mRNA_Ecto-sp13_S_contig1745.5229.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1745.5229.1
Unique NamemRNA_Ecto-sp13_S_contig1745.5229.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1745.5229.1 vs. uniprot
Match: A0A7S2NI17_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2NI17_9EUKA)

HSP 1 Score: 55.8 bits (133), Expect = 4.910e-7
Identity = 25/37 (67.57%), Postives = 28/37 (75.68%), Query Frame = 3 
Query:  318 EQCAQEGRREESCSCSEGNPCAVAYHCRDWPNRFEVA 428
            E   Q+G + ESCSC EGNPCA AY C+DW NRFEVA
Sbjct:   60 ESTIQKGPKMESCSCIEGNPCADAYCCKDWKNRFEVA 96
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BLAST of mRNA_Ecto-sp13_S_contig1745.5229.1 vs. uniprot
Match: A0A0M0JF58_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JF58_9EUKA)

HSP 1 Score: 54.7 bits (130), Expect = 9.530e-6
Identity = 23/31 (74.19%), Postives = 26/31 (83.87%), Query Frame = 3 
Query:  336 GRREESCSCSEGNPCAVAYHCRDWPNRFEVA 428
            G++ ESCSC EGNPCA AY C+DW NRFEVA
Sbjct:  193 GKKMESCSCIEGNPCADAYCCKDWRNRFEVA 223
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BLAST of mRNA_Ecto-sp13_S_contig1745.5229.1 vs. uniprot
Match: A0A2R5GQ10_9STRA (Malignant fibrous histiocytoma-amplified sequence 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GQ10_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 3.780e-5
Identity = 20/29 (68.97%), Postives = 23/29 (79.31%), Query Frame = 3 
Query:  351 SCSCSEGNPCAVAYHCRDWPNRFEVAAAA 437
            SCSC EGNPCAV Y+C+DW NR E+A  A
Sbjct:  143 SCSCIEGNPCAVPYNCKDWENRIEIARRA 171
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1745.5229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S2NI17_9EUKA4.910e-767.57Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A0M0JF58_9EUKA9.530e-674.19Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
A0A2R5GQ10_9STRA3.780e-568.97Malignant fibrous histiocytoma-amplified sequence ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1745contigEcto-sp13_S_contig1745:1701..3178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size558
Hectar predicted targeting categoryother localisation
Exons2
Cds size558
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462909.3252392-CDS-Ecto-sp13_S_contig1745:1700..20151681462909.3252392-CDS-Ecto-sp13_S_contig1745:1700..2015Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1745 1701..2015 +
1681462909.3384123-CDS-Ecto-sp13_S_contig1745:2935..31781681462909.3384123-CDS-Ecto-sp13_S_contig1745:2935..3178Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1745 2936..3178 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1745.5229.1prot_Ecto-sp13_S_contig1745.5229.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1745 1701..3178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1745.5229.1

