mRNA_Ecto-sp13_S_contig17430.5222.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17430.5222.1
Unique NamemRNA_Ecto-sp13_S_contig17430.5222.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17430.5222.1 vs. uniprot
Match: A0A6H5JIE6_9PHAE (C2H2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIE6_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 3.340e-59
Identity = 103/125 (82.40%), Postives = 103/125 (82.40%), Query Frame = 1 
Query:    1 VDDDLPGQGQFYCTPCARHFTDQQTKSTHIRSKLHKRRMKDVAQEQYTQAEAERGAGMTKEAYPPAHPVTSSPAAAATVPPPDSRVLAVGGVEATGKAGAEVATRTGASGMDVTGGGEDEDDPDL 375
            VDDDLPGQGQFYCTPCARHFTDQQTKSTHIRSKLHKRRMKDVAQEQYTQAEAERGAGMTKE                    PDSRVLAVGG EATGKAGAEVAT TGASGMDVTGGGEDEDDPDL
Sbjct:   56 VDDDLPGQGQFYCTPCARHFTDQQTKSTHIRSKLHKRRMKDVAQEQYTQAEAERGAGMTKETXXXXXXXXXXXXXXXXXXXPDSRVLAVGGAEATGKAGAEVATTTGASGMDVTGGGEDEDDPDL 180
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17430.5222.1 vs. uniprot
Match: A0A836CC06_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC06_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.540e-26
Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:    4 DDDLPGQGQFYCTPCARHFTDQQTKSTHIRSKLHKRRMKDVAQEQYTQAEAERGAGMTKEAYPPAHP 204
            DDDLPG GQFYC PCARHFTDQ T  TH +SKLHKRR+KDVAQ++YTQ EA+ GAG +KE Y PAHP
Sbjct:   57 DDDLPGGGQFYCAPCARHFTDQGTLDTHTKSKLHKRRLKDVAQKKYTQKEADAGAGKSKEVYAPAHP 123
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17430.5222.1 vs. uniprot
Match: A0A024G9F2_9STRA (C2H2-type domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G9F2_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.390e-25
Identity = 46/72 (63.89%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:    1 VDDDLPGQGQFYCTPCARHFTDQQTKSTHIRSKLHKRRMKDVAQEQYTQAEAERGAGMTKEAYPPAHPVTSS 216
            +D+DLPG GQ+YCTPCARHF D  T+  H+R+K+HKRR+KDV QEQYTQ EA+ GAG T+E Y PAHP  ++
Sbjct:   52 IDEDLPGLGQYYCTPCARHFIDATTRDLHVRTKVHKRRLKDVRQEQYTQREADLGAGKTREEYVPAHPTEAT 123
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17430.5222.1 vs. uniprot
Match: A0A4D9CVU1_9STRA (C2H2-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVU1_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.770e-25
Identity = 50/66 (75.76%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    4 DDDLPGQGQFYCTPCARHFTDQQTKSTHIRSKLHKRRMKDVAQEQYTQAEAERGAGMTKEAYPPAH 201
            DDDLPG GQFYC PCARHF DQQ    H RSK+HKRR+KDVAQEQYTQ EAER  GMT+E  PPAH
Sbjct:   58 DDDLPGAGQFYCRPCARHFGDQQCLDHHTRSKVHKRRLKDVAQEQYTQREAERAGGMTEEVLPPAH 123
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17430.5222.1 vs. uniprot
Match: A0A024UJ99_9STRA (C2H2-type domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UJ99_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.940e-24
Identity = 47/72 (65.28%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:    1 VDDDLPGQGQFYCTPCARHFTDQQTKSTHIRSKLHKRRMKDVAQEQYTQAEAERGAGMTKEAYPPAHPVTSS 216
            +D+DLPG GQ+YCTPC RHF     +  HI SK+HKRRMKDVAQEQYTQ EAER AG + E Y PAHP  +S
