mRNA_Ecto-sp13_S_contig17453.5231.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17453.5231.1
Unique NamemRNA_Ecto-sp13_S_contig17453.5231.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17453.5231.1 vs. uniprot
Match: A0A6H5JN40_9PHAE (Importin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JN40_9PHAE)

HSP 1 Score: 430 bits (1105), Expect = 3.480e-141
Identity = 218/224 (97.32%), Postives = 219/224 (97.77%), Query Frame = 1
Query:    1 VVAALDLIIEKFQDHIAPHASALTHQLTRCFLEYASAGSDDDDAAMAASQVIEAVSTVLQSTKAVPELFPAMESHLLPMLAQVFSEDGDLMEYIENACDVLSFLTYYGAGISEQLWSVFPMLYRTWDKWAFDLISNMAVPIDNYISRGTDVFIAGRSAEGDRYIEMLLDMCGRVMKDERQSEKEARTAVQLTMVVLHNCKGRIDEYIPPILAMLSERVRTVSDG 672
            VVAALDLIIEKFQDHIAPHASALTHQLTRCFLEYASAGSDDDDAAMAASQVIEAVSTVLQSTKAVPELFPAMESHLLPMLAQVFSEDGDL+EYIENACDVLSFLTYYGAGISEQLWSVFPMLYRTWDKWAFDLISNMAVPIDNYISRGTDVFIAGRSAEGDRYIEMLLDMCGRVMKDERQSEKEARTAVQL MVVLHNCKGRIDEYIPPILAMLSERVRT    
Sbjct:  571 VVAALDLIIEKFQDHIAPHASALTHQLTRCFLEYASAGSDDDDAAMAASQVIEAVSTVLQSTKAVPELFPAMESHLLPMLAQVFSEDGDLIEYIENACDVLSFLTYYGAGISEQLWSVFPMLYRTWDKWAFDLISNMAVPIDNYISRGTDVFIAGRSAEGDRYIEMLLDMCGRVMKDERQSEKEARTAVQLMMVVLHNCKGRIDEYIPPILAMLSERVRTAEQA 794          
BLAST of mRNA_Ecto-sp13_S_contig17453.5231.1 vs. uniprot
Match: A0A6U2DQK1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2DQK1_9STRA)

HSP 1 Score: 201 bits (512), Expect = 1.240e-60
Identity = 103/230 (44.78%), Postives = 147/230 (63.91%), Query Frame = 1
Query:    1 VVAALDLIIEKFQDHIAPHASALTHQLTRCFLEYASAGSDDDDAAMAASQVIEAVSTVLQSTKAVPELFPAMESHLLPMLAQVFSEDGDLMEYIENACDVLSFLTYYGAGISEQLWSVFPMLYRTWDKWAFDLISNMAVPIDNYISRGTDVFIAGRSAEGD----RYIEMLLDMCGRVMKDERQSEKEARTAVQLTMVVLHNCKGRIDEYIPP----ILAMLSERVRTVS 666
            VVAAL +II++F DHI PHA+AL  QL   F  Y  AG +DDDAAMAA+Q +E V+TVL+     PEL+ +ME  L+P+  Q+   DG+ +EY+E A D+L+FLTY+   IS QLW  FP++Y  +D+WAFD ++ M  P++N+I +    F+ G +   D     YI+++  M  + + +ER SE E R AV L M VLHNC+G +D Y+P     +LA L ++V   S
Sbjct:   42 VVAALQVIIDRFGDHIEPHAAALVTQLAAAFRTYCGAGEEDDDAAMAAAQCLECVATVLKGICERPELYKSMEPQLVPLCLQILGNDGEYIEYLEYALDILTFLTYFPDEISPQLWEAFPLIYVAFDQWAFDYLNLMVPPLENFIGKSPRQFLQGTATTPDGATVSYIDLVFSMVAKTVAEERSSESECRKAVSLYMSVLHNCRGLVDAYLPMMNDIVLAKLGQQVNAES 271          
BLAST of mRNA_Ecto-sp13_S_contig17453.5231.1 vs. uniprot
Match: A0A7S4RDK4_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RDK4_9STRA)

HSP 1 Score: 203 bits (517), Expect = 1.950e-56
