mRNA_Ecto-sp13_S_contig174.5205.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig174.5205.1
Unique NamemRNA_Ecto-sp13_S_contig174.5205.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig174.5205.1 vs. uniprot
Match: D8LS96_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS96_ECTSI)

HSP 1 Score: 494 bits (1272), Expect = 4.740e-167
Identity = 328/358 (91.62%), Postives = 329/358 (91.90%), Query Frame = 2 
Query:  191 MSIVNVTNVVVLDNPTAFKNPLTFEVTFECLEALDADLEWKVIYVGSAEDTQYDQVLEEVDVGPIPIGVNKFVLTAESPDPATIPPTDLVGVTVTLITCCYKQREFIRVGYYVNNEHNDPAVNAEIQEGRIPPADTLDPAHITRNILADKPRVTRFPIDWNAAPGEAGAAXXXXXXXXXXTDGAAADGAMDEDDEMGVENGVDEGEEAAALASAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEADXXXXXXXXSSGAEEMEDVAGDEARAGTAAMRGXXXXXXXXXXXXXXTPVAAGLSTRVLSAASDRNENIQPIVLPNSGSAPASATHVAAVAEQVRCGKADGIAAAPAATTA 1264
            MSIVNVTNVVVLDNPTAFKNPLTFEVTFECLEALDADLEWKVIYVGSAEDTQYDQVLEEVDVGPIPIGVNKFVLTAESPDPATIPPTDLVGVTVTLITCCYKQREFIRVGYYVNNEHNDPAVNAEIQEGRIPPADTLDPAHITRNILADKPRVTRFPIDWNAAPGEAGAA XXXXXXXXX     ADGAMDEDDEMGV+NGVDEGE         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   XXXXXXXXSSGAEEMEDVAGDEARAGTAAMRG  XXXXXXX     TPVA GLSTRVLSAASD NENIQPIVLPNSGSAPASAT VAAVAEQV CGKADGIAAAPAATTA
Sbjct:    1 MSIVNVTNVVVLDNPTAFKNPLTFEVTFECLEALDADLEWKVIYVGSAEDTQYDQVLEEVDVGPIPIGVNKFVLTAESPDPATIPPTDLVGVTVTLITCCYKQREFIRVGYYVNNEHNDPAVNAEIQEGRIPPADTLDPAHITRNILADKPRVTRFPIDWNAAPGEAGAAAXXXXXXXXXXXXXXADGAMDEDDEMGVDNGVDEGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGAEEMEDVAGDEARAGTAAMRGAAXXXXXXXA----TPVAGGLSTRVLSAASDPNENIQPIVLPNSGSAPASATQVAAVAEQVSCGKADGIAAAPAATTA 354
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BLAST of mRNA_Ecto-sp13_S_contig174.5205.1 vs. uniprot
Match: A0A7S0FP47_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FP47_9STRA)

HSP 1 Score: 216 bits (550), Expect = 7.120e-62
Identity = 115/212 (54.25%), Postives = 143/212 (67.45%), Query Frame = 2 
Query:  191 MSIVNVTNVVVLDNPTAFKNPLTFEVTFECLEALDADLEWKVIYVGSAEDTQYDQVLEEVDVGPIPIGVNKFVLTAESPDPATIPPTDLVGVTVTLITCCYKQREFIRVGYYVNNEHNDPAVNAEIQEGRIPPADTLDPAHITRNILADKPRVTRFPIDWNAAPGEAG------AAXXXXXXXXXXTDGAAADGAMDEDDEMGVENGVDEGE 808
            M++VNV N+VVLDNPT F+NP  FE+TFECL+ L+ DLEWKV+YVGSAED   DQ+L+E+ VGP+P+GVNKFVL A++PDPA+IP  D++GVTV L+TC YK+REFIR+GYYVNNE+ DP       +  + P   LD   + R ILADKPRVTRF I W+ A  E G      A            DG A  GA+D   E   E G D+GE
Sbjct:    1 MALVNVVNMVVLDNPTNFRNPFQFEITFECLQELEDDLEWKVVYVGSAEDMTADQILDEILVGPVPVGVNKFVLQADAPDPASIPNADILGVTVVLVTCSYKEREFIRIGYYVNNEYADP------YDPEVGPPSPLDIKKVVRTILADKPRVTRFNIPWDGAEEEKGPPPQQEAEGDVSMEVADDDDGLA--GAVDYSGEEDEEGGDDDGE 204
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BLAST of mRNA_Ecto-sp13_S_contig174.5205.1 vs. uniprot
