mRNA_Ecto-sp13_S_contig174.5206.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig174.5206.1
Unique NamemRNA_Ecto-sp13_S_contig174.5206.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig174.5206.1 vs. uniprot
Match: D8LS97_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS97_ECTSI)

HSP 1 Score: 1500 bits (3884), Expect = 0.000e+0
Identity = 891/984 (90.55%), Postives = 921/984 (93.60%), Query Frame = 1 
Query:  208 MSANYTGEVDLQFLRHGQGQYRYPNSVFRYTGKWNTGTKGGLGVFEVVGGSTYEGTFVDGELEGKGSKLWADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGEGSXXXXXXXXXXXXXXXXXXXXGFQFTGAFSGGLPXXXXXXXXXXXXXXXXXXXXXXXXXXXGKYVCGVTGICWTGEWVEGKAKGLPSKWELELDGDNKSLRGGGDSVGQATPAKPRAKAEKGGGGKKGAKASKKAVEDPETDAADKPVIAHVNDDGDVAALWCRCVRDVQDIPQPPPIPSELQEGVVDELTQHAKEHQREVVSDESGRTLTVTLHEVTESPQPGSISDPVPFFVRRPDATDVSESLGRFPVEGLLALFHLDERCYPKGTTGDGRTLLIVPGAKPAPDTPAEEAEVSPPAKGSKAAAAKSKGGVKGESEPRPSGDDGIEGVWQVIRSEVQSNRCLVIRAGENFSLRTPPLFDKALGKTKAQKDGERRNSVLDSEDNAGILEGGGVPPEEEKTREEDVPGVVHGSSKSVEILQQIENANDAGEQRTMMVQQHSPFAVCLDFRLDLMDAQKWESTGGEGGQEKRLEEEKTMRIILCGNDVEVSAVIRLWIPPAEPPVGAADDVGMEADRPTEMSGSGASGALAKAGDSRLSAKGGALDNASPTTLISPRSGGNAIDDSSSLPTTPTWYLHAISIRCGSFVGTVPCANPEERALRRREPTTSASESWPSAGAASSRSGRGFECHFAEWHALAVIASPERVLSLCIDGEELELLQDAEGTAVAAGIGCDESELSASDAVVLGGGAGGEWASLAVKNLAVYNKSPGIDQLRAITQVFRVWRERKEAARAADVQEDERWEEETRRAEEEEREPGAGERPEWVVGADRETILHKKTVRGEAKIDKIVLPKVALEGGDWVLRVEDVSHGECPDEDGSTGRARSAASAESFVSQVVVPATTATHEERNTFPPLPVETVKLERV 3159
            MSA+YTGE+DLQFLRHGQGQYRYPNSVFRYTGKWNTG K GLGVFEVVGGSTYEGTFVDGELEGKGSKLWAD  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    NGEGSXXXXXXXXXXXXXXXXXXXXGFQFTG FSGGLPXXXXXXXXXXXXXXXXXXXXXXXXXXXG YVCGVTGI W GEWVEGKAKGLPSKWELELDGD K+L GGGDSVGQATPAKPRAKAEKGGGGKKGAK SKK VE+PETDAA KPVIAHVNDDGDVAALWCRCVRDVQD+PQPPPIPSELQEGVVDELT+ AKEH REVVSDESGRTLTVTLHEVTESPQPGSISDPVPFFVRRPDATDVSESLGRFPV+GL+ALF  DERCYPKGT+ DG  LLIVPG K APDTPAEEAEVSPPAKGSKA AAKSKGGVKGESE +PSGDDGIEG+WQVIRSEVQSNRCLVIRA ENFSLRTPPLFD  LGKTKA++DGER+NSVLDSE+NAG+LEGG VPPEEE TREE VPGVVHGSSKSVE+LQQIE+A+DAGEQ TMMVQQHSPFAVCLDFRLDLM+  K EST GEGGQEK LEEEKTMRI+LCGNDVEVSAV+RLWIPPAEPPVGAAD+VGMEADRPTEMSGSGASGALAKAGDSRL AKGGAL+NASPTTLISPRSGGNAIDDSSS PTTPTWYLHAISIRCGSFVGTVPCANPEE ALRR+  T SASES PSAG A   S  GF+C  AEWHALA++ASPERVLSLCIDGEELEL QDA GTA AAGIGCDESELSASDAVVLGGGAGGEWASLAVKNLAVYN+ PGIDQLRAITQVFRVWRERKEAAR ADVQEDERWEEETRRAEEEEREPGAGERPEWVVGADR+TILHKKTVRGEAKIDKIVLPKVALEGGDWVLRVEDVSHGE PDE GSTGRARSAASAESFVSQVVVPATTAT EERNTFPPLPVETVKLERV
Sbjct:    1 MSAHYTGEIDLQFLRHGQGQYRYPNSVFRYTGKWNTGIKSGLGVFEVVGGSTYEGTFVDGELEGKGSKLWADGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVLPNGEGSXXXXXXXXXXXXXXXXXXXXGFQFTGTFSGGLPXXXXXXXXXXXXXXXXXXXXXXXXXXXGTYVCGVTGIYWIGEWVEGKAKGLPSKWELELDGDKKTLGGGGDSVGQATPAKPRAKAEKGGGGKKGAKGSKKPVEEPETDAAYKPVIAHVNDDGDVAALWCRCVRDVQDMPQPPPIPSELQEGVVDELTRPAKEHPREVVSDESGRTLTVTLHEVTESPQPGSISDPVPFFVRRPDATDVSESLGRFPVQGLVALFQRDERCYPKGTSSDGTALLIVPGEKSAPDTPAEEAEVSPPAKGSKAPAAKSKGGVKGESEQKPSGDDGIEGLWQVIRSEVQSNRCLVIRAEENFSLRTPPLFDSGLGKTKAEEDGERKNSVLDSEENAGVLEGG-VPPEEENTREEGVPGVVHGSSKSVELLQQIEHADDAGEQCTMMVQQHSPFAVCLDFRLDLMETPKGESTDGEGGQEKPLEEEKTMRIVLCGNDVEVSAVMRLWIPPAEPPVGAADNVGMEADRPTEMSGSGASGALAKAGDSRLGAKGGALENASPTTLISPRSGGNAIDDSSSPPTTPTWYLHAISIRCGSFVGTVPCANPEEIALRRKGSTASASESLPSAGTAPHPSRTGFDCDLAEWHALALVASPERVLSLCIDGEELELKQDAGGTAAAAGIGCDESELSASDAVVLGGGAGGEWASLAVKNLAVYNEFPGIDQLRAITQVFRVWRERKEAARVADVQEDERWEEETRRAEEEEREPGAGERPEWVVGADRQTILHKKTVRGEAKIDKIVLPKVALEGGDWVLRVEDVSHGEGPDEYGSTGRARSAASAESFVSQVVVPATTATDEERNTFPPLPVETVKLERV 983