Identity = 101/225 (44.89%), Postives = 154/225 (68.44%), Query Frame = 1
Query:    1 VVAALDLIIEKFQDHIAPHASALTHQLTRCFLEYASAGSDDDDAAMAASQVIEAVSTVLQSTKAVPELFPAMESHLLPMLAQVFSEDGDLMEYIENACDVLSFLTYYGAGISEQLWSVFPMLYRTWDKWAFDLISNMAVPIDNYISRGTDVFIAGRSA--EGD-RYIEMLLDMCGRVMKDERQSEKEARTAVQLTMVVLHNCKGRIDEYIPPI----LAMLSERV 654
            VVAAL +II++F +HI PHA AL  QL+  FL Y  AG DDDDAAMAA+Q +E ++TVL+     PEL+  ME  L+P++ Q+   DG+ +EY+E A D+L+FLTY+   IS +LW  FP++Y  +D+WAFD ++ M  P++N+I +    F+AG ++  EG+ +YIE++  +  + + +ER SE E+R A+ L M +LHNC+G++D Y+P +    LA L ++V
Sbjct:  634 VVAALQVIIDQFGEHIEPHAVALVTQLSTAFLNYVGAGEDDDDAAMAAAQCLECIATVLKGICERPELYRTMEPQLIPLVLQILGNDGEYIEYLEYALDILTFLTYFPDHISPELWQAFPLIYIAFDQWAFDYLNLMVPPLENFIGKAPQQFLAGTASTPEGEVKYIELVFSIVAKTVAEERSSESESRKALSLYMSILHNCRGQVDLYLPMMNDIALAKLGQQV 858          
BLAST of mRNA_Ecto-sp13_S_contig17453.5231.1 vs. uniprot
Match: B8C038_THAPS (Ran binding protein 7 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C038_THAPS)

HSP 1 Score: 196 bits (499), Expect = 5.170e-54
Identity = 95/213 (44.60%), Postives = 141/213 (66.20%), Query Frame = 1
Query:    1 VVAALDLIIEKFQDHIAPHASALTHQLTRCFLEYASAGSDDDDAAMAASQVIEAVSTVLQSTKAVPELFPAMESHLLPMLAQVFSEDGDLMEYIENACDVLSFLTYYGAGISEQLWSVFPMLYRTWDKWAFDLISNMAVPIDNYISRGTDVFIAG--RSAEGDR-YIEMLLDMCGRVMKDERQSEKEARTAVQLTMVVLHNCKGRIDEYIPPI 630
            VVAAL +II+ F +HI PHA AL  QL+  F  Y  AG +DDDAAMAA+Q +E ++TVL+ T   PE++  ME HL+P++  +   DG+ +EY+E A D L+FLTY+   +S QLW  FP++Y  +D WAFD +  M  P++N+I++    F+ G   + EG   YI+M+  +  + ++++R SE EAR ++ L M VLHNC G++D Y+P I
Sbjct:  615 VVAALQVIIDTFGEHIEPHAVALVTQLSTAFANYIEAGEEDDDAAMAAAQCLECINTVLKGTCEHPEVYKGMEGHLIPLVLMILGHDGEYLEYVEFALDTLTFLTYFPLQLSPQLWEAFPLVYNAFDNWAFDYLVLMTPPLNNFIAKDPQHFLTGGGETTEGRMSYIDMIFSIVSKTVQEDRSSESEARKSLTLYMSVLHNCTGQVDSYLPTI 827          
BLAST of mRNA_Ecto-sp13_S_contig17453.5231.1 vs. uniprot
Match: A0A7S4MVL2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MVL2_9STRA)

HSP 1 Score: 196 bits (497), Expect = 6.790e-54
Identity = 99/226 (43.81%), Postives = 145/226 (64.16%), Query Frame = 1
Query:    1 VVAALDLIIEKFQDHIAPHASALTHQLTRCFLEYASAGSDDDDAAMAASQVIEAVSTVLQSTKAVPELFPAMESHLLPMLAQVFSEDGDLMEYIENACDVLSFLTYYGAGISEQLWSVFPMLYRTWDKWAFDLISNMAVPIDNYISRGTDVFIAGRSAEGD----RYIEMLLDMCGRVMKDERQSEKEARTAVQLTMVVLHNCKGRIDEYIPPI----LAMLSERV 654