>prot_Ecto-sp13_S_contig1745.5229.1 ID=prot_Ecto-sp13_S_contig1745.5229.1|Name=mRNA_Ecto-sp13_S_contig1745.5229.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=186bp
MCCTRLKRLDVSAADDPEAAQATVPQHQTVASVPASSSLTSPLHVLTSLV
DLNLANNELGSQNGDGRDVLETFTKTGFPRLTSLDLRNNFPSEGELQDEL
LRITTGSSAHRRGEGKRAAAARKETHARWRTTAVTGLTDLRLLRLLLPLL
EEGVAARRDRHNSVVQGDDRARPKFHKHDAIRTVER
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mRNA from alignment at Ecto-sp13_S_contig1745:1701..3178+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1745.5229.1 ID=mRNA_Ecto-sp13_S_contig1745.5229.1|Name=mRNA_Ecto-sp13_S_contig1745.5229.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1478bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1745:1701..3178+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTTGTACCAGGCTAAAGCGACTGGACGTCTCCGCAGCAGACGATCC
CGAAGCCGCACAAGCGACCGTACCGCAACATCAAACGGTTGCGAGTGTCC
CTGCTAGCAGCAGCCTGACGAGCCCCCTCCATGTCCTGACGTCTCTGGTC
GACCTCAACCTTGCCAACAACGAGCTTGGTTCTCAAAACGGAGACGGTCG
TGATGTGCTGGAGACGTTTACGAAAACGGGGTTCCCTCGTCTGACAAGCC
TTGACCTGCGGAACAACTTTCCTTCCGAGGGCGAGCTCCAAGACGAGCTT
CTGAGAATAACCACGGTGAGATACCGGTGCCATACCAGCAAACCGGAGAT
GCCCTACTCTGGAAGAAGAGTTATTTCGAAACCAGGAATTCAATGCAATC
CTCACTGCGTTGCTGCACGGGAAGAGGTGCAGTCAACTGTCGCAACACAG
TCTCCTCCCACCACATGAATCGGTCTGTTTCAAACGACGTTGTACCCCTC
TGTGATGGGAAAGGTATCGACAAGGGGTCGCCTATCGTATGAAAGTCCTC
GATAATAGATTGGTTCCAAACCTCATCTTCGTTGTTACTGTAGCGCCTAC
CCATCGTCGGAGTAGTCCAGGAACTTGGACACACCGCCAGCGGATATTAT
ACGGTGAATACAGGTGGCAGACGATTTTCCCGCGACGACAAGCGTTTGAC
GTTAAGATCTGTCTCTTCGCTCCCTTTCCGATTTCGAACGTACCTTGTTG
ATGTGCGATGCGTGCTGTAGCGCTTGCCAACCCTCAAAACCCTGAATGGC
GAAAAGGTGTCAAGAACGGCGATGGTGCATTCCTCGAAACAGCCCATGTT
CGAGCTTCTCTGCACGGGTAAGAGCGTTTCCAAAGATCATCCGTTTACCG
GTCAGAAACGGCTTCGGTGAAGGGCCGCACAGACCTACCACTGCTGTATA
ACAAAAACAACGCGGGAACAGATTTCCAAGGGCCACTAAAGGGCGTAGCT
CCGATGCCAGCGCTACTACTGGTGGAGGCACCAACTACAGCGACTCACCT
AGCAGCGTGTTAATTGTGGTAGACACGCGGCAGATAAAACGGATTCGTTG
GCGGTTCATCATGTGTCAGATGGTGCATTCCAATCTTGTCTTGTTGTTCC
TCGTGTTTTTGATGTTGAGAGGCGACATTGCAAAGCCGGCCCGTGTCTTT
CCGTCGTTCCCACCGAATCTTACGCGTATCTATAGGGGAGCAGTGCGCAC
AGGAGGGGAGAAGGGAAGAGAGCTGCAGCTGCTCGGAAGGAAACCCATGC
GCGGTGGCGTACCACTGCCGTGACTGGCCTAACAGATTTGAGGTTGCTGC
GGCTGCTACTTCCGCTTCTCGAGGAGGGAGTAGCTGCAAGACGTGATCGA
CATAATAGTGTCGTTCAAGGCGATGACCGAGCCCGACCAAAGTTCCACAA
GCATGATGCGATACGTACAGTGGAAAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1745:1701..3178+

>mRNA_Ecto-sp13_S_contig1745.5229.1 ID=mRNA_Ecto-sp13_S_contig1745.5229.1|Name=mRNA_Ecto-sp13_S_contig1745.5229.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=558bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1745:1701..3178+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTTGTACCAGGCTAAAGCGACTGGACGTCTCCGCAGCAGACGATCC
CGAAGCCGCACAAGCGACCGTACCGCAACATCAAACGGTTGCGAGTGTCC
CTGCTAGCAGCAGCCTGACGAGCCCCCTCCATGTCCTGACGTCTCTGGTC
GACCTCAACCTTGCCAACAACGAGCTTGGTTCTCAAAACGGAGACGGTCG
TGATGTGCTGGAGACGTTTACGAAAACGGGGTTCCCTCGTCTGACAAGCC
TTGACCTGCGGAACAACTTTCCTTCCGAGGGCGAGCTCCAAGACGAGCTT
CTGAGAATAACCACGGGGAGCAGTGCGCACAGGAGGGGAGAAGGGAAGAG
AGCTGCAGCTGCTCGGAAGGAAACCCATGCGCGGTGGCGTACCACTGCCG
TGACTGGCCTAACAGATTTGAGGTTGCTGCGGCTGCTACTTCCGCTTCTC
GAGGAGGGAGTAGCTGCAAGACGTGATCGACATAATAGTGTCGTTCAAGG
CGATGACCGAGCCCGACCAAAGTTCCACAAGCATGATGCGATACGTACAG
TGGAAAGA
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