Sbjct:   52 LDEDLPGLGQYYCTPCGRHFITANARDVHIASKVHKRRMKDVAQEQYTQKEAERAAGKSIETYTPAHPTAAS 123
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17430.5222.1 vs. uniprot
Match: A0A8K1FHU3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHU3_PYTOL)

HSP 1 Score: 99.0 bits (245), Expect = 3.200e-24
Identity = 47/65 (72.31%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:    1 VDDDLPGQGQFYCTPCARHFTDQQTKSTHIRSKLHKRRMKDVAQEQYTQAEAERGAGMTKEAYPP 195
            VD+DLPG GQ+YCTPC RHF D +T+  HI+ KLHKRRMKDVAQEQYTQAEAE GAG + E Y P
Sbjct:   52 VDEDLPGLGQYYCTPCGRHFIDAKTRDVHIKGKLHKRRMKDVAQEQYTQAEAEAGAGRSVEKYVP 116
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17430.5222.1 vs. uniprot
Match: F0WBU9_9STRA (Uncharacterized protein AlNc14C53G4140 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WBU9_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.830e-23
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    1 VDDDLPGQGQFYCTPCARHFTDQQTKSTHIRSKLHKRRMKDVAQEQYTQAEAERGAGMTKEAYPPAHP 204
            +D+DLPG GQ+YCTPCARHF D  T+  HIR+K+HKRR+KDV QEQYTQ EA+ GAG T+E Y  A P
Sbjct:   52 IDEDLPGLGQYYCTPCARHFIDASTRELHIRTKVHKRRLKDVLQEQYTQREADLGAGKTREQYEAARP 119
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17430.5222.1 vs. uniprot
Match: A0A662Y0F3_9STRA (C2H2-type domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y0F3_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.930e-23
Identity = 46/67 (68.66%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:    4 DDDLPGQGQFYCTPCARHFTDQQTKSTHIRSKLHKRRMKDVAQEQYTQAEAERGAGMTKEAYPPAHP 204
            D+DLPG GQFYCTPC RHF D  T+  HI++K+HKRR+KDVAQ+QYTQ EA  GAG T E Y PAHP
Sbjct:   54 DEDLPGLGQFYCTPCGRHFIDAITRDVHIKTKVHKRRLKDVAQKQYTQKEAMLGAGKTVETYTPAHP 120
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17430.5222.1 vs. uniprot
Match: W2FRC2_PHYPR (C2H2-type domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2FRC2_PHYPR)

HSP 1 Score: 95.9 bits (237), Expect = 5.630e-23
Identity = 44/67 (65.67%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    4 DDDLPGQGQFYCTPCARHFTDQQTKSTHIRSKLHKRRMKDVAQEQYTQAEAERGAGMTKEAYPPAHP 204
            D+DLPG GQFYCTPC RHF D +T+  H+++K+HKRR+KDVAQ+QYTQ EA +GAG   E Y PAHP
Sbjct:   55 DEDLPGLGQFYCTPCGRHFIDAKTRDVHLKTKVHKRRLKDVAQKQYTQNEAMQGAGKGVETYKPAHP 121
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17430.5222.1 vs. uniprot
Match: K3X4G9_GLOUD (ELMO domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4G9_GLOUD)

HSP 1 Score: 102 bits (253), Expect = 5.740e-23
Identity = 49/70 (70.00%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:    4 DDDLPGQGQFYCTPCARHFTDQQTKSTHIRSKLHKRRMKDVAQEQYTQAEAERGAGMTKEAYPPAHPVTS 213
            D+DLPG GQFYCTPCARHF D  T+  H+++K+HKRRMKDVAQ+QYTQ EAE GAG T E Y PAHP  S
Sbjct:  368 DEDLPGLGQFYCTPCARHFIDAVTRDVHLKTKVHKRRMKDVAQKQYTQKEAELGAGKTVEKYTPAHPKES 437
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17430.5222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIE6_9PHAE3.340e-5982.40C2H2-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A836CC06_9STRA1.540e-2674.63C2H2-type domain-containing protein n=1 Tax=Tribon... [more]