            VVAAL +II++F DHI PHA AL  QL   F  Y  AG +DDDAA+AA+Q +E V+TVL+     PEL+ +ME  L+P+  Q+   DG+ +EY+E A D+L+FLTY+   IS +LW  FP++Y  +D+WAFD ++ M  P++N+I +    F+ G +   D     YI+++  M  + + +ER SE E R A+ L M VLHNC+G +D Y+P +    LA L ++V
Sbjct:  626 VVAALQVIIDRFGDHIEPHAVALVTQLATAFQNYCGAGEEDDDAALAAAQCLECVATVLKGICERPELYKSMEPQLVPLCLQILGNDGEYIEYLEYALDILTFLTYFPEEISPRLWEAFPLIYVAFDQWAFDYLNLMVPPLENFIGKSPTQFLQGTATTPDGTSVSYIDLVFSMVAKTVAEERSSEPECRKALSLYMSVLHNCRGLVDAYLPMMNDIALAKLGQQV 851          
BLAST of mRNA_Ecto-sp13_S_contig17453.5231.1 vs. uniprot
Match: A0A835YT27_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT27_9STRA)

HSP 1 Score: 192 bits (489), Expect = 1.150e-52
Identity = 97/232 (41.81%), Postives = 144/232 (62.07%), Query Frame = 1
Query:    1 VVAALDLIIEKFQDHIAPHASALTHQLTRCFLEYASAGSDDDDAAMAASQVIEAVSTVLQSTKAVPELFPAMESHLLPMLAQVFSEDGDLMEYIENACDVLSFLTYYGAGISEQLWSVFPMLYRTWDKWAFDLISNMAVPIDNYISRGTDVFIAGRSAEGDRYIEMLLDMCGR--------------VMKDERQSEKEARTAVQLTMVVLHNCKGRIDEYIPPILAMLSERV 654
            VV  L+ II+KF DHI PHA  L  +L+ CF+EYA  G +DDDAAMAA Q +EAV+TVL S    P L+PAME  L+PML  + S DG+ +EY ENA +V++      A +S  LWS FP+L+  +DKWA D ++N+  PI+N+ISR +  +  G + +G  Y+ ++++M                 V+ D+RQ+E E +   QL    LHNC+G +D ++P +L +++ R+
Sbjct:  574 VVQGLETIIDKFGDHIGPHALTLIQKLSDCFMEYAKEGYEDDDAAMAAGQCMEAVTTVLHSAHRTPNLYPAMEECLMPMLRTILSNDGEYIEYFENAVEVIA------AHVSPTLWSTFPLLFDAFDKWAADYVTNIRTPIENFISRDSKTYACGATPQGVPYVTLVVNMARAXXXXXXXXXXXXHAVLADQRQTEAEGKAVAQLLSSTLHNCRGLVDAHVPAVLDIVAARM 799          
BLAST of mRNA_Ecto-sp13_S_contig17453.5231.1 vs. uniprot
Match: A0A7S1VG73_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VG73_9STRA)

HSP 1 Score: 189 bits (479), Expect = 2.150e-52
Identity = 91/215 (42.33%), Postives = 149/215 (69.30%), Query Frame = 1
Query:    1 VVAALDLIIEKFQDHIAPHASALTHQLTRCFLEYASAGSD--DDDAAMAASQVIEAVSTVLQSTKAVPELFPAMESHLLPMLAQVFSEDGDLMEYIENACDVLSFLTYYGAGISEQLWSVFPMLYRTWDKWAFDLISNMAVPIDNYISRGTDVFIAGRS--AEG-DRYIEMLLDMCGRVMKDERQSEKEARTAVQLTMVVLHNCKGRIDEYIPPI 630
            VVAAL +II++F++HI PHA AL +QLT+ F +Y +AG D  DDDAAMAA+Q +E ++TVL+     PEL+ ++E  L+P++  +   DG+ +EY+E A D+L+FLTY+   I+ +LW  FP++Y+ +D+WA+D +S M  P+ ++I++  ++F+ G++   EG   YI+M+  M  + + ++R +E E R A+ L M +LH+C G+ID  +P I
Sbjct:  185 VVAALQVIIDQFENHIEPHAVALVNQLTQAFNQYCTAGEDEDDDDAAMAAAQCLECIATVLKGICEKPELYKSLEPTLIPLILTILGNDGNFIEYLECALDILTFLTYFPEEITPELWQAFPLIYQAFDQWAYDYLSLMVPPLQSFIAKNPNIFLTGQANLPEGPSTYIDMVFQMVAKTVANDRSTESEVRQALTLFMSILHSCPGQIDPLLPVI 399          