Match: A0A7S4WBT6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4WBT6_9STRA)

HSP 1 Score: 213 bits (541), Expect = 1.440e-60
Identity = 99/161 (61.49%), Postives = 127/161 (78.88%), Query Frame = 2 
Query:  191 MSIVNVTNVVVLDNPTAFKNPLTFEVTFECLEALDADLEWKVIYVGSAEDTQYDQVLEEVDVGPIPIGVNKFVLTAESPDPATIPPTDLVGVTVTLITCCYKQREFIRVGYYVNNEHNDPAVNAEIQEGRIPPADTLDPAHITRNILADKPRVTRFPIDWN 673
            M++VNV N++VLDNPTAF NP  FE+TFECL+ L+ DLEWKV+YVGSAE +++DQVL+E+ VGP+P+G+NKFVL AE PDP  IPP D++GVTV L+TC Y++REF+R+GYYVNNE++      E  E   PP   ++   +TR ILADKPRVTRFPI WN
Sbjct:    1 MALVNVVNMMVLDNPTAFLNPFQFEITFECLQELEEDLEWKVVYVGSAESSEHDQVLDEILVGPVPVGINKFVLQAEPPDPRRIPPNDIIGVTVVLVTCAYREREFVRIGYYVNNEYS-----GEYDEETGPPK-PIELGKVTRMILADKPRVTRFPIPWN 155
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BLAST of mRNA_Ecto-sp13_S_contig174.5205.1 vs. uniprot
Match: A0A7S2LP02_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LP02_9STRA)

HSP 1 Score: 212 bits (540), Expect = 2.950e-60
Identity = 102/163 (62.58%), Postives = 126/163 (77.30%), Query Frame = 2 
Query:  191 MSIVNVTNVVVLDNPTAFKNPLTFEVTFECLEALDADLEWKVIYVGSAEDTQYDQVLEEVDVGPIPIGVNKFVLTAESPDPATIPPTDLVGVTVTLITCCYKQREFIRVGYYVNNEHNDPAVNAEIQEGRIPPADTLDPAHITRNILADKPRVTRFPIDWNAA 679
            M++VNV N+VVLDNPT F+NP  FE+TFECL+ LD DLEWKV+YVGSAED+ +DQVLEEV VGP+P+GVNKFVL A++ DPATIP  D++GVTV L+TC YK +EF R+GYYVNNE   P      + G+      +D + + R ILADKPRVTRFPIDW+ A
Sbjct:    1 MALVNVVNMVVLDNPTHFRNPFQFEITFECLQELDDDLEWKVVYVGSAEDSTHDQVLEEVLVGPVPVGVNKFVLQADAADPATIPKEDILGVTVVLVTCSYKNQEFARIGYYVNNEMELPPGTPVDESGKPIEDIPIDYSKLMRQILADKPRVTRFPIDWSGA 163
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BLAST of mRNA_Ecto-sp13_S_contig174.5205.1 vs. uniprot
Match: A0A7S1C5P9_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5P9_9STRA)

HSP 1 Score: 208 bits (530), Expect = 7.730e-60
Identity = 101/160 (63.12%), Postives = 122/160 (76.25%), Query Frame = 2 
Query:  191 MSIVNVTNVVVLDNPTAFKNPLTFEVTFECLEALDADLEWKVIYVGSAEDTQYDQVLEEVDVGPIPIGVNKFVLTAESPDPATIPPTDLVGVTVTLITCCYKQREFIRVGYYVNNEHNDPAVNAEIQEGRIPPADTLDPAHITRNILADKPRVTRFPIDW 670
            M+ VNV N+ VLDNPTAF NP  FEVTFEC+  L  DLEWKV+YVGSAE  ++DQ L+ V VGP+P+GVNKFV+    PDP+ IP TD++GVTV LITC YK +EFIRVGYYVNNE  +     E+ EG  PP D ++PA + RNILA+KPRVTRFP+DW
Sbjct:    1 MASVNVLNISVLDNPTAFTNPFQFEVTFECVAELSDDLEWKVVYVGSAESDKFDQELDNVLVGPVPVGVNKFVMQTAPPDPSRIPKTDVLGVTVVLITCSYKSQEFIRVGYYVNNEWGE-----ELAEGEAPPED-MEPAKVVRNILAEKPRVTRFPVDW 154
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BLAST of mRNA_Ecto-sp13_S_contig174.5205.1 vs. uniprot
Match: A0A6G0WHB9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHB9_9STRA)

HSP 1 Score: 206 bits (525), Expect = 5.310e-58
Identity = 103/167 (61.68%), Postives = 119/167 (71.26%), Query Frame = 2 