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BLAST of mRNA_Ecto-sp13_S_contig174.5206.1 vs. uniprot
Match: A0A6H5L2Y6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Y6_9PHAE)

HSP 1 Score: 1359 bits (3518), Expect = 0.000e+0
Identity = 817/984 (83.03%), Postives = 843/984 (85.67%), Query Frame = 1 
Query:  208 MSANYTGEVDLQFLRHGQGQYRYPNSVFRYTGKWNTGTKGGLGVFEVVGGSTYEGTFVDGELEGKGSKLWADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGEGSXXXXXXXXXXXXXXXXXXXXGFQFTGAFSGGLPXXXXXXXXXXXXXXXXXXXXXXXXXXXGKYVCGVTGICWTGEWVEGKAKGLPSKWELELDGDNKSLRGGGDSVGQATPAKPRAKAEKGGGGKKGAKASKKAVEDPETDAADKPVIAHVNDDGDVAALWCRCVRDVQDIPQPPPIPSELQEGVVDELTQHAKEHQREVVSDESGRTLTVTLHEVTESPQPGSISDPVPFFVRRPDATDVSESLGRFPVEGLLALFHLDERCYPKGTTGDGRTLLIVPGAKPAPDTPAEEAEVSPPAKGSKAAAAKSKGGVKGESEPRPSGDDGIEGVWQVIRSEVQSNRCLVIRAGENFSLRTPPLFDKALGKTKAQKDGERRNSVLDSEDNAGILEGGGVPPEEEKTREEDVPGVVHGSSKSVEILQQIENANDAGEQRTMMVQQHSPFAVCLDFRLDLMDAQKWESTGGEGGQEKRLEEEKTMRIILCGNDVEVSAVIRLWIPPAEPPVGAADDVGMEADRPTEMSGSGASGALAKAGDSRLSAKGGALDNASPTTLISPRSGGNAIDDSSSLPTTPTWYLHAISIRCGSFVGTVPCANPEERALRRREPTTSASESWPSAGAASSRSGRGFECHFAEWHALAVIASPERVLSLCIDGEELELLQDAEGTAVAAGIGCDESELSASDAVVLGGGAGGEWASLAVKNLAVYNKSPGIDQLRAITQVFRVWRERKEAARAADVQEDERWEEETRRAEEEEREPGAGERPEWVVGADRETILHKKTVRGEAKIDKIVLPKVALEGGDWVLRVEDVSHGECPDEDGSTGRARSAASAESFVSQVVVPATTATHEERNTFPPLPVETVKLERV 3159
            MSA+YTGEVDLQFLRHGQGQYRYPNSVFRYTGKW  GTK GLGVFEV+GGS                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  EGS  XXXXXXXXXXXXXXXXX GFQFTG       XXXXXXXXXXX                GKYVCGVTGICW GEWV GKAKGLPSKWELELDGDNK+L GG DSVGQATPAKPRAKAEKGGGGKKGAK SKKAVE+PETDAADK VIAHVNDDGDVAALWCRCVRDVQDIPQPPPIPSELQEGVVDELT+ AK HQREVVSDESGRTLTVTLHEVTESPQPGSISDPVPFFVRRPDATDVSESLGRFPV+GL+ALF  DERCYPK TTGDGRTLLIVPGAKPAPDTPAEEAE+SPPAKGSKA AAKSKGGVKGESE +P GDDGIEG+WQVIRSEVQSNRCL IRAG+NFSLRTPPLFD  LGKTK Q+DGERR SVLDSE+NAG+LEGGGVPPE E TREEDV  VVHGSSK VE+LQ IENA+ AGEQRTMMVQQHSPFAVCLDFRLDLM+A K EST GEGGQEKRLE E  MRI+LCGNDVEVSAVIRLWIPP EPPVGAADDVG EADRP EMSGSGASGAL               DNASPTTLI PR GGNAI DSSS PTTPTWYLHAISIRCGSFVGTVPCANPE+RA+RR+ PT SASESWPSAGAA  RS RGFEC  AEWHALA++ASPERVLSLCIDGEELELLQDAEGTA AAGIG DESELSASDAVVLGGGAGGEWASLAVKNLAVYN+SPGIDQLRAITQVFRVWRERKEAARA DVQE                    GERPEWVVGADRETIL K+TVRGEAKIDKIVLPKVALEGGDWVLRVEDVSHGE PDE GSTGRARSAA AESFVSQVVVPATTAT EERNTFPPLPVETVKLER+