BLAST of mRNA_Ecto-sp13_S_contig17453.5231.1 vs. uniprot
Match: A0A7S3LFB3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LFB3_9STRA)

HSP 1 Score: 182 bits (463), Expect = 4.010e-51
Identity = 90/213 (42.25%), Postives = 144/213 (67.61%), Query Frame = 1
Query:    1 VVAALDLIIEKFQDHIAPHASALTHQLTRCFLEYASAGSD--DDDAAMAASQVIEAVSTVLQSTKAVPELFPAMESHLLPMLAQVFSEDGDLMEYIENACDVLSFLTYYGAGISEQLWSVFPMLYRTWDKWAFDLISNMAVPIDNYISRGTDVFIAGRS--AEGD-RYIEMLLDMCGRVMKDERQSEKEARTAVQLTMVVLHNCKGRIDEYIP 624
            VV+AL ++++KF DHI PHA AL  QL+  F +Y + G D  DDDAA+AA+Q +E ++TVL+       +   +E  LLP++ ++   DGD +EY+E+A D+LSFLTY+ + IS ++W  FP++Y  +D+WA+D ++ M   I +YIS+G DVF+AG +   EG   Y+++++ M  + + ++R SE E R A+ L M +L++C GRI+ Y+P
Sbjct:   55 VVSALQVLLDKFGDHIEPHAVALVTQLSNAFAQYCTTGEDQDDDDAALAAAQCLECIATVLKGVCGKESMIRVLEPMLLPLVLKILGNDGDFIEYLESALDILSFLTYFQSQISMEVWQCFPLIYMAFDQWAYDYLNMMVPCIQSYISKGPDVFLAGVAHLPEGQISYLDLVVSMVTKTLTNDRASEVECRFALSLFMTILNHCPGRINPYLP 267          
BLAST of mRNA_Ecto-sp13_S_contig17453.5231.1 vs. uniprot
Match: A0A7S3QJN0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJN0_9STRA)

HSP 1 Score: 187 bits (475), Expect = 8.840e-51
Identity = 98/234 (41.88%), Postives = 147/234 (62.82%), Query Frame = 1
Query:    1 VVAALDLIIEKFQDHIAPHASALTHQLTRCFLEYASAGSDDDDAAMAASQVIEAVSTVLQSTKAVPELFPAMESHLLPMLAQVFSEDGDLMEYIENACDVLSFLTYYGAGISEQLWSVFPMLYRTWDKWAFDLISNMAVPIDNYISRGTDVFIAGRSAEGDR---YIEMLLDMCGRVMK---------DERQSEKEARTAVQLTMVVLHNCKGRIDEYIPPI----LAMLSERV 654
            V+AAL  II++F DHI PHA AL  QLT  F  Y  AG DDDDA MAASQ +E ++TVL+     PEL+  +E  LLP++ ++ SEDGD +EYIE A ++L+FLTY+   IS +L+ +FP++Y  +D+WAFD +  M  P++N+I +   +F++ +    ++   Y++M+  M  + +          D+  S+ E R A+ L M +L NCKG +D Y+P I    LA L+E+V
Sbjct:  585 VIAALQSIIDRFGDHIEPHAIALVTQLTTAFNTYCDAGEDDDDALMAASQCLECIATVLKGIHERPELYRQLEPTLLPVIRRIISEDGDFIEYIEYALEILTFLTYFPEDISNELYDIFPLIYVAFDQWAFDYLGQMVPPVENFIGKNPSLFVSRQGVVSNQNMSYVDMVFSMITKTLTSTETYPGGFDDPSSDYEMRKALSLYMSLLLNCKGMLDNYLPSINDIVLAKLAEKV 818          
BLAST of mRNA_Ecto-sp13_S_contig17453.5231.1 vs. uniprot
Match: A0A1Z5JIW4_FISSO (Importin N-terminal domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIW4_FISSO)

HSP 1 Score: 181 bits (460), Expect = 9.510e-49
Identity = 93/231 (40.26%), Postives = 153/231 (66.23%), Query Frame = 1
