mRNA_Ecto-sp13_S_contig174.5204.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig174.5204.1 vs. uniprot
Match: D8LS95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS95_ECTSI) HSP 1 Score: 563 bits (1452), Expect = 4.780e-199 Identity = 288/303 (95.05%), Postives = 291/303 (96.04%), Query Frame = 2
Query: 110 MLRLGSAAIVFTMLCALSGIATGSPALTSQRQWTGTRLHGVPVLPLEQGARGGAGQDGVPKELGAGLRPRESYHLSRKTFHFSTIMAFAVVYSAKLTQRDFARGMAALDACVLAGELARLRMDVVNRALFRVFGAFMRAHELKKFSGIMYCLAGLGITSAMFPKHIALLGMFQLALGDPVAALCGHATRSVAWSRVRTGKGLLGALGCATALTLANSFVLAKATFESGAPTLRRIVLAGGMIAAWAAAVEVSVPSPQKTLPCEGFPLAFDDNAALPVLGAMGAAVVFRVLGLGSCELRPWLFG 1018
MLRL SAAIVFT LCALSGIATGSPAL SQ+QWT TRLHGVPVLPL QGARGGAGQD VPKELGAGLRPRESYH+SRKTFHFSTIMAFAVVYSAKL QRDFARGMAALDACVLAGELARLR+DVVNR LFRVFGAFMRAHELKKFSGIMYCLAGLGITSAMFPKHIALLGM QLALGDPVAALCGHATRSV WSRV TGKGLLGALGCATALTLANSFVLAKA FESGAPTLRRIVLAGGMIAAWAAAVEVSVPSPQKTLPCEGFPLAFDDNAALPVLGAMGAAVVFRVLGLGSCELRPWLFG