Sbjct:    1 MSAHYTGEVDLQFLRHGQGQYRYPNSVFRYTGKWKAGTKSGLGVFEVLGGSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGSYVXXXXXXXXXXXXXXXXXSGFQFTGXXXXXXXXXXXXXXXXXXSLFHGPFDKGRKHGRGGKYVCGVTGICWIGEWVAGKAKGLPSKWELELDGDNKTLGGGRDSVGQATPAKPRAKAEKGGGGKKGAKISKKAVEEPETDAADKLVIAHVNDDGDVAALWCRCVRDVQDIPQPPPIPSELQEGVVDELTRPAKGHQREVVSDESGRTLTVTLHEVTESPQPGSISDPVPFFVRRPDATDVSESLGRFPVKGLIALFQRDERCYPKETTGDGRTLLIVPGAKPAPDTPAEEAEISPPAKGSKAPAAKSKGGVKGESELKPFGDDGIEGLWQVIRSEVQSNRCLEIRAGKNFSLRTPPLFDTGLGKTKEQEDGERRKSVLDSEENAGVLEGGGVPPEVENTREEDVTVVVHGSSKPVELLQPIENADGAGEQRTMMVQQHSPFAVCLDFRLDLMEAPKGESTDGEGGQEKRLEHEMIMRIVLCGNDVEVSAVIRLWIPPTEPPVGAADDVGTEADRPAEMSGSGASGAL---------------DNASPTTLIPPRGGGNAIGDSSSPPTTPTWYLHAISIRCGSFVGTVPCANPEDRAVRRKVPTASASESWPSAGAAPPRSERGFECDLAEWHALALVASPERVLSLCIDGEELELLQDAEGTAAAAGIGYDESELSASDAVVLGGGAGGEWASLAVKNLAVYNESPGIDQLRAITQVFRVWRERKEAARATDVQE--------------------GERPEWVVGADRETILQKRTVRGEAKIDKIVLPKVALEGGDWVLRVEDVSHGEGPDEHGSTGRARSAALAESFVSQVVVPATTATDEERNTFPPLPVETVKLERI 949
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BLAST of mRNA_Ecto-sp13_S_contig174.5206.1 vs. uniprot
Match: A0A6A5A1R6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A5A1R6_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.300e-11
Identity = 34/69 (49.28%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:  217 NYTGEVDLQFLRHGQGQYRYPNSVFRYTGKWNTGTKGGLGVFEVVGGSTYEGTFVDGELEGKGSKLWAD 423
            +Y G V  + LRHGQG Y +P   ++YTG+W+ G   G G+F +  GSTYEG FVDGE++G G + W D
Sbjct:    2 SYVGSVQKR-LRHGQGTYTFPGGYYKYTGEWHHGKMHGHGIFFLGDGSTYEGNFVDGEIQGSGLRRWPD 69
[Close]
BLAST of mRNA_Ecto-sp13_S_contig174.5206.1 vs. uniprot
Match: UPI001E6865FE (MORN repeat-containing protein 1-like isoform X1 n=2 Tax=Mirounga angustirostris TaxID=9716 RepID=UPI001E6865FE)

HSP 1 Score: 67.0 bits (162), Expect = 1.880e-8
Identity = 32/57 (56.14%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:  250 RHGQGQYRYPNSVFRYTGKWNTGTKGGLGVFEVVGGSTYEGTFVDGELEGKGSKLWA 420
            R G G Y YPN+ FRY G+W  G K G G      GS YEG FVDGE+ GKG +LWA
Sbjct:   39 RDGYGVYVYPNAFFRYEGEWKGGKKHGQGKLLFKDGSYYEGEFVDGEITGKGCRLWA 95
[Close]
BLAST of mRNA_Ecto-sp13_S_contig174.5206.1 vs. uniprot
Match: A0A7N5K6Q8_AILME (MORN repeat containing 1 n=1 Tax=Ailuropoda melanoleuca TaxID=9646 RepID=A0A7N5K6Q8_AILME)

HSP 1 Score: 67.0 bits (162), Expect = 2.060e-8
Identity = 33/59 (55.93%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:  244 FLRHGQGQYRYPNSVFRYTGKWNTGTKGGLGVFEVVGGSTYEGTFVDGELEGKGSKLWA 420
            F   G G Y YPNS FRY G+W  G K G G      GS YEG FVDGE+ GKG +LWA
Sbjct:   35 FPYSGYGVYVYPNSFFRYEGEWKGGKKHGQGKLLFKDGSYYEGEFVDGEITGKGCRLWA 93
[Close]
BLAST of mRNA_Ecto-sp13_S_contig174.5206.1 vs. uniprot
Match: A0A7N5KRK6_AILME (MORN repeat containing 1 n=1 Tax=Ailuropoda melanoleuca TaxID=9646 RepID=A0A7N5KRK6_AILME)

HSP 1 Score: 67.0 bits (162), Expect = 3.430e-8
Identity = 33/59 (55.93%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:  244 FLRHGQGQYRYPNSVFRYTGKWNTGTKGGLGVFEVVGGSTYEGTFVDGELEGKGSKLWA 420
            F   G G Y YPNS FRY G+W  G K G G      GS YEG FVDGE+ GKG +LWA
Sbjct:   35 FPYSGYGVYVYPNSFFRYEGEWKGGKKHGQGKLLFKDGSYYEGEFVDGEITGKGCRLWA 93
[Close]
BLAST of mRNA_Ecto-sp13_S_contig174.5206.1 vs. uniprot
Match: A0A7F8PY09_LEPWE (MORN repeat-containing protein 1 n=1 Tax=Leptonychotes weddellii TaxID=9713 RepID=A0A7F8PY09_LEPWE)

HSP 1 Score: 68.2 bits (165), Expect = 4.110e-8