Query:    1 VVAALDLIIEKFQDHIAPHASALTHQLTRCFLEYASAGSDDDD--AAMAASQVIEAVSTVLQSTKAVPELFPAMESHLLPMLAQVFSEDGDLMEYIENACDVLSFLTYYGAGISEQLWSVFPMLYRTWDKWAFDLISNMAVPIDNYISRGTDVFIAG--RSAEGD-RYIEMLLDMCGRVMKDERQSEKEARTAVQLTMVVLHNCKGRIDEYIP----PILAMLSERVRTVS 666
            VV+AL +++++F DHI PHA AL  QLT  F +Y +AG D+DD  AA+AA+Q +E V+TVL+   +   +  ++E  LLP++ ++   DGD +EY+E A D+L+FLT++   +S +LW  FP++Y  +D+WA+D ++ M   + +YI +G +VF++G  + AEG   Y++M++ M  + + ++  +E E R A+ L M VL+NC GR+D+YIP     +LA L ++V   S
Sbjct:  604 VVSALQVLLDRFGDHIEPHAIALVTQLTNTFQQYCTAGEDEDDXDAALAAAQCLECVATVLKGVCSNEHILKSLEPVLLPLVLKILGNDGDFLEYLECAFDILTFLTFFQENLSPELWQAFPLVYIAFDQWAYDYLNMMVPCLLSYIQKGPEVFLSGGFQLAEGHVSYVDMVISMASKTLANDSANESECRFALSLLMGVLNNCHGRVDQYIPFINEVVLAKLGQQVNEES 834          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17453.5231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JN40_9PHAE3.480e-14197.32Importin N-terminal domain-containing protein n=2 ... [more]
A0A6U2DQK1_9STRA1.240e-6044.78Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S4RDK4_9STRA1.950e-5644.89Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
B8C038_THAPS5.170e-5444.60Ran binding protein 7 n=1 Tax=Thalassiosira pseudo... [more]
A0A7S4MVL2_9STRA6.790e-5443.81Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A835YT27_9STRA1.150e-5241.81Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A7S1VG73_9STRA2.150e-5242.33Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S3LFB3_9STRA4.010e-5142.25Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A7S3QJN0_9STRA8.840e-5141.88Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A1Z5JIW4_FISSO9.510e-4940.26Importin N-terminal domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17453contigEcto-sp13_S_contig17453:58..3364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score431.0
Seed ortholog evalue3.6e-118
Seed eggNOG ortholog2880.D8LDH6
Preferred nameNMD5
Model size717
KEGG koko:K20223
KEGG TC1.I.1
KEGG Pathwayko04013,map04013
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005049,GO:0005215,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005829,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0008565,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016043,GO:0016441,GO:0016458,GO:0017038,GO:0017076,GO:0019001,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0023052,GO:0031047,GO:0031224,GO:0031503,