Query:  191 MSIVNVTNVVVLDNPTAFKNPLTFEVTFECLEALDADLEWKVIYVGSAEDTQYDQVLEEVDVGPIPIGVNKFVLTAESPDPATIPPTDLVGVTVTLITCCYKQREFIRVGYYVNNEHNDPAVNAEIQEGRIPPADTLDPAHITRNILADKPRVTRFPIDWNAAPGEA 691
            M+ V +TN+ VLDNPTAF NP  FEVTFEC   L+ DLEWK+ YVGSAED   DQVLEEV VGP+P+G NKFV  +E PDPA IP  D +GVTV L+TC YK REF+RVGYYVNN++ DP +          P   +D   + RNILADKPRVTRFPIDW  APG A
Sbjct:    1 MAYVTLTNITVLDNPTAFTNPFQFEVTFECAHPLEDDLEWKITYVGSAEDESRDQVLEEVLVGPVPVGTNKFVFQSEPPDPAAIPEEDKIGVTVVLVTCSYKSREFVRVGYYVNNDYTDPFLLEN-------PPPVVDIHKLQRNILADKPRVTRFPIDW--APGSA 158
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BLAST of mRNA_Ecto-sp13_S_contig174.5205.1 vs. uniprot
Match: A0A024TEU9_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024TEU9_9STRA)

HSP 1 Score: 207 bits (526), Expect = 5.390e-58
Identity = 106/169 (62.72%), Postives = 121/169 (71.60%), Query Frame = 2 
Query:  191 MSIVNVTNVVVLDNPTAFKNPLTFEVTFECLEALDADLEWKVIYVGSAEDTQYDQVLEEVDVGPIPIGVNKFVLTAESPDPATIPPTDLVGVTVTLITCCYKQREFIRVGYYVNNEHNDPAVNAEIQEGRIPPADTLDPAHITRNILADKPRVTRFPIDWNAAPGEAGA 697
            M+ V +TN+ VLDNPTAF NP  FEVTFEC   L+ DLEWK+ YVGSAED   DQVLEEV VGP+P+G NKFV  +E PDP  IP  D VGVTV L+TC YK REF+RVGYYVNN++ DP +         PPA  +D   + RNILADKPRVTRFPIDW  APG  GA
Sbjct:    1 MAYVTLTNITVLDNPTAFTNPFQFEVTFECAHPLEDDLEWKITYVGSAEDESRDQVLEEVLVGPVPVGTNKFVFQSEPPDPNNIPEEDKVGVTVVLVTCSYKSREFVRVGYYVNNDYTDPFLLEN------PPA-VVDIHKLQRNILADKPRVTRFPIDW--APGATGA 160
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BLAST of mRNA_Ecto-sp13_S_contig174.5205.1 vs. uniprot
Match: A0A3R8D5G5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R8D5G5_9STRA)

HSP 1 Score: 204 bits (519), Expect = 8.260e-58
Identity = 105/169 (62.13%), Postives = 121/169 (71.60%), Query Frame = 2 
Query:  191 MSIVNVTNVVVLDNPTAFKNPLTFEVTFECLEALDADLEWKVIYVGSAEDTQYDQVLEEVDVGPIPIGVNKFVLTAESPDPATIPPTDLVGVTVTLITCCYKQREFIRVGYYVNNEHNDPAVNAEIQEGRIPPADTLDPAHITRNILADKPRVTRFPIDWNAAPGEAGA 697
            M+ V +TN+ VLDNPTAF NP  FEVTFEC   L+ DLEWK+ YVGSAED   DQVLEEV VGP+P+G NKFV  +E PD + IP  D VGVTV L+TC YK REF+RVGYYVNN++ DP +         PPA  +D   + RNILADKPRVTRFPIDW  APG  GA
Sbjct:    1 MAYVTLTNITVLDNPTAFTNPFQFEVTFECAHPLEDDLEWKITYVGSAEDESRDQVLEEVLVGPVPVGTNKFVFQSEPPDSSIIPEEDKVGVTVVLVTCSYKSREFVRVGYYVNNDYTDPFLLEN------PPA-IVDIHKLQRNILADKPRVTRFPIDW--APGATGA 160
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BLAST of mRNA_Ecto-sp13_S_contig174.5205.1 vs. uniprot
Match: A0A067BZQ2_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BZQ2_SAPPC)

HSP 1 Score: 206 bits (523), Expect = 8.760e-58
Identity = 101/160 (63.12%), Postives = 120/160 (75.00%), Query Frame = 2 
Query:  191 MSIVNVTNVVVLDNPTAFKNPLTFEVTFECLEALDADLEWKVIYVGSAEDTQYDQVLEEVDVGPIPIGVNKFVLTAESPDPATIPPTDLVGVTVTLITCCYKQREFIRVGYYVNNEHNDPAVNAEIQEGRIPPADTLDPAHITRNILADKPRVTRFPIDW 670