Identity = 33/57 (57.89%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:  250 RHGQGQYRYPNSVFRYTGKWNTGTKGGLGVFEVVGGSTYEGTFVDGELEGKGSKLWA 420
            R G G Y YPNS FRY G+W  G K G G      GS YEG FVDGE+ GKG +LWA
Sbjct:   39 RDGYGVYVYPNSFFRYEGEWKGGKKHGQGKLLFKDGSYYEGEFVDGEITGKGCRLWA 95
[Close]
BLAST of mRNA_Ecto-sp13_S_contig174.5206.1 vs. uniprot
Match: D2HPP5_AILME (Uncharacterized protein (Fragment) n=10 Tax=Ursidae TaxID=9632 RepID=D2HPP5_AILME)

HSP 1 Score: 67.0 bits (162), Expect = 1.130e-7
Identity = 33/59 (55.93%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:  244 FLRHGQGQYRYPNSVFRYTGKWNTGTKGGLGVFEVVGGSTYEGTFVDGELEGKGSKLWA 420
            F   G G Y YPNS FRY G+W  G K G G      GS YEG FVDGE+ GKG +LWA
Sbjct:    4 FPYSGYGVYVYPNSFFRYEGEWKGGKKHGQGKLLFKDGSYYEGEFVDGEITGKGCRLWA 62
[Close]
BLAST of mRNA_Ecto-sp13_S_contig174.5206.1 vs. uniprot
Match: G1M480_AILME (MORN repeat containing 1 n=1 Tax=Ailuropoda melanoleuca TaxID=9646 RepID=G1M480_AILME)

HSP 1 Score: 67.0 bits (162), Expect = 1.160e-7
Identity = 33/59 (55.93%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:  244 FLRHGQGQYRYPNSVFRYTGKWNTGTKGGLGVFEVVGGSTYEGTFVDGELEGKGSKLWA 420
            F   G G Y YPNS FRY G+W  G K G G      GS YEG FVDGE+ GKG +LWA
Sbjct:   35 FPYSGYGVYVYPNSFFRYEGEWKGGKKHGQGKLLFKDGSYYEGEFVDGEITGKGCRLWA 93
[Close]
BLAST of mRNA_Ecto-sp13_S_contig174.5206.1 vs. uniprot
Match: A0A7N5J871_AILME (MORN repeat containing 1 n=2 Tax=Ailuropoda melanoleuca TaxID=9646 RepID=A0A7N5J871_AILME)

HSP 1 Score: 67.0 bits (162), Expect = 1.340e-7
Identity = 33/59 (55.93%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:  244 FLRHGQGQYRYPNSVFRYTGKWNTGTKGGLGVFEVVGGSTYEGTFVDGELEGKGSKLWA 420
            F   G G Y YPNS FRY G+W  G K G G      GS YEG FVDGE+ GKG +LWA
Sbjct:   35 FPYSGYGVYVYPNSFFRYEGEWKGGKKHGQGKLLFKDGSYYEGEFVDGEITGKGCRLWA 93
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig174.5206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LS97_ECTSI0.000e+090.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2Y6_9PHAE0.000e+083.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A5A1R6_9STRA1.300e-1149.28Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
UPI001E6865FE1.880e-856.14MORN repeat-containing protein 1-like isoform X1 n... [more]
A0A7N5K6Q8_AILME2.060e-855.93MORN repeat containing 1 n=1 Tax=Ailuropoda melano... [more]
A0A7N5KRK6_AILME3.430e-855.93MORN repeat containing 1 n=1 Tax=Ailuropoda melano... [more]
A0A7F8PY09_LEPWE4.110e-857.89MORN repeat-containing protein 1 n=1 Tax=Leptonych... [more]
D2HPP5_AILME1.130e-755.93Uncharacterized protein (Fragment) n=10 Tax=Ursida... [more]
G1M480_AILME1.160e-755.93MORN repeat containing 1 n=1 Tax=Ailuropoda melano... [more]
A0A7N5J871_AILME1.340e-755.93MORN repeat containing 1 n=2 Tax=Ailuropoda melano... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig174contigEcto-sp13_S_contig174:13424..18309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score1516.1
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D8LS97
Model size3202