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0034622,GO:0035194,GO:0035195,GO:0035280,GO:0035639,GO:0036094,GO:0040029,GO:0042886,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0061608,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070922,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0097159,GO:0097367,GO:0140104,GO:0140142,GO:1901265,GO:1901363
Exons5
EggNOG free text desc.Ran GTPase binding
EggNOG OGsCOG4581@1,KOG1991@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-16_000100.1
Cds size717
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462909.508076-CDS-Ecto-sp13_S_contig17453:57..1651681462909.508076-CDS-Ecto-sp13_S_contig17453:57..165Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17453 58..165 +
1681462909.5202718-CDS-Ecto-sp13_S_contig17453:1279..14171681462909.5202718-CDS-Ecto-sp13_S_contig17453:1279..1417Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17453 1280..1417 +
1681462909.530391-CDS-Ecto-sp13_S_contig17453:1652..17291681462909.530391-CDS-Ecto-sp13_S_contig17453:1652..1729Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17453 1653..1729 +
1681462909.5403259-CDS-Ecto-sp13_S_contig17453:2416..25781681462909.5403259-CDS-Ecto-sp13_S_contig17453:2416..2578Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17453 2417..2578 +
1681462909.549885-CDS-Ecto-sp13_S_contig17453:3132..33641681462909.549885-CDS-Ecto-sp13_S_contig17453:3132..3364Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17453 3133..3364 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17453.5231.1prot_Ecto-sp13_S_contig17453.5231.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17453 58..3364 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17453.5231.1

>prot_Ecto-sp13_S_contig17453.5231.1 ID=prot_Ecto-sp13_S_contig17453.5231.1|Name=mRNA_Ecto-sp13_S_contig17453.5231.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=239bp
VVAALDLIIEKFQDHIAPHASALTHQLTRCFLEYASAGSDDDDAAMAASQ
VIEAVSTVLQSTKAVPELFPAMESHLLPMLAQVFSEDGDLMEYIENACDV
LSFLTYYGAGISEQLWSVFPMLYRTWDKWAFDLISNMAVPIDNYISRGTD
VFIAGRSAEGDRYIEMLLDMCGRVMKDERQSEKEARTAVQLTMVVLHNCK
GRIDEYIPPILAMLSERVRTVSDGVMDLFSAFLLLVEAD