            M+ V +TN+ VLDNPTAF NP  FEVTFEC   L+ DLEWK+ YVGSAED   DQVLEEV VGP+P+G NKFV  +E P+PA IP  D +GVTV L+TC YK REF+RVGYYVNN+++DPA+         PPA+ +D   + RNILADKPRVTRFPIDW
Sbjct:    1 MAYVTLTNITVLDNPTAFTNPFQFEVTFECAHPLEDDLEWKITYVGSAEDESRDQVLEEVLVGPVPVGTNKFVFQSEPPNPALIPDEDKIGVTVVLVTCAYKGREFVRVGYYVNNDYSDPALVEN------PPAN-VDITKLARNILADKPRVTRFPIDW 153
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BLAST of mRNA_Ecto-sp13_S_contig174.5205.1 vs. uniprot
Match: A0A6T6GI14_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A6T6GI14_9STRA)

HSP 1 Score: 204 bits (520), Expect = 1.370e-57
Identity = 99/171 (57.89%), Postives = 126/171 (73.68%), Query Frame = 2 
Query:  191 MSIVNVTNVVVLDNPTAFKNPLTFEVTFECLEALDADLEWKVIYVGSAEDTQYDQVLEEVDVGPIPIGVNKFVLTAESPDPATIPPTDLVGVTVTLITCCYKQREFIRVGYYVNNEHNDPAV---------NAEIQEGRIPPA--DTLDPAHITRNILADKPRVTRFPIDW 670
            M++VNV ++VVLDNPT F NP  FE+TFECL+ L+ DLEWKV+YVGSA+D+ +DQVL+EV VGP+P+G NKFVL A++PDP+ +   DL+GVTV L+TC YK+REF+RVGYYVNNE+NDP           N E       P+  + +   HI R ILADKPRVT+FPI W
Sbjct:    1 MALVNVVDMVVLDNPTCFSNPFQFEITFECLQELEDDLEWKVLYVGSAKDSSHDQVLDEVLVGPVPVGTNKFVLQADAPDPSRLATDDLLGVTVVLVTCSYKEREFVRVGYYVNNEYNDPNALPPPPTMGDNGEAVPAAATPSLPNPIPIEHIQRQILADKPRVTKFPISW 171
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig174.5205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS96_ECTSI4.740e-16791.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0FP47_9STRA7.120e-6254.25Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S4WBT6_9STRA1.440e-6061.49Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
A0A7S2LP02_9STRA2.950e-6062.58Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S1C5P9_9STRA7.730e-6063.13Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A6G0WHB9_9STRA5.310e-5861.68Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024TEU9_9STRA5.390e-5862.72Uncharacterized protein n=4 Tax=Aphanomyces TaxID=... [more]
A0A3R8D5G5_9STRA8.260e-5862.13Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A067BZQ2_SAPPC8.760e-5863.13Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A6T6GI14_9STRA1.370e-5757.89Hypothetical protein n=1 Tax=Craspedostauros austr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig174contigEcto-sp13_S_contig174:8092..13202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score495.7
Seed ortholog evalue1.8e-137
Seed eggNOG ortholog2880.D8LS96
Preferred nameASF1
Model size2278
KEGG koko:K10753
