mRNA_Ecto-sp13_S_contig17484.5250.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17484.5250.1
Unique NamemRNA_Ecto-sp13_S_contig17484.5250.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17484.5250.1 vs. uniprot
Match: D7FWQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ6_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 1.420e-33
Identity = 83/128 (64.84%), Postives = 83/128 (64.84%), Query Frame = 2 
Query:    2 ADEEARIRKASRWPP-PGRKAGVRQEGRGHRRHDVVGASPPAFFSSFSRGTR----GRVR*SKLLLKVFSTKAPKASMRPLAWRALHRGPIRRRPKQRVEETWTLGLIDVVAAMAATFVVGSRTTAAA 370
            ADEEARIRKASRWPP P  K          R  D   A                  G VR SKLL KVFSTKA KASMRPLA RALHRGP RRRPKQR EETWTLGL DVVAAMAATF VGSRTTAAA
Sbjct:    2 ADEEARIRKASRWPPLPAAK----------REFDKKAAXXXXXXXXXXXXXXXXPGGGVRPSKLLRKVFSTKALKASMRPLACRALHRGPSRRRPKQRAEETWTLGLHDVVAAMAATFFVGSRTTAAA 119
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17484.5250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWQ6_ECTSI1.420e-3364.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17484contigEcto-sp13_S_contig17484:919..1733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size445
Hectar predicted targeting categoryother localisation
Exons3
Cds size441
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462910.801349-CDS-Ecto-sp13_S_contig17484:920..12451681462910.801349-CDS-Ecto-sp13_S_contig17484:920..1245Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17484 921..1245 -
1681462910.8116894-CDS-Ecto-sp13_S_contig17484:1289..13771681462910.8116894-CDS-Ecto-sp13_S_contig17484:1289..1377Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17484 1290..1377 -
1681462910.8215168-CDS-Ecto-sp13_S_contig17484:1705..17331681462910.8215168-CDS-Ecto-sp13_S_contig17484:1705..1733Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17484 1706..1733 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17484.5250.1prot_Ecto-sp13_S_contig17484.5250.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17484 921..1733 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17484.5250.1

>prot_Ecto-sp13_S_contig17484.5250.1 ID=prot_Ecto-sp13_S_contig17484.5250.1|Name=mRNA_Ecto-sp13_S_contig17484.5250.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=147bp
GRRGGPHPEGIPVATPWAQSGSSTRRPRPSPSRCCGSLTSGLLFELQSRY
PGAGPLEQAFAQGVLHEGAEGLDATLGVACPPSRPHSPSTEATGGRNLDS
RLNRRRSGDGRDLRRRKPDDGGGAGGRGGSRSIGYLSHPPAPIRARG
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mRNA from alignment at Ecto-sp13_S_contig17484:919..1733-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17484.5250.1 ID=mRNA_Ecto-sp13_S_contig17484.5250.1|Name=mRNA_Ecto-sp13_S_contig17484.5250.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=815bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17484:919..1733- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCGACGAGGAGGCCCGCATCCGGAAGGTAAGAGCTGGCCAGGATCTTC
CCCTCCGGGTGGCCCCGCGGAATGGCGGTGGTAGGGGTGCCGGAGGAGGA
CAGCCGCAGGAGCACCACACTAGAGCTCGTGATGATGACACGTCGGCGGC
GGTGTGGAGGGGGAAAAAGCAGCAGCGGGAGAGAAGACTTCGGTCGACGG
CGACTCGGGGAGGGCGCGGCACTCTAAGGGCCGCATCAAAGCCTACAGTG
CCATCTTGGAGAAGATCCCGAGCAAGATTTTTCTCGTACGGGACCCCGCC
CCCGGGTATCGCCACCGCCGCCGCGGCTGTTGCTCCCTGCGCGAGTAGGA
ACGTAGGCATCCCGGTGGCCACCCCCTGGGCGCAAAGCGGGAGTTCGACA
AGAAGGCCGCGGCCATCGCCGTCACGATGTTGTGGGAGCCTCACGTCCAG
GAACGATCTAAAGACCTTGGCCATCTTGGGGGGAATAGCTCCGGCCTTCT
TTTCGAGCTTCAGTCGCGGTACCCGGGGGCGGGTCCGTTAGAGCAAGCTT
TTGCTCAAGGTGTTCTCCACGAAGGCGCCGAAGGCCTCGATGCGACCCTT
GGCGTGGCGTGCCCTCCATCGAGGCCCCATTCGCCGTCGACCGAAGCAAC
GGGTGGAAGAAACTTGGACTCTAGGCTTAATCGACGTCGTAGCGGCGATG
GCCGCGACCTTCGTCGTCGGAAGCCGGACGACGGCGGCGGCGCCGGCGGC
AGGGGCGGCTCTCGCTCGATCGGCTACCTGTCCCACCCGCCGGCGCCGAT
CCGCGCCCGTGGTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17484:919..1733-

>mRNA_Ecto-sp13_S_contig17484.5250.1 ID=mRNA_Ecto-sp13_S_contig17484.5250.1|Name=mRNA_Ecto-sp13_S_contig17484.5250.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17484:919..1733- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCGACGAGGAGGCCCGCATCCGGAAGGCATCCCGGTGGCCACCCCCTG
GGCGCAAAGCGGGAGTTCGACAAGAAGGCCGCGGCCATCGCCGTCACGAT
GTTGTGGGAGCCTCACCTCCGGCCTTCTTTTCGAGCTTCAGTCGCGGTAC
CCGGGGGCGGGTCCGTTAGAGCAAGCTTTTGCTCAAGGTGTTCTCCACGA
AGGCGCCGAAGGCCTCGATGCGACCCTTGGCGTGGCGTGCCCTCCATCGA
GGCCCCATTCGCCGTCGACCGAAGCAACGGGTGGAAGAAACTTGGACTCT
AGGCTTAATCGACGTCGTAGCGGCGATGGCCGCGACCTTCGTCGTCGGAA
GCCGGACGACGGCGGCGGCGCCGGCGGCAGGGGCGGCTCTCGCTCGATCG
GCTACCTGTCCCACCCGCCGGCGCCGATCCGCGCCCGTGGT
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