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mRNA from alignment at Ecto-sp13_S_contig17453:58..3364+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17453.5231.1 ID=mRNA_Ecto-sp13_S_contig17453.5231.1|Name=mRNA_Ecto-sp13_S_contig17453.5231.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3307bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17453:58..3364+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGTGGCGGCGTTGGACCTGATCATCGAGAAGTTCCAGGACCACATCGC ACCCCACGCCTCGGCGCTCACGCATCAGCTCACGAGATGTTTCTTGGAAT ATGCTTCGGTGAGTGAGGCCGGACGATGCACCCCAGACGCAGCGACGGGC GGCCACGAAACCGTGGGGCTTGGGTGAAAGAAGTGGCGTACAGCAAGGGT GCAATTTGTGGTTGTGGTCACTGTAGTCATCAACAAAGGAAGCGGGGATC ATGAAAGCGTCAGAGAGGTTGGGGTAAAACAAGGGTATGGTGGTTTTGTC AGTGTTTTCATCAACAAGAGACAAGGGGTCATGAAACCATCAGATAAGTT GGGTACAAACATTCGCCCGTCTGGTTGGTTTAGTTATCAACGATGCACGT CCATGTAATCACCTCTGGAAAGCCTTGCTTGCTACAGCACGTTCGGGTGC AGCAGCTACGCTTCGTCAGAGACCGGAAGAGAAATAAGTTGACTCAAGAC CGTGTATCATGAATAATAACGGGCATCGCGCGTCATGCCCATCATACCCA TATCATGATCCTCGTGTCCCCCCGGAGGCCCCTTAGATTCAGTACTCTGC CGAGCACCCCCGGACAAGCACGGCCTCTTTTTTTAAAACTCAAAGTGTAC ATTCACCAAAGGGTGAGCCGTCATAATCCGTAGTATTGTTGGTCTTGAAG TCACCGACCGTCTTACGTCATGTGGCCGAGGGCGATGGCGCTGCTCTCTC ATCCGGCCAATCAACGATTTCACTAATCAAAACTCGGTATTTTCTCCCCA CCAGTCAGTGGAGGGGCCTCATTGTCGATCCTTCACCAATCGCCCGACAG CATGTGAACCTGGTCAACTGGTGGTATTACATGATCGTTAGAGTTTCTGA CGACGTGTTTGATCTAGTCGAACCCGTCAAGAATTGTGCATATACCTGAT CGCGTGAGAACCGATCAGCGGTCCAAAAGAGATACGTTTTGAGTGAAACA ATGCGCGATATCGATGTAGTATCACAAGAACAGCCGATAGCGTGTGGAAC GAATTGTGACACGGAAGAACTTCCCTCTTGGAGATCCAGTTGTCGGAAAC ACGCCATCAAGATATCGACGCACCACAAGTACAATTAACCGGTGGCTTGT TTTGTAGGAAATGTAACAAAAACTCTTCCTTGTTGATGCAATGAAAATCT CGGGAACACACACACACGGCAGGCGGGTAGCGACGACGATGATGCGGCGA TGGCGGCGAGTCAAGTCATCGAGGCCGTTTCTACCGTGCTGCAGAGCACC AAGGCAGTGCCGGAGCTCTTCCCGGCCATGGAGTCGCACCTCTTGCCTAT GCTTGCGCAGGTCCGTGCATACGTGTGCCATCGCAGAGTAGGAGCTTACG CACTGCTGTACATGTCGATGGTCGAAAAGAGATGTGTTGCGCGCAAATGT TCGTTTTCTTGTTTTTTTTGTTTGTGTGGCTTTATTTTGTGTTGTCGCAC GCCTCTTTGCCTTGTCGCAGGTGTAGAAATGCAAGCAACACACGAGAGTA CGCTAGATGACACCGTTCCCGCGCTCCGATCGTGTTTTATGGAAGGTTTT CTCGGAAGATGGAGATTTGATGGAGTACATCGAGAACGCCTGCGACGTCC TCAGCTTCCTCACGTACTACGGGTGAGGCTTCGCGTTGGACACCTGTTGT TCTCTGTAATCGGCCTGTGTGTGGCGTGTCGGTCGTACAAGTATGCCCTT TTTTGCCATACGAAATCGCAACTTTTGAGTTTGATGAAGGTCGCCCTTCG GTCATCTGTTGTAGAGGCTGTACTTGTATGTACCTCGGACGCCATTCTCT TTGTCGGAACTGTTGTTATTTTTTTAGACAACGTCCGCACCAATTGGTGT TTGCTCACGTTTGTGGCAAGTTATGTGTTTTTTTTCGTGTCAGAGATGTC AACGAACGTGCGTGATTGATAGCTCCGGTTTGTGTGAGGCGAGGGTTGTG CTCGGCAGTTGTTTTTGCTGAATGTTGACGTGTCTACGTCAGAGCCAGTC CTGTCCTCGAAATCAGTGTTCGGCATTTGATTTTCACGCTGAAGCGTGGT