mRNA_Ecto-sp13_S_contig1742.5214.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1742.5214.1
Unique NamemRNA_Ecto-sp13_S_contig1742.5214.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1742.5214.1 vs. uniprot
Match: A0A6H5KUW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUW9_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.360e-13
Identity = 34/38 (89.47%), Postives = 34/38 (89.47%), Query Frame = -3 
Query:  365 GTSPGHMMAENCVL*LSEYSYVGTDNKTQTEKCGCKPA 478
            G SPGHM AENCVL LSEY YVGTDNKTQTEKCGCKPA
Sbjct:  393 GGSPGHMTAENCVLWLSEYPYVGTDNKTQTEKCGCKPA 430
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BLAST of mRNA_Ecto-sp13_S_contig1742.5214.1 vs. uniprot
Match: A0A6H5KIA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA6_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.300e-9
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = -3 
Query:  347 TSPGHMMAENCVL*LSEYSYVGTDNKTQTEKCGCKPARVRRAL 475
            TSP HM AEN  + LSEYSYVGTDNKTQTEK GCKPA  +++L
Sbjct:  256 TSPEHMTAENRAVWLSEYSYVGTDNKTQTEKYGCKPAPGKKSL 298
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1742.5214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KUW9_9PHAE1.360e-1389.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIA6_9PHAE1.300e-972.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1742contigEcto-sp13_S_contig1742:2343..2825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size485
Hectar predicted targeting categorysignal peptide
Exons1
Cds size474
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462908.5775754-CDS-Ecto-sp13_S_contig1742:2342..28161681462908.5775754-CDS-Ecto-sp13_S_contig1742:2342..2816Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1742 2343..2816 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462908.5908244-UTR-Ecto-sp13_S_contig1742:2816..28251681462908.5908244-UTR-Ecto-sp13_S_contig1742:2816..2825Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1742 2817..2825 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1742.5214.1prot_Ecto-sp13_S_contig1742.5214.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1742 2343..2816 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1742.5214.1

>prot_Ecto-sp13_S_contig1742.5214.1 ID=prot_Ecto-sp13_S_contig1742.5214.1|Name=mRNA_Ecto-sp13_S_contig1742.5214.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=158bp
LLLSFGPCRIIRRGGLLTSDWLLTSCWLLTSGCLLGSGPIRQKRAKGSSD
DGRCCRNGRCSISGRCSSNSGRSRNAGGSRSDPSLRFRRSNWFAGSPTHA
CQRAFPSCFSTAAPRAELFLPGPVCNHISPFASCCRCQRKNTQTVIARNF
LPSCARG*
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mRNA from alignment at Ecto-sp13_S_contig1742:2343..2825+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1742.5214.1 ID=mRNA_Ecto-sp13_S_contig1742.5214.1|Name=mRNA_Ecto-sp13_S_contig1742.5214.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1742:2343..2825+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCTCCTTAGCTTCGGTCCCTGTCGAATCATCCGGCGCGGCGGCCTGCT
GACTAGCGACTGGCTGCTCACTAGCTGCTGGCTACTGACTAGCGGCTGCC
TGCTGGGTAGCGGCCCTATACGCCAAAAGAGAGCGAAGGGCTCCAGCGAC
GATGGCAGATGTTGCAGGAACGGACGGTGTAGCATTAGCGGAAGGTGTAG
CAGCAACAGTGGACGCAGCCGGAACGCTGGAGGTAGCAGGAGCGATCCGA
GCCTCAGGTTCCGACGCTCGAATTGGTTCGCGGGTAGCCCTACACACGCA
TGCCAGCGAGCATTTCCTTCCTGCTTTTCGACAGCCGCACCTCGCGCAGA
GCTCTTCTTACCCGGGCCGGTTTGCAACCACATTTCTCCGTTTGCGTCTT
GTTGTCGGTGCCAACGTAAGAATACTCAGACAGTCATAGCACGCAATTTT
CTGCCATCATGTGCCCGGGGCTAGTCCCCTCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1742:2343..2825+

>mRNA_Ecto-sp13_S_contig1742.5214.1 ID=mRNA_Ecto-sp13_S_contig1742.5214.1|Name=mRNA_Ecto-sp13_S_contig1742.5214.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=474bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1742:2343..2825+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCTCCTTAGCTTCGGTCCCTGTCGAATCATCCGGCGCGGCGGCCTGCT
GACTAGCGACTGGCTGCTCACTAGCTGCTGGCTACTGACTAGCGGCTGCC
TGCTGGGTAGCGGCCCTATACGCCAAAAGAGAGCGAAGGGCTCCAGCGAC
GATGGCAGATGTTGCAGGAACGGACGGTGTAGCATTAGCGGAAGGTGTAG
CAGCAACAGTGGACGCAGCCGGAACGCTGGAGGTAGCAGGAGCGATCCGA
GCCTCAGGTTCCGACGCTCGAATTGGTTCGCGGGTAGCCCTACACACGCA
TGCCAGCGAGCATTTCCTTCCTGCTTTTCGACAGCCGCACCTCGCGCAGA
GCTCTTCTTACCCGGGCCGGTTTGCAACCACATTTCTCCGTTTGCGTCTT
GTTGTCGGTGCCAACGTAAGAATACTCAGACAGTCATAGCACGCAATTTT
CTGCCATCATGTGCCCGGGGCTAG
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