mRNA_Ecto-sp13_S_contig1743.5220.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1743.5220.1
Unique NamemRNA_Ecto-sp13_S_contig1743.5220.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1743.5220.1 vs. uniprot
Match: A0A6H5KGA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGA9_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 1.570e-5
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = -2 
Query:  277 GLHLPKECSKKWYPDMETIAFDQVVST 357
            GLH PKECS+KWY DMET AFDQVVST
Sbjct:  248 GLHRPKECSEKWYSDMETTAFDQVVST 274
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1743.5220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KGA9_9PHAE1.570e-585.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1743contigEcto-sp13_S_contig1743:3083..3506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size426
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_004820.1
Cds size123
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462908.8126078-UTR-Ecto-sp13_S_contig1743:3082..33831681462908.8126078-UTR-Ecto-sp13_S_contig1743:3082..3383Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1743 3083..3383 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462908.8255677-CDS-Ecto-sp13_S_contig1743:3383..35061681462908.8255677-CDS-Ecto-sp13_S_contig1743:3383..3506Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1743 3384..3506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1743.5220.1prot_Ecto-sp13_S_contig1743.5220.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1743 3384..3506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1743.5220.1

>prot_Ecto-sp13_S_contig1743.5220.1 ID=prot_Ecto-sp13_S_contig1743.5220.1|Name=mRNA_Ecto-sp13_S_contig1743.5220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=41bp
MVSMSGYHFLEHSLGRCSPVRQPSFSPYSNLAFTVHNKLAL
back to top

mRNA from alignment at Ecto-sp13_S_contig1743:3083..3506+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1743.5220.1 ID=mRNA_Ecto-sp13_S_contig1743.5220.1|Name=mRNA_Ecto-sp13_S_contig1743.5220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=424bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1743:3083..3506+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGTTAACGCGGGAAATGGTGCCGAAGTCAAAAACCGTTAACGAAGAAA
GCCCTGGATAATATGAAACCGAACCCGAACAGGTTACGCCACAAACGTGA
AACCGAAAACGTGAAAGTGAAAAGGTTGAGCCGAAAATATGAAACCGAAA
CCGCAAAGGTTTAGCCGAAAAGGTTAAACCGAAAAGGTTAGACCGAGAAG
GATAAGCCGAAAACGTGAAGCTGAAAACGTGAAACCGAAAAAGATAAGCC
GGGGAGGTTCAACCGCAAAAAACAGTAGTGCTGACGACTTGGTCGAAAGC
GATGGTCTCCATGTCCGGATACCATTTCTTGGAACATTCCTTGGGTAGGT
GCAGCCCTGTACGGCAACCTAGCTTTTCACCGTACAGCAACCTAGCGTTC
ACGGTGCACAACAAGCTAGCCCTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1743:3083..3506+

>mRNA_Ecto-sp13_S_contig1743.5220.1 ID=mRNA_Ecto-sp13_S_contig1743.5220.1|Name=mRNA_Ecto-sp13_S_contig1743.5220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1743:3083..3506+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCTCCATGTCCGGATACCATTTCTTGGAACATTCCTTGGGTAGGTG
CAGCCCTGTACGGCAACCTAGCTTTTCACCGTACAGCAACCTAGCGTTCA
CGGTGCACAACAAGCTAGCCCTG
back to top