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000785,GO:0000790,GO:0001932,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006335,GO:0006336,GO:0006337,GO:0006338,GO:0006342,GO:0006348,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007610,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009791,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0016043,GO:0016458,GO:0016567,GO:0016569,GO:0016570,GO:0016573,GO:0016574,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0018991,GO:0019098,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019953,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0030466,GO:0031056,GO:0031058,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031497,GO:0031498,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032784,GO:0032786,GO:0032968,GO:0032984,GO:0032986,GO:0033043,GO:0033044,GO:0033523,GO:0033554,GO:0034243,GO:0034622,GO:0034641,GO:0034645,GO:0034723,GO:0034724,GO:0034728,GO:0035065,GO:0035066,GO:0036211,GO:0040029,GO:0042325,GO:0042393,GO:0043044,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043486,GO:0043543,GO:0043618,GO:0043620,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044706,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048232,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051704,GO:0051716,GO:0060255,GO:0060378,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070647,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:1901360,GO:1901564,GO:1901576,GO:1901983,GO:1901985,GO:1902275,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905269,GO:2000112,GO:2000113,GO:2000756,GO:2000758,GO:2001141,GO:2001252
Exons5
EggNOG free text desc.chromatin assembly or disassembly
EggNOG OGsCOG5137@1,KOG3265@2759
Ec32 ortholog descriptionHistone chaperone, ASF1-like
Ec32 orthologEc-12_004340.1
Cds size1077
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig174.5205.1prot_Ecto-sp13_S_contig174.5205.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig174 9103..13012 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462907.6459172-UTR-Ecto-sp13_S_contig174:8091..91021681462907.6459172-UTR-Ecto-sp13_S_contig174:8091..9102Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig174 8092..9102 -
1681462907.7109103-UTR-Ecto-sp13_S_contig174:13012..132021681462907.7109103-UTR-Ecto-sp13_S_contig174:13012..13202Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig174 13013..13202 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462907.6575184-CDS-Ecto-sp13_S_contig174:9102..95221681462907.6575184-CDS-Ecto-sp13_S_contig174:9102..9522Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig174 9103..9522 -
1681462907.6679635-CDS-Ecto-sp13_S_contig174:9874..101501681462907.6679635-CDS-Ecto-sp13_S_contig174:9874..10150Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig174 9875..10150 -
1681462907.679845-CDS-Ecto-sp13_S_contig174:10545..106971681462907.679845-CDS-Ecto-sp13_S_contig174:10545..10697Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig174 10546..10697 -