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.regulation of ryanodine-sensitive calcium-release channel activity
EggNOG OGsCOG4642@1,KOG0231@2759
Cds size2955
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig174.5206.1prot_Ecto-sp13_S_contig174.5206.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig174 13631..18269 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462907.7393692-UTR-Ecto-sp13_S_contig174:13423..136301681462907.7393692-UTR-Ecto-sp13_S_contig174:13423..13630Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig174 13424..13630 +
1681462907.8204272-UTR-Ecto-sp13_S_contig174:18269..183091681462907.8204272-UTR-Ecto-sp13_S_contig174:18269..18309Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig174 18270..18309 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462907.7518556-CDS-Ecto-sp13_S_contig174:13630..137161681462907.7518556-CDS-Ecto-sp13_S_contig174:13630..13716Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig174 13631..13716 +
1681462907.7619085-CDS-Ecto-sp13_S_contig174:13983..142891681462907.7619085-CDS-Ecto-sp13_S_contig174:13983..14289Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig174 13984..14289 +
1681462907.7723482-CDS-Ecto-sp13_S_contig174:14578..150591681462907.7723482-CDS-Ecto-sp13_S_contig174:14578..15059Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig174 14579..15059 +
1681462907.7820926-CDS-Ecto-sp13_S_contig174:15312..154501681462907.7820926-CDS-Ecto-sp13_S_contig174:15312..15450Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig174 15313..15450 +
1681462907.7919433-CDS-Ecto-sp13_S_contig174:15698..173191681462907.7919433-CDS-Ecto-sp13_S_contig174:15698..17319Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig174 15699..17319 +
1681462907.8016286-CDS-Ecto-sp13_S_contig174:17611..177181681462907.8016286-CDS-Ecto-sp13_S_contig174:17611..17718Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig174 17612..17718 +
1681462907.8119042-CDS-Ecto-sp13_S_contig174:18053..182691681462907.8119042-CDS-Ecto-sp13_S_contig174:18053..18269Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig174 18054..18269 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig174.5206.1

>prot_Ecto-sp13_S_contig174.5206.1 ID=prot_Ecto-sp13_S_contig174.5206.1|Name=mRNA_Ecto-sp13_S_contig174.5206.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=985bp
MSANYTGEVDLQFLRHGQGQYRYPNSVFRYTGKWNTGTKGGLGVFEVVGG
STYEGTFVDGELEGKGSKLWADGRRYEGEFDRGEASGEGHFTSPAGESYV
GTWALNKRHGRGKLVLPNGEGSYVGEFQRHRFHGDGQLVLANGFQFTGAF
SGGLPHGAGAAVYPGGSLFHGPFDKGRNHGRGGKYVCGVTGICWTGEWVE
GKAKGLPSKWELELDGDNKSLRGGGDSVGQATPAKPRAKAEKGGGGKKGA
KASKKAVEDPETDAADKPVIAHVNDDGDVAALWCRCVRDVQDIPQPPPIP
SELQEGVVDELTQHAKEHQREVVSDESGRTLTVTLHEVTESPQPGSISDP
VPFFVRRPDATDVSESLGRFPVEGLLALFHLDERCYPKGTTGDGRTLLIV
PGAKPAPDTPAEEAEVSPPAKGSKAAAAKSKGGVKGESEPRPSGDDGIEG
VWQVIRSEVQSNRCLVIRAGENFSLRTPPLFDKALGKTKAQKDGERRNSV
LDSEDNAGILEGGGVPPEEEKTREEDVPGVVHGSSKSVEILQQIENANDA
GEQRTMMVQQHSPFAVCLDFRLDLMDAQKWESTGGEGGQEKRLEEEKTMR
IILCGNDVEVSAVIRLWIPPAEPPVGAADDVGMEADRPTEMSGSGASGAL
AKAGDSRLSAKGGALDNASPTTLISPRSGGNAIDDSSSLPTTPTWYLHAI