A0A024G9F2_9STRA1.390e-2563.89C2H2-type domain-containing protein n=1 Tax=Albugo... [more]
A0A4D9CVU1_9STRA4.770e-2575.76C2H2-type domain-containing protein n=1 Tax=Nannoc... [more]
A0A024UJ99_9STRA2.940e-2465.28C2H2-type domain-containing protein n=1 Tax=Aphano... [more]
A0A8K1FHU3_PYTOL3.200e-2472.31Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0WBU9_9STRA1.830e-2366.18Uncharacterized protein AlNc14C53G4140 n=1 Tax=Alb... [more]
A0A662Y0F3_9STRA1.930e-2368.66C2H2-type domain-containing protein n=1 Tax=Nothop... [more]
W2FRC2_PHYPR5.630e-2365.67C2H2-type domain-containing protein n=9 Tax=Phytop... [more]
K3X4G9_GLOUD5.740e-2370.00ELMO domain-containing protein n=1 Tax=Globisporan... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17430contigEcto-sp13_S_contig17430:2406..3687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score219.2
Seed ortholog evalue1.1e-54
Seed eggNOG ortholog2880.D7FMT7
Preferred nameZNF593
Model size378
KEGG rclassRC00055,RC00523
KEGG koko:K01875,ko:K14821
KEGG ReactionR03662,R08218
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000054,GO:0000055,GO:0000278,GO:0000281,GO:0000282,GO:0000910,GO:0000981,GO:0003674,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006355,GO:0006357,GO:0006403,GO:0006405,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0007049,GO:0007163,GO:0008104,GO:0008150,GO:0008270,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0015031,GO:0015833,GO:0015931,GO:0019219,GO:0019222,GO:0022402,GO:0022613,GO:0030010,GO:0030684,GO:0030687,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031503,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033750,GO:0034613,GO:0042254,GO:0042886,GO:0043021,GO:0043023,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043392,GO:0044085,GO:0044092,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0045893,GO:0045935,GO:0045944,GO:0046872,GO:0046907,GO:0046914,GO:0048518,GO:0048522,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051098,GO:0051100,GO:0051101,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051254,GO:0051301,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060255,GO:0061640,GO:0065007,GO:0065009,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071705,GO:0071840,GO:0080090,GO:0140110,GO:1902680,GO:1903025,GO:1903026,GO:1903047,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2000677,GO:2000678,GO:2001141
Exons2
EggNOG free text desc.ribosomal large subunit binding
EggNOG OGsCOG5112@1,KOG3408@2759
Ec32 ortholog descriptionU1 zinc finger protein
Ec32 orthologEc-21_000210.1
EC6.1.1.11
Cds size378
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03009,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462908.9415123-CDS-Ecto-sp13_S_contig17430:2405..26701681462908.9415123-CDS-Ecto-sp13_S_contig17430:2405..2670Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17430 2406..2670 -