1681462907.6891649-CDS-Ecto-sp13_S_contig174:11169..112891681462907.6891649-CDS-Ecto-sp13_S_contig174:11169..11289Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig174 11170..11289 -
1681462907.7006536-CDS-Ecto-sp13_S_contig174:12903..130121681462907.7006536-CDS-Ecto-sp13_S_contig174:12903..13012Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig174 12904..13012 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig174.5205.1

>prot_Ecto-sp13_S_contig174.5205.1 ID=prot_Ecto-sp13_S_contig174.5205.1|Name=mRNA_Ecto-sp13_S_contig174.5205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=359bp
MSIVNVTNVVVLDNPTAFKNPLTFEVTFECLEALDADLEWKVIYVGSAED
TQYDQVLEEVDVGPIPIGVNKFVLTAESPDPATIPPTDLVGVTVTLITCC
YKQREFIRVGYYVNNEHNDPAVNAEIQEGRIPPADTLDPAHITRNILADK
PRVTRFPIDWNAAPGEAGAAAAAAAAAASGTDGAAADGAMDEDDEMGVEN
GVDEGEEAAALASAGAEGEGSESMGSDGDDDESVDSDGSGDAMADEADAD
ADMDADSSGAEEMEDVAGDEARAGTAAMRGAAAAAAAVATEAAATPVAAG
LSTRVLSAASDRNENIQPIVLPNSGSAPASATHVAAVAEQVRCGKADGIA
AAPAATTA*
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mRNA from alignment at Ecto-sp13_S_contig174:8092..13202-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig174.5205.1 ID=mRNA_Ecto-sp13_S_contig174.5205.1|Name=mRNA_Ecto-sp13_S_contig174.5205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig174:8092..13202- (Ectocarpus species13 EcNAP12_S_4_19m)
CGACAACCCTTCTCTTCCTAGCGATCCGCACGCCTTCCTTTCCCGTCAAG
CCCGTCCAGTCTTGCCAGTTGCTTGCCAAGGTTGAAATTTGAAAAAGCGT
TTGCTTTTCAGGAAAGAGACGGGGGAGGGAGACACTGGGAGCAGGAGGAG
GAACGCCGGAGAGACAGAGAGTCCGTGACAAACGCACGCCATGTCTATCG
TAAACGTCACCAACGTCGTCGTCCTGGACAACCCCACCGCTTTCAAGAAC
CCTCTCACTTTTGAGGTCACCTTTGAATGCCTCGAAGCGTTGGATGCTGG
TAAGACAACAGCGGTGAAGGTTTGGCCCCCATTTCTGTAGTATTTTTTTT
CAAATTTTGAATGCCAGTGTTGGAGGTTGGAGGTTGGAGGTCCCAGGAGG
AGGAGCGCTTGCAGTTTGTGCGTCGCCATCCCTTGGTTCTGCGCGTAGCG
TGACCGGCGCAATAGTTGTGCGGTTGGACCTCTCGCGCGTGCCAATTTCT
TGATCGCACCACCCCTTAGAGAAGTTCCTCTTGGTCTCTCTGGCAGTGTA
CTGCAGCAGTACATGCACTCTGGAGCGTTCTCTGGGTTGTCTTTTAAGGG
GGGACTGCTGTAGGGTTGCTGGGAAGCTGTGGGAAGGAACCGATTTTGCT
TTTTCGGATTGCCGATGATTTCCCGATGATTGCAACAGCGCGCATATGAG
TAAAGCAGCGGGAGCAGCAGCGGGCTAGTTGTATTGTTGGGATGATGCAG
CGGTCGAATCCCCATTCCCTGCCGGGCTTACATCGCACGTTGTGCGTTAT
TTTTTTTATTTTATCTCGTTTCAACAGAAGGCATATGTTCAGTACACGGA
GGTTATGTACGTAGTTCTTAGACCGAGGGGCAGATTATTCGCGATTTTGT
GTGTATATACCCGCATGCCCTTTCAGGCAGGACGGAAATAAGAGTGTCCA
AAATTAAAAATGTCCAAAATTAAAAATTTACCGCCGTGGTGGCGCGTCCA
TATTGTTCCCCCGCTCTGTGCGTCATCGCGACGTCCCCGGTACAAAATAA
CGAAGCCTCGTGAGTAGGATACCTGCTCTTGTGCGTGTGGCTGATGTAGT
TGAAATGCTTTGTAGCCTATCGAATCGAAAACCCATTTTTTTTTTTAGTC
TTCCCTAGTTCCGGGAAAAATTAATTTTATCGTGCATCCATGAGCAAACC
GAGAATGAAACCAAGTTTGTTGATTTTTGGCTTGGCGTACCATGTGCATA
