mRNA_Ecto-sp13_S_contig1742.5215.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1742.5215.1
Unique NamemRNA_Ecto-sp13_S_contig1742.5215.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1742.5215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1742contigEcto-sp13_S_contig1742:3491..4910 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size337
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-02_003180.1
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462908.6579604-CDS-Ecto-sp13_S_contig1742:3490..37361681462908.6579604-CDS-Ecto-sp13_S_contig1742:3490..3736Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1742 3491..3736 -
1681462908.6788626-CDS-Ecto-sp13_S_contig1742:4820..49101681462908.6788626-CDS-Ecto-sp13_S_contig1742:4820..4910Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1742 4821..4910 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1742.5215.1prot_Ecto-sp13_S_contig1742.5215.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1742 3491..4910 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1742.5215.1

>prot_Ecto-sp13_S_contig1742.5215.1 ID=prot_Ecto-sp13_S_contig1742.5215.1|Name=mRNA_Ecto-sp13_S_contig1742.5215.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
MQAARSRQCSPHINVDRDRSRSVGVQSSTKGGFMIVCNHAASWLTGTEDV
VCCTPLCCSPRQWGVIHRPCPRGIRPLASRRRAHSLQLLREATRIERNVA
RTLGRQYRHLGQ
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mRNA from alignment at Ecto-sp13_S_contig1742:3491..4910-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1742.5215.1 ID=mRNA_Ecto-sp13_S_contig1742.5215.1|Name=mRNA_Ecto-sp13_S_contig1742.5215.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1742:3491..4910- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAAGCGGCGAGATCAAGGCAGTGCTCACCGCACATCAACGTCGACAG
AGATCGAAGCAGGAGCGTAGGCGTCCAATCTTCGACAAAGGTACCCTGGG
TTACTCATACGCTAGGGGTCGGCAAGGCTCTTTGGACCGGTTGTGCAGCA
AAGCAGTGTATATCCGGAATAGGCTCCGAGCGTACCTCCAGAAGACAGCC
ACCGACATCATGTACCCAACAGCAGTAGCACCTCAGTCTCTTCACAACTC
TGTAATGATGCAACCAAGTGAGGGTTGTGCTACGTAATCAGCTTTCATAC
CCACCTATTGCAGAAGGAGTCGCTTCATTTGGTCCAGAGACACCTAAGCA
TGACGAGATCAAAATTCAAATTTGTTGTTGGATCCCCGGTGTGGTGGCAG
CATCCGTAGTCACGCGTGTGTTACGGTGGTGGATGCACTTACATGAGGTT
GGCATGATGCAACCAAACCTTGATTGTTTTATGTACTCAGCTCACATATC
CACCTATTACGAGAGGAATTACTCCATTTGGTGCAGAAATACATAAGAAT
GACGATGTCAAAACTCAAGCTTGTTGTTGGATCCCACGGGTGGTGGCCAG
CACCCACGAGCACGCGTGTGTACGGCCGTGGGTGCATGAACACAAGGTTG
GCACGCCACAACTGAACATAGATTGATAGACAGACTCAGCTCACATGCCC
ACCAATTGCAAAATAAATTACTTCATTTGGGTAAGAGACCCCCAACCATG
TTGATGTCAAACCTCAAAAGGCCACCTGTGGATCAGAACGATGTGTTGGT
ATCTACATAATCATCCGCAGGCACGTACGCGGCCGGGTTTAATGAACATC
GAAAGCAGGCCCCAACAACGCATTACACAATATGAGTGCGTGTTGCACAT
GCCGCTATGGTATCGATGTCCGACCTTCCAGTTCAGCATTTGATCCCTTC
TGAATTGCTACTGCCACGCTCCTTGACGTGTGTGATTCAGCGTACCCGTT
CGTGCTGGCGACATGTCGACGGAAAAAACTACCGGTTCGGACGTGTTGAT
CTGGAAAATACCACCGAGAGTTCGAGGTGGTTCCGCGAAGAAGAGCACCT
CTGCTTTACAAACTTTAAAACTACACACTAACTAAATGTATTTTTTGTGT
TATGATACTCAACCTCGCTTTCAGGGTGGTTTCATGATCGTGTGCAATCA
CGCAGCTTCATGGCTAACCGGGACAGAAGACGTGGTTTGCTGCACCCCCC
TGTGCTGTTCCCCCCGGCAGTGGGGGGTTATACACCGCCCGTGTCCCCGC
GGCATCCGGCCGCTGGCCAGCAGACGGAGAGCCCATTCTCTCCAGCTGCT
GCGAGAGGCAACGAGGATAGAGCGCAACGTCGCGAGAACGTTGGGGAGGC
AGTACAGACACCTCGGGCAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1742:3491..4910-

>mRNA_Ecto-sp13_S_contig1742.5215.1 ID=mRNA_Ecto-sp13_S_contig1742.5215.1|Name=mRNA_Ecto-sp13_S_contig1742.5215.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1742:3491..4910- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAAGCGGCGAGATCAAGGCAGTGCTCACCGCACATCAACGTCGACAG
AGATCGAAGCAGGAGCGTAGGCGTCCAATCTTCGACAAAGGGTGGTTTCA
TGATCGTGTGCAATCACGCAGCTTCATGGCTAACCGGGACAGAAGACGTG
GTTTGCTGCACCCCCCTGTGCTGTTCCCCCCGGCAGTGGGGGGTTATACA
CCGCCCGTGTCCCCGCGGCATCCGGCCGCTGGCCAGCAGACGGAGAGCCC
ATTCTCTCCAGCTGCTGCGAGAGGCAACGAGGATAGAGCGCAACGTCGCG
AGAACGTTGGGGAGGCAGTACAGACACCTCGGGCAA
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