1681462908.9525943-CDS-Ecto-sp13_S_contig17430:3574..36871681462908.9525943-CDS-Ecto-sp13_S_contig17430:3574..3687Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17430 3575..3687 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17430.5222.1prot_Ecto-sp13_S_contig17430.5222.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17430 2406..3687 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17430.5222.1

>prot_Ecto-sp13_S_contig17430.5222.1 ID=prot_Ecto-sp13_S_contig17430.5222.1|Name=mRNA_Ecto-sp13_S_contig17430.5222.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
VDDDLPGQGQFYCTPCARHFTDQQTKSTHIRSKLHKRRMKDVAQEQYTQA
EAERGAGMTKEAYPPAHPVTSSPAAAATVPPPDSRVLAVGGVEATGKAGA
EVATRTGASGMDVTGGGEDEDDPDL*
back to top

mRNA from alignment at Ecto-sp13_S_contig17430:2406..3687-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17430.5222.1 ID=mRNA_Ecto-sp13_S_contig17430.5222.1|Name=mRNA_Ecto-sp13_S_contig17430.5222.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1282bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17430:2406..3687- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGACGATGACCTCCCTGGGCAGGGACAATTCTACTGCACACCCTGCGC
GCGCCACTTCACCGACCAACAAACGAAGTCCACGCACATCAGGTCCAAGC
TGCACAAGCGGAGGTGAGCCCTGAGGGGAGGGTTGGGGTTAGGGATAACA
AGGGAGAAACCAAGACACTCGGTTGCCACCTACCAGCGACGTTTGTAACG
GATGGAGATATACACCATTCCATCGTGTCGATATATGGAAGAGAAAAATA
CGTCAGGGCAAGGGAGAGTGGTGAAAAAAAAATCCTGAGAATCGTTGGTT
TGAGCTGCAACACCTTCGGCGATTGCTACTTGTGCCCCGTAGTACAAGAG
GAGTGCACGCGATTTCAGTAGTCCTATCGTGAACGGCGCATTATGACGTT
GGCTGTCCTGTGAGGCGTCATCAAATCTTCTTCTTTCCCATGGAACGAAA
CGGTCGTTGACCGGTGTTTTCGGCGCGAGATTGCTAAACATCTTGCCGTG
ACTTGTATTGTTTTGTTTTCATGTATTTGTTATTCGACGCCCATCACACC
TTTGCTATGTCACCGCCCGCATGTTGCTGTTGGCCACCTTCTGCCGCTGA
GTTTGGTAGTGGTAGTCCACAATGTTTGCGGACTGATTAATGTAAACTAG
AAGCTTGCGGGCGTCTTCGTGTAGGTTTTATGTAGTTCAGGCAACGAATT
GCTTCGCTTATGTCCCAACTCAGCAGCTTCAATGCTGTGAACCAGGCAGC
CTCCCTCCATGTACACGAAACCAGTTGGTAGCTGATTTGAGTTGGAAGAA
AATTGTCGCGTATTGTCCGTCAGTATTATTTTGCCCATGTGGGCATCCCT
GCCCCTATTAAGCACCGCTGTGTTGTGGAATTGCCCCTCCTTGGAGTATG
AAGAGATTTTTGTCGCAGCTGCGGGCGGTCCACGGTGAAACAACAGCTCA
TCCAAGCAACAAATCGACCCCACCACCCCAACCACCACCCCTTCTCCGCC
CCGTCCATATCCCTTAGGATGAAAGACGTAGCTCAGGAGCAGTACACACA
GGCGGAGGCAGAGCGCGGAGCCGGCATGACGAAGGAAGCGTACCCGCCAG
CACATCCAGTAACAAGCTCACCCGCCGCCGCAGCAACAGTACCACCACCG
GACTCGCGGGTGCTGGCAGTAGGGGGAGTAGAGGCTACAGGGAAGGCTGG
AGCGGAGGTGGCGACAAGAACGGGAGCGTCGGGAATGGATGTCACGGGAG
GGGGAGAGGATGAGGATGACCCCGATCTTTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17430:2406..3687-

>mRNA_Ecto-sp13_S_contig17430.5222.1 ID=mRNA_Ecto-sp13_S_contig17430.5222.1|Name=mRNA_Ecto-sp13_S_contig17430.5222.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17430:2406..3687- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGACGATGACCTCCCTGGGCAGGGACAATTCTACTGCACACCCTGCGC
GCGCCACTTCACCGACCAACAAACGAAGTCCACGCACATCAGGTCCAAGC
TGCACAAGCGGAGGATGAAAGACGTAGCTCAGGAGCAGTACACACAGGCG
GAGGCAGAGCGCGGAGCCGGCATGACGAAGGAAGCGTACCCGCCAGCACA
TCCAGTAACAAGCTCACCCGCCGCCGCAGCAACAGTACCACCACCGGACT
CGCGGGTGCTGGCAGTAGGGGGAGTAGAGGCTACAGGGAAGGCTGGAGCG
GAGGTGGCGACAAGAACGGGAGCGTCGGGAATGGATGTCACGGGAGGGGG
AGAGGATGAGGATGACCCCGATCTTTGA
back to top