CATCGCGGTGAAAAATTCGTTTGCGGACGTCGTGCGTGCAGAAGTCGAAG
AGATGCTCTGTCCAACACCGGCTATCAACCTCGACTTGGCCCGAAACTCG
GTTGTATTGTGCTCTTCTCAGCATGGCGAAACGACGGGCCGTGCATGTGC
TGTCTTTTTCAAATTGCGACCGCCTTTTTGTAGGATCCGTCTTCAACCCG
TGATTTTACCTTTCAAGCTCCTTGGTCGAACCCACAACGATCCCCTTTTT
TTCGTTCGTGTTGTCTTTGCCTCTTTTCCCGTCATACCCGAGTGACTAAA
CTGCAGTGGCATTGAGGATGCATACGTGTGGTTATCTTACTCACCAAAAA
TTGCTGCGGTTCCTCGAATCAATTCTCACATGCGACGGGGAAGAGATCGA
GTGCCCCGGACTCAACGCAGTTTTTTTTTGCTGTTGTACAGTCAACGCGC
TCGCAATTGTTAAACCAATGGCGGTGGTAGCTAATCTACGCACATTTTGA
CGTAGACGAGGTCATCCACAACAATAATTCTACTCAAAACCTCCCGTCAC
TTCCCTGGCCCCACAACGATTTCACCCGCCCTGCCCCACTACTTGCGTCG
TTATGGACGTGTGCGTACAACACACCTTCATATGTTTTTGCCCCGCGGGT
TGCATGGCGACAGATCTGGAGTGGAAAGTGATTTATGTTGGAAGCGCGGA
GGACACTCAGTATGACCAGGTGCTCGAGGAAGTCGACGTCGGCCCAATCC
CGATCGGCGTCAACAAGTTCGTCCTCACAGCAGGTGCCACGAGATGTACA
GAGCGAAGTTTTGCGGGCGGGGCTTGGGTGGTCGAAACGGGGGTGGGAGG
GCGCTCGACGAGACTACTGTTTACTCCTGCTTTGCTCTTTTTTCTGTTGC
GCCCGGGGGAAGCACCAGCGGCATGGTCGTAGAATGGCGTAGGCAATGAC
GGTCTGCACGCATGATTTGCTGCGCCTGCCAAGAGGCCTGTCAATGAACG
ACCCTGTTCTCCCGGCTCTTGACGATAAGCCAACGAGGGCCGTGGCTGCT
GCTGCTCCTGCTGCTGCTGCGACGAGAAAGATTTGGTGGTTTGTCTGCCG
CTATTCACCACCAATCACCACCAATTTGAGCTGGGCGCGTCATTGCGATT
GGCTTACTGTCTTGGAGCTTGTCCCCTTGTCCCTCCATGTTGGAAACTTG
GATGTCGGAAAACGAACGCCCCCTTCCCCCCGGCTCCCTTGCTCGTGTGC
GGCAGAATCGCCCGACCCGGCCACGATCCCACCGACTGACCTGGTGGGAG
TGACGGTGACGCTCATCACGTGCTGCTACAAGCAGAGGGAGTTCATCCGC
GTGGGCTACTACGTCAACAACGAGCACAACGACCCCGCCGTCAACGCAGA
GATCCAGGTGTGCCTCCGCCCGCCGGTTCTTACCGTTTTTGTGTTCCGTG
CTTCCTGTCGGATTCCGTAACATGTTGTGCCGCATTCCTGTGAGTTTCTC
CGTGTTTCCGGTTGTGGCGAGAGAGGGAAGCGGGTGATGGTATACAAGGG
AAGCAGCACTCTTGTTGTTGTGTAGGCGCTTGTTTGCCACCCCGACGACG
CCCGCCCGCAGGCCCCCGGCAACGCTGGCTGTTGGTACTGAAGCCGACTT
GATTTTTTTTCGTGGCCATCGCCGGGTACAACAGGAGGGGCTTTTTTTTC
GTGTTGAGGACATGTCGGCCTGCGGGATGTCGCTATAGCGCTCACGCTGC
TGCCCCCCCCCCCCCCCTTGTTTTGTCACCGTTTTGTGTTGTGCATCGAC
AGGAGGGACGTATTCCCCCAGCCGATACGCTGGACCCGGCGCACATCACA
AGAAATATTCTGGCAGACAAGCCCCGCGTCACGCGCTTCCCGATCGACTG
GAACGCGGCTCCTGGGGAAGCAGGGGCTGCCGCCGCTGCTGCTGCTGCCG
CCGCCTCCGGTACTGATGGGGCGGCTGCTGACGGTGCAATGGATGAGGAC
GACGAGATGGGGGTGGAAAACGGGGTAGATGAGGGAGAGGAGGCGGCCGC
GCTTGCAAGCGCAGGAGCAGAGGGAGAGGTGATACTTGGTGTGGTTTGTG
GATACCGAAGTGTCTTCTGTGAATACCCCCGCCCCCGAAAAAGAGCGAAC
AAAAAAACTACGAGAACGCCCCGGTAGCCTTCTTTACACTTTGTTCCCTT
TCGCCCGAAGTGTCTAGGCGCCGCCAGTGGGGCTTTCACACAGGGAATGT
GCTGGATGTAGATCGACGGGGTTGTTGACGGCATGTAGTGCCTTCGTGCC
TGCTATACAATTAGCAAGTGTATTTGGCTGTCCTCCTCCCCCAAACCGAA
ACAAAGTTAGTCGAACGTCAAATTGATCCCCCCCCCCCCCCCCCCCCGTG
TGTGAATTTTTATTTGTTGTGGTGCGACAGGGCTCCGAGAGCATGGGATC
GGACGGGGACGATGACGAGAGCGTCGATTCCGACGGTTCAGGGGACGCGA
TGGCCGACGAAGCCGATGCCGATGCGGACATGGACGCGGATAGCAGCGGC
GCCGAGGAGATGGAAGACGTTGCAGGAGACGAGGCGAGGGCCGGGACGGC
GGCAATGAGGGGGGCGGCGGCGGCGGCGGCGGCGGTGGCGACAGAGGCGG
CGGCCACGCCAGTGGCGGCAGGGTTGTCGACAAGAGTGCTGTCGGCGGCG
