGTTATTCATGATTAGCTCACACCACCGTTATTTTCGGCA
ATCTAATGCTCTACACGCATAACCAAACGACGAAGCCTTCAAAGGATGCT
GTGTTTATCGCGAATTTGTTTTGCCTATATCCCGTCTGTCCCGCCGCTTC
TAGCTCCTCTCTCCCCTCGCACGCCCGCCGTTGGCCGCGTTTCAAACATA
CATCACAGGACGATCCGCATTGGATGCTCCACGCCTCCCCCGACGCAAAT
GTCACGACACTTGGAGGCTCGTCTCTCCACTTCAGCGAGACCTCCGTCAT
CGTTGTTGCTGGACCCGTCGACGCCCTCGCCAGCGGGAGCGACAACGCCG
ACCTTCACTCATCCGCCAGCCCGCCGTTCGTCGACGAGAAACGTTCCGAG
CTGCAGCAGAAGGAGCCCCGCTCTTCCACCGAGCAGTCTTCCGTCAACGG
GGCCCGGGACAACGCCAACTCCGGTGGCCACTCGGACTCTGGCACCAAAG
ACAACACCAACCTATCGCCCGAGCAACACCGGCACCATCACCACCACCAG
GACAAGCAGCAGCGCCAGCGCCAGCAGCAGCAGCAACGGCAACACCACCA
GCACGAGCAGCAGCACGAGCAGCAGCAGCAGCACCAGCACCAGCAGCACC
TACAACACCACGAAGACGACTCGCCTAGCGTACCCACCGCATCCTCGTCT
TCTACCATGGGGCTAGACAGCGACTCCAACCCCAACCCGTTGCAGCAGCA
GCAGAAGCAGCAGCAGCAGCAGCAGCAGCCCCACATAAACAACCATATCG
ACACCCCAAACAGCTCTCCTCAACCCTCCGACGTGAATTCGCCCTCTACC
ACAGGAGGTGACATCATCGTTGCCCCAAACCAGGGCCTTCTGCCCATTGA
CGACATCCAAAACACCCGCGCTTCGGCCTTGTACACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1750:14051..15887+

>mRNA_Ecto-sp13_S_contig1750.5258.1 ID=mRNA_Ecto-sp13_S_contig1750.5258.1|Name=mRNA_Ecto-sp13_S_contig1750.5258.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=909bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1750:14051..15887+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGCACACCAAGAATGTCAAGTTCGAGGTCCGGAAGGGAACACGCAT
GCACTTCCGCGCCCCGGGTTTCACTTTTGAGCGTGATCAGGGAGACAAGA
CCCACATATTTGACGTGAACGGCAACCTGAGCTTCCACGCCCACCTGCAC
CACTCCCGCGACCTGGGAAACACGAGACCGGACGATCCGCATTGGATGCT
CCACGCCTCCCCCGACGCAAATGTCACGACACTTGGAGGCTCGTCTCTCC
ACTTCAGCGAGACCTCCGTCATCGTTGTTGCTGGACCCGTCGACGCCCTC
GCCAGCGGGAGCGACAACGCCGACCTTCACTCATCCGCCAGCCCGCCGTT
CGTCGACGAGAAACGTTCCGAGCTGCAGCAGAAGGAGCCCCGCTCTTCCA
CCGAGCAGTCTTCCGTCAACGGGGCCCGGGACAACGCCAACTCCGGTGGC
CACTCGGACTCTGGCACCAAAGACAACACCAACCTATCGCCCGAGCAACA
CCGGCACCATCACCACCACCAGGACAAGCAGCAGCGCCAGCGCCAGCAGC
AGCAGCAACGGCAACACCACCAGCACGAGCAGCAGCACGAGCAGCAGCAG
CAGCACCAGCACCAGCAGCACCTACAACACCACGAAGACGACTCGCCTAG
CGTACCCACCGCATCCTCGTCTTCTACCATGGGGCTAGACAGCGACTCCA
ACCCCAACCCGTTGCAGCAGCAGCAGAAGCAGCAGCAGCAGCAGCAGCAG
CCCCACATAAACAACCATATCGACACCCCAAACAGCTCTCCTCAACCCTC
CGACGTGAATTCGCCCTCTACCACAGGAGGTGACATCATCGTTGCCCCAA
ACCAGGGCCTTCTGCCCATTGACGACATCCAAAACACCCGCGCTTCGGCC
TTGTACACG
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