CTCAGCCATGTACATGCATGCGTGTGATGGCGCCGGTGCACTACTCGTCA ACATCCCCTTTCTCGCTCCTTTGCGCCGCACCTTCTTTTGCCCCCCGGGT ATACGCCGTCCCTGTGCCGGTGTACTATTTACGAACATCCCCCAAATCTT CCCTTGTCTTCCCGCTTTGCGCGGTACGTTCTGCTGTCCCCCCGCTTTGC GTCGCACCTTCCTGTGGCCCCCGCTTCGCGCGTCACTCTGGCGTGTCCCA AAACTTCAGGGCCGGCATCAGCGAGCAGCTGTGGAGCGTTTTCCCGATGC TTTACCGCACCTGGGACAAGTGGGCCTTCGATCTCATCTCCAACATGGCC GTGCCGATAGACAACTACATCAGCCGTGGCACAGACGTCTTCATTGCCGG GAGAAGTGCCGAGGGCGACAGGTGATTTTGCGGCTCCAAACGATGTTGTT GTTGGTGTGGTCGTTAGACTGAAAGTGTGGGGGAATGCGCAGGCCAAGGC ACAATCGAGGGCAACAGGCGATTTTGCGGCTCCAAGATCGTTGGACTTTT TTGTGGAGGAATGCTCAGGCCATTTGGTACAGTCAAGGGCATATGCCTTT TGCCAAAATCTCAGAACGCCGGACCGGCGTGTGGTTCGTGTTTGTTGAAG GGAGTCCCATGTATTTTGTGCTGGAGGCGATGAAGGTGATGTTATCGATA GAGGTAGAGGTGGTGTTTGTGGGTCTTGGGGGTTTGGGACATGTTCGGCA AAGCTTTTCTCTGCATCTCAGGGCCGTTGTAAACAGCAGCTACTTTCCGT CAGAATTTCCAGATCCGTAGACCAGGGATCCTCGATTCGCGTCTAAGGAC TTTTTTTTGGGATTTTTGGCAACTGCTGTCACCGAAAACTTTGGAACGAC ATTGGAAATCTGGAAGTCGGAACTTTGGAAATTTGGAAGGAAAACAGTTA CGTTTGAATCGACCGACGCCGACAGGTACATCGAAATGTTGCTAGACATG TGCGGGCGCGTGATGAAGGACGAGCGGCAATCGGAGAAGGAGGCCAGGAC TGCGGTGCAGCTGACGATGGTTGTGCTCCACAACTGCAAGGGCAGGATCG ACGAGTATATTCCCCCCATCCTCGCGATGCTCAGCGAGCGCGTACGGACG GTTAGTGACGGGGTGATGGACCTTTTTTCCGCCTTCTTGCTGTTGGTTGA GGCAGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17453:58..3364+

>mRNA_Ecto-sp13_S_contig17453.5231.1 ID=mRNA_Ecto-sp13_S_contig17453.5231.1|Name=mRNA_Ecto-sp13_S_contig17453.5231.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=717bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17453:58..3364+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGTGGCGGCGTTGGACCTGATCATCGAGAAGTTCCAGGACCACATCGC
ACCCCACGCCTCGGCGCTCACGCATCAGCTCACGAGATGTTTCTTGGAAT
ATGCTTCGGCGGGTAGCGACGACGATGATGCGGCGATGGCGGCGAGTCAA
GTCATCGAGGCCGTTTCTACCGTGCTGCAGAGCACCAAGGCAGTGCCGGA
GCTCTTCCCGGCCATGGAGTCGCACCTCTTGCCTATGCTTGCGCAGGTTT
TCTCGGAAGATGGAGATTTGATGGAGTACATCGAGAACGCCTGCGACGTC
CTCAGCTTCCTCACGTACTACGGGGCCGGCATCAGCGAGCAGCTGTGGAG
CGTTTTCCCGATGCTTTACCGCACCTGGGACAAGTGGGCCTTCGATCTCA
TCTCCAACATGGCCGTGCCGATAGACAACTACATCAGCCGTGGCACAGAC
GTCTTCATTGCCGGGAGAAGTGCCGAGGGCGACAGGTACATCGAAATGTT
GCTAGACATGTGCGGGCGCGTGATGAAGGACGAGCGGCAATCGGAGAAGG
AGGCCAGGACTGCGGTGCAGCTGACGATGGTTGTGCTCCACAACTGCAAG
GGCAGGATCGACGAGTATATTCCCCCCATCCTCGCGATGCTCAGCGAGCG
CGTACGGACGGTTAGTGACGGGGTGATGGACCTTTTTTCCGCCTTCTTGC
TGTTGGTTGAGGCAGAC
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