AGCGACCGAAACGAGAACATCCAGCCGATCGTTTTGCCCAACAGCGGATC
AGCACCAGCAAGTGCTACGCATGTGGCGGCGGTGGCGGAACAGGTTCGCT
GCGGGAAAGCGGACGGGATCGCAGCAGCACCAGCGGCGACAACAGCGTGA
AGCAAGTGTGACTGCCGCTGTCGCCGGTGGTGTGAGGGGAGACATGGCTT
TCTAAGCTGTAGCGCCGCACTGCGTTTCTTTCGCTTCGGCCCTGAGCCGG
AGGTCGCTCGATAAGGGATGCTGCAGCAACGGCTGCTCACGTGCCAAAGC
GCCCCGCTCTCCTGCCTAGTGGCAAGGGAATATCAAACTTGGCCTCATTC
ACGCGCTGTGGGGCAATGGATCCATGTCGTCGCTCATTTTGCCGGAGATT
TCGTGTCGTGACTGGTGTGGACGGACTAGAACATGTGCATAGCTTGACCT
TGGTTGATGTGCTCCGAGGGCAGTTTTTGTGTGGCAGCTGCCCCAAGGAG
GAATCGAGGCGAGAGGTCGATCATCCTGCGGGCTGTCGGCCGACAGAGAC
TAAGGCGGGGATGCCGGACGATCGGACAAGAGCGTGTCAAATTTACGGGT
TTTTCAGAGTAGACATGAATGCGTATTCTGCGTGGGCTTTTTTGTGGCAC
ACCAGCCGCGCGCGTGGTGGCTCTTTACACGAGATACAGTATAGCTTCGG
TCGGCAACTGTGTCCGCAACGCTAGCTCGGTCGGCTTGAGTGTAGTATGT
ATGGTCGCGCGATTGTACAGCTGCCGCACCGATGAACACGCCGACACCAC
GTGTATGCGTGTATGGTGTACGTCGAATTCTAGATGTGTAGGGCCCGTTC
CGTTGTAAAATGCTGTGTTGGGGAGAGGATGTAGGTTGTAGGGAATCAAG
AATTGAAAGTACTAGACGGAGAACCCTCGGTGTCTCGTGTTTGCTCCAAG
CACGTTTGCTACAAGCGCGCGTGTGTTGCCACGCATGTGCTGTCAAAAAC
ATTGTGGGATACCTGCAACGATTGCTGTCTGGAATCCCACGTTCGCCTGA
TTTGAAGGTGTGCTAGCGAATCACGAGGAGCTTTAGCCGGAAATATCGTC
GAACCCTTATCAATAACTTAGTCCTCATGCAGAAGCTAGGGCTACGGGGC
GTGCCTATCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig174:8092..13202-

>mRNA_Ecto-sp13_S_contig174.5205.1 ID=mRNA_Ecto-sp13_S_contig174.5205.1|Name=mRNA_Ecto-sp13_S_contig174.5205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1077bp|location=Sequence derived from alignment at Ecto-sp13_S_contig174:8092..13202- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTATCGTAAACGTCACCAACGTCGTCGTCCTGGACAACCCCACCGC
TTTCAAGAACCCTCTCACTTTTGAGGTCACCTTTGAATGCCTCGAAGCGT
TGGATGCTGATCTGGAGTGGAAAGTGATTTATGTTGGAAGCGCGGAGGAC
ACTCAGTATGACCAGGTGCTCGAGGAAGTCGACGTCGGCCCAATCCCGAT
CGGCGTCAACAAGTTCGTCCTCACAGCAGAATCGCCCGACCCGGCCACGA
TCCCACCGACTGACCTGGTGGGAGTGACGGTGACGCTCATCACGTGCTGC
TACAAGCAGAGGGAGTTCATCCGCGTGGGCTACTACGTCAACAACGAGCA
CAACGACCCCGCCGTCAACGCAGAGATCCAGGAGGGACGTATTCCCCCAG
CCGATACGCTGGACCCGGCGCACATCACAAGAAATATTCTGGCAGACAAG
CCCCGCGTCACGCGCTTCCCGATCGACTGGAACGCGGCTCCTGGGGAAGC
AGGGGCTGCCGCCGCTGCTGCTGCTGCCGCCGCCTCCGGTACTGATGGGG
CGGCTGCTGACGGTGCAATGGATGAGGACGACGAGATGGGGGTGGAAAAC
GGGGTAGATGAGGGAGAGGAGGCGGCCGCGCTTGCAAGCGCAGGAGCAGA
GGGAGAGGGCTCCGAGAGCATGGGATCGGACGGGGACGATGACGAGAGCG
TCGATTCCGACGGTTCAGGGGACGCGATGGCCGACGAAGCCGATGCCGAT
GCGGACATGGACGCGGATAGCAGCGGCGCCGAGGAGATGGAAGACGTTGC
AGGAGACGAGGCGAGGGCCGGGACGGCGGCAATGAGGGGGGCGGCGGCGG
CGGCGGCGGCGGTGGCGACAGAGGCGGCGGCCACGCCAGTGGCGGCAGGG
TTGTCGACAAGAGTGCTGTCGGCGGCGAGCGACCGAAACGAGAACATCCA
GCCGATCGTTTTGCCCAACAGCGGATCAGCACCAGCAAGTGCTACGCATG
TGGCGGCGGTGGCGGAACAGGTTCGCTGCGGGAAAGCGGACGGGATCGCA
GCAGCACCAGCGGCGACAACAGCGTGA
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