SIRCGSFVGTVPCANPEERALRRREPTTSASESWPSAGAASSRSGRGFEC
HFAEWHALAVIASPERVLSLCIDGEELELLQDAEGTAVAAGIGCDESELS
ASDAVVLGGGAGGEWASLAVKNLAVYNKSPGIDQLRAITQVFRVWRERKE
AARAADVQEDERWEEETRRAEEEEREPGAGERPEWVVGADRETILHKKTV
RGEAKIDKIVLPKVALEGGDWVLRVEDVSHGECPDEDGSTGRARSAASAE
SFVSQVVVPATTATHEERNTFPPLPVETVKLERV*
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mRNA from alignment at Ecto-sp13_S_contig174:13424..18309+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig174.5206.1 ID=mRNA_Ecto-sp13_S_contig174.5206.1|Name=mRNA_Ecto-sp13_S_contig174.5206.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4886bp|location=Sequence derived from alignment at Ecto-sp13_S_contig174:13424..18309+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGGGCAGTCTTTCTGCGATGTTGTGTACTGGTATCACTTTTAGCAAAA
CATTGACGGGCTCCTCGTCCCTTGGCCAGTTCTATGGAAGCCTGCGTCCT
CAACTTTTTTTCCTCCCCGAGCAGTGCCGAGAGTCGCCATTCGAAATTTT
TCACGCTTGAAAATTGAAATCGAGGGAGACCGAGAGTACGCACCACCGAC
ATAGGCCATGTCGGCTAACTACACGGGAGAGGTTGATCTGCAATTCTTGC
GCCACGGACAAGGACAATACCGATATCCCAACAGCGTTTTTAGGTCTGTG
ATGAATAACTGGCTTGTTGCCTAAGGTGCAAATGAGATGGTCACGTTGCG
TGGTGTACACGGAATCTGCGGATGAAGGTTACACGTGTCGTAGATTCTGT
GTCTCACACGTGGCTTCGCGCGTTTTGATGCACTGGCAGCAATTTCCTCA
ATCGATCAAACTAGGATAACGACGACGGCTCTCTTCGAGGAGTATTATTT
GTCCACACCTTGCTGATTCTGTGTCATTTGCTGCTTGATTTCTTCTCTGG
GCGCACACAGATACACGGGAAAATGGAACACAGGGACGAAAGGCGGGCTA
GGCGTGTTCGAGGTCGTGGGGGGGAGCACATACGAGGGTACCTTCGTAGA
CGGGGAACTAGAAGGGAAGGGTTCGAAGCTGTGGGCCGATGGACGACGTT
ACGAGGGAGAGTTTGACAGGGGGGAGGCCAGTGGGGAAGGGCATTTCACC
TCTCCTGCTGGCGAATCGTACGTCGGAACGTGGGCCCTCAACAAACGACA
TGGGCGAGGCAAGCTAGTTTTGCCGAACGGCGAAGGAAGCTACGTCGGAG
AGTTTCAGAGGCACAGGTAATGAGCCACTTCGCAGCGGCTGAGGGTTTCT
AGGTGAACGCACACGACCACCCGGCCTCGGGAGGTTCCGGTGTGTCTATA
CGTAGCCCGCCGCAAGCTTGTCTTCGCCATATCGTGATTCTTCGACCACT
CTCGTACACGCAGACCCTCTCATGGTAAACGTCGTCGTGCCAAATGGCGA
ACACACAAGCAGTGCAAAAAATGATGCACATGCAACAAGGTGCACCTTTT
CTAGCAGGGGGGAAAGTGGCCCCACCATCTCCGATCCACCCTGATGCCAA
AAAAGGTTTCACGGGGATGGCCAACTTGTTCTCGCGAACGGCTTTCAGTT
CACGGGAGCATTCTCCGGCGGCCTCCCACATGGTGCTGGCGCTGCTGTGT
ACCCTGGCGGAAGCTTGTTCCACGGCCCATTCGACAAAGGCCGAAACCAC
GGACGTGGGGGGAAGTACGTGTGCGGTGTCACAGGTATCTGCTGGACTGG
TGAGTGGGTAGAGGGCAAGGCGAAGGGGTTGCCGTCGAAATGGGAACTAG
AGCTGGACGGCGACAACAAAAGCTTAAGGGGCGGAGGGGACAGCGTCGGC
CAGGCAACGCCGGCGAAGCCTCGCGCGAAGGCAGAAAAGGGCGGCGGTGG
GAAGAAAGGCGCCAAGGCTTCCAAGAAAGCTGTTGAGGACCCTGAGACGG
ATGCTGCCGACAAACCAGTGATCGCCCATGTTAATGACGACGGGGACGTC
GCCGCTTTATGGTGTCGCTGTGTGCGGGACGTCCAGGTGTGTTGTTTTCA
TTTGGCGATATACATGCTTCGTACGTGTTTCTCAACGAGTGCTCGGGACG
CGTGAGAGCGGAATCTGGCTGATGTTAAAGATAGCGGGTTTCCGCATTGT
TCGGAGATTGTGGCGCCTCGAAGAGTTCATTCGTCACTCCAAACACGATC
ATCATGGTTGAATATCGTATTATTCGAGCTGATCGTCAACTCCGGTGTTC
GCTCATGTTGTCGTCGCTGGCTTTTGTCACCCACGGAAGGACATTCCCCA
ACCACCGCCGATACCTTCAGAGCTCCAGGAAGGTGTTGTTGATGAGTTGA
CACAACATGCAAAGGAGCACCAGCGAGAAGTCGTGTCCGACGAGAGCGGG
AGGACACTGACCGTCACTCTGCACGAGGTACGCACCTATGTACCAAGCTG
TTGCCCCGCCCGTATCGGTCCTGACGAAAAAAACCGTGATTACCGTTATA
CCGCAGATGGGGCTGTGGTGCGAATGAAGGCGTGTTTACGCGTGGTTGCG
CCTTTTCAGCTCCGCGACCCTACGTTACTAAGCTCGCGGTAAGGTGACCG
CTCCTACGTCCCGAAAACCACGATATTCCGCCCGGTTTTTGTCCCTACCA
CTTTTTGATGGGACAAGCAATGCAGGTGACGGAGTCTCCGCAACCGGGTT
CGATCAGCGATCCTGTCCCGTTCTTCGTTCGTAGACCTGACGCCACTGAC
GTTTCGGAAAGTCTCGGCCGGTTCCCGGTAGAAGGGCTTTTAGCCCTGTT
TCACCTCGACGAGCGGTGCTACCCAAAGGGGACAACCGGCGACGGCAGGA
CTCTTCTCATCGTGCCCGGAGCGAAGCCGGCGCCCGACACCCCCGCCGAA
GAAGCTGAGGTTTCGCCGCCCGCCAAAGGGAGCAAAGCAGCGGCCGCGAA
GAGTAAAGGGGGCGTCAAGGGCGAGAGCGAGCCAAGACCTTCCGGGGACG
ATGGCATCGAAGGAGTGTGGCAGGTGATCAGGAGCGAGGTTCAATCAAAC
CGCTGTCTCGTGATTAGGGCCGGGGAAAACTTCTCGCTAAGGACCCCACC
GCTGTTTGACAAGGCGCTCGGCAAAACGAAAGCACAAAAAGATGGAGAGA
GGAGAAATAGTGTCCTAGACTCTGAAGACAACGCAGGTATCCTTGAAGGG
GGTGGAGTGCCGCCCGAAGAGGAGAAAACGAGGGAAGAGGATGTACCAGG
AGTCGTCCACGGCAGCTCAAAATCGGTGGAAATATTGCAACAGATCGAAA
ACGCGAACGATGCTGGAGAGCAGCGCACGATGATGGTCCAGCAGCATTCC
CCATTCGCTGTGTGTCTCGATTTCAGATTAGACCTGATGGATGCCCAAAA
ATGGGAGAGCACGGGCGGTGAAGGCGGCCAGGAGAAACGTTTGGAAGAAG
AAAAGACAATGAGGATCATCTTGTGCGGCAACGATGTCGAAGTTTCTGCC
GTAATTCGCCTCTGGATCCCTCCTGCGGAACCGCCCGTTGGTGCTGCTGA
TGATGTCGGCATGGAGGCAGACCGCCCGACGGAAATGTCCGGAAGTGGTG
CTTCTGGTGCCCTCGCGAAAGCCGGCGATTCGAGACTCAGTGCGAAGGGT
GGAGCCCTCGATAACGCGTCTCCGACCACGTTGATCTCCCCTCGTAGCGG
TGGAAATGCCATCGACGACTCTAGCAGCCTTCCCACAACCCCTACTTGGT
ACCTCCACGCAATATCGATTCGCTGTGGATCTTTCGTTGGGACGGTGCCG
TGCGCGAATCCAGAAGAGCGCGCCTTGCGACGAAGAGAGCCCACTACCTC
TGCGTCGGAGTCATGGCCTTCGGCAGGAGCCGCATCTTCGCGGTCAGGAA
GAGGCTTCGAATGCCACTTCGCCGAGTGGCACGCCCTCGCGGTCATCGCT
AGCCCCGAACGGGTGCTCTCGCTGTGCATCGATGGAGAAGAACTCGAATT
GCTACAAGACGCGGAAGGCACTGCTGTTGCAGCCGGCATCGGTTGCGACG
AGTCGGAGCTATCGGCGAGCGATGCCGTGGTTTTGGGAGGTGGGGCGGGT
GGGGAGTGGGCGAGTCTCGCGGTCAAGAACCTTGCTGTGTACAACAAATC
GCCTGGCATCGACCAGCTCCGTGCGATAACGCAAGTGTTCCGGGTGTGGA
GGGAGCGGAAGGAAGCTGCTAGAGCGGCTGATGTGCAGGAAGATGAGCGC
TGGGAGGAGGAGACTAGGAGAGCGGAGGAAGAGGAAAGGGAACCCGGTGC
GTGTTGCGCGTGCCACCCACGCAACGAATCAGACGACCTGCAAAAGCAGC
GGTGCTTCTCAAGAATGCGCACGACTACCGCAACGGCTACTTTCACACAT
CAGATCGCACAGGGCGCTCTTAGAATAGTTTTTCTACATAGCGAGCGCAA
GGTTGAAGCGGGCGGCCCAGGTGTTGTTTTGCGTAAGACGGCACATGTCA
GACGAAGCACGGCGAGCCCCCATCTAATGTTTACCATCCATCCTCACTGT
TGTATGCTTCCCATGTTGCTGTGTACGTTCGTCATGAGGGGCAGGAGAAA
GACCGGAGTGGGTTGTGGGGGCTGACCGCGAAACGATCTTGCACAAGAAA
ACCGTTCGCGGCGAGGCGAAAATAGACAAGATCGTATTACCAAAGGTAAG
AGAGGGGACGAGAGGAAGCGTGGGAGGGAATGGCATCGATGCAAGAAAAA
TTCTACTTTTTTGTTAGCAAGGACATTCCGTAGGTGAATAGACGTATGTA
GTACCGTCCAGAAACAATAGGGCAAGACGTTCACAATGTGTGCCATTTTC
CAACCACGTCGGTGTCCCCCCGCATAGCTCCCCGAACAGCGAGTCAGCAA
CAGAGGACGAAGCTACAGTACCGCATCCCATTTACTCGCATACATTGCAA
CTCAGCCGTTTCCAAAACGGATCTGGAGCAATGCTACCAACAACGAACCG
AATGACGCTCCAACGCCATGTTGCTAGCAGGTGGCACTAGAGGGAGGAGA
CTGGGTCTTGAGGGTGGAGGACGTGTCGCATGGCGAATGTCCAGACGAAG
ATGGGAGCACCGGCAGGGCAAGATCGGCGGCATCAGCGGAATCGTTCGTG
TCGCAAGTCGTTGTACCGGCGACGACGGCCACGCACGAAGAGCGCAACAC
GTTCCCTCCGCTACCCGTGGAGACGGTCAAGCTGGAGCGGGTTTAGCTTT
CGGCGGGGGCTTGGCAGGTGGTGCTGACATCATGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig174:13424..18309+

>mRNA_Ecto-sp13_S_contig174.5206.1 ID=mRNA_Ecto-sp13_S_contig174.5206.1|Name=mRNA_Ecto-sp13_S_contig174.5206.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2955bp|location=Sequence derived from alignment at Ecto-sp13_S_contig174:13424..18309+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGCTAACTACACGGGAGAGGTTGATCTGCAATTCTTGCGCCACGG
ACAAGGACAATACCGATATCCCAACAGCGTTTTTAGATACACGGGAAAAT
GGAACACAGGGACGAAAGGCGGGCTAGGCGTGTTCGAGGTCGTGGGGGGG
AGCACATACGAGGGTACCTTCGTAGACGGGGAACTAGAAGGGAAGGGTTC
GAAGCTGTGGGCCGATGGACGACGTTACGAGGGAGAGTTTGACAGGGGGG
AGGCCAGTGGGGAAGGGCATTTCACCTCTCCTGCTGGCGAATCGTACGTC
GGAACGTGGGCCCTCAACAAACGACATGGGCGAGGCAAGCTAGTTTTGCC
GAACGGCGAAGGAAGCTACGTCGGAGAGTTTCAGAGGCACAGGTTTCACG
GGGATGGCCAACTTGTTCTCGCGAACGGCTTTCAGTTCACGGGAGCATTC
TCCGGCGGCCTCCCACATGGTGCTGGCGCTGCTGTGTACCCTGGCGGAAG
CTTGTTCCACGGCCCATTCGACAAAGGCCGAAACCACGGACGTGGGGGGA
AGTACGTGTGCGGTGTCACAGGTATCTGCTGGACTGGTGAGTGGGTAGAG
GGCAAGGCGAAGGGGTTGCCGTCGAAATGGGAACTAGAGCTGGACGGCGA
CAACAAAAGCTTAAGGGGCGGAGGGGACAGCGTCGGCCAGGCAACGCCGG
CGAAGCCTCGCGCGAAGGCAGAAAAGGGCGGCGGTGGGAAGAAAGGCGCC
AAGGCTTCCAAGAAAGCTGTTGAGGACCCTGAGACGGATGCTGCCGACAA
ACCAGTGATCGCCCATGTTAATGACGACGGGGACGTCGCCGCTTTATGGT
GTCGCTGTGTGCGGGACGTCCAGGACATTCCCCAACCACCGCCGATACCT
TCAGAGCTCCAGGAAGGTGTTGTTGATGAGTTGACACAACATGCAAAGGA
GCACCAGCGAGAAGTCGTGTCCGACGAGAGCGGGAGGACACTGACCGTCA
CTCTGCACGAGGTGACGGAGTCTCCGCAACCGGGTTCGATCAGCGATCCT
GTCCCGTTCTTCGTTCGTAGACCTGACGCCACTGACGTTTCGGAAAGTCT
CGGCCGGTTCCCGGTAGAAGGGCTTTTAGCCCTGTTTCACCTCGACGAGC
GGTGCTACCCAAAGGGGACAACCGGCGACGGCAGGACTCTTCTCATCGTG
CCCGGAGCGAAGCCGGCGCCCGACACCCCCGCCGAAGAAGCTGAGGTTTC
GCCGCCCGCCAAAGGGAGCAAAGCAGCGGCCGCGAAGAGTAAAGGGGGCG
TCAAGGGCGAGAGCGAGCCAAGACCTTCCGGGGACGATGGCATCGAAGGA
GTGTGGCAGGTGATCAGGAGCGAGGTTCAATCAAACCGCTGTCTCGTGAT
TAGGGCCGGGGAAAACTTCTCGCTAAGGACCCCACCGCTGTTTGACAAGG
CGCTCGGCAAAACGAAAGCACAAAAAGATGGAGAGAGGAGAAATAGTGTC
CTAGACTCTGAAGACAACGCAGGTATCCTTGAAGGGGGTGGAGTGCCGCC
CGAAGAGGAGAAAACGAGGGAAGAGGATGTACCAGGAGTCGTCCACGGCA
GCTCAAAATCGGTGGAAATATTGCAACAGATCGAAAACGCGAACGATGCT
GGAGAGCAGCGCACGATGATGGTCCAGCAGCATTCCCCATTCGCTGTGTG
TCTCGATTTCAGATTAGACCTGATGGATGCCCAAAAATGGGAGAGCACGG
GCGGTGAAGGCGGCCAGGAGAAACGTTTGGAAGAAGAAAAGACAATGAGG
ATCATCTTGTGCGGCAACGATGTCGAAGTTTCTGCCGTAATTCGCCTCTG
GATCCCTCCTGCGGAACCGCCCGTTGGTGCTGCTGATGATGTCGGCATGG
AGGCAGACCGCCCGACGGAAATGTCCGGAAGTGGTGCTTCTGGTGCCCTC
GCGAAAGCCGGCGATTCGAGACTCAGTGCGAAGGGTGGAGCCCTCGATAA
CGCGTCTCCGACCACGTTGATCTCCCCTCGTAGCGGTGGAAATGCCATCG
ACGACTCTAGCAGCCTTCCCACAACCCCTACTTGGTACCTCCACGCAATA
TCGATTCGCTGTGGATCTTTCGTTGGGACGGTGCCGTGCGCGAATCCAGA
AGAGCGCGCCTTGCGACGAAGAGAGCCCACTACCTCTGCGTCGGAGTCAT
GGCCTTCGGCAGGAGCCGCATCTTCGCGGTCAGGAAGAGGCTTCGAATGC
CACTTCGCCGAGTGGCACGCCCTCGCGGTCATCGCTAGCCCCGAACGGGT
GCTCTCGCTGTGCATCGATGGAGAAGAACTCGAATTGCTACAAGACGCGG
AAGGCACTGCTGTTGCAGCCGGCATCGGTTGCGACGAGTCGGAGCTATCG
GCGAGCGATGCCGTGGTTTTGGGAGGTGGGGCGGGTGGGGAGTGGGCGAG
TCTCGCGGTCAAGAACCTTGCTGTGTACAACAAATCGCCTGGCATCGACC
AGCTCCGTGCGATAACGCAAGTGTTCCGGGTGTGGAGGGAGCGGAAGGAA
GCTGCTAGAGCGGCTGATGTGCAGGAAGATGAGCGCTGGGAGGAGGAGAC
TAGGAGAGCGGAGGAAGAGGAAAGGGAACCCGGGGCAGGAGAAAGACCGG
AGTGGGTTGTGGGGGCTGACCGCGAAACGATCTTGCACAAGAAAACCGTT
CGCGGCGAGGCGAAAATAGACAAGATCGTATTACCAAAGGTGGCACTAGA
GGGAGGAGACTGGGTCTTGAGGGTGGAGGACGTGTCGCATGGCGAATGTC
CAGACGAAGATGGGAGCACCGGCAGGGCAAGATCGGCGGCATCAGCGGAA
TCGTTCGTGTCGCAAGTCGTTGTACCGGCGACGACGGCCACGCACGAAGA
GCGCAACACGTTCCCTCCGCTACCCGTGGAGACGGTCAAGCTGGAGCGGG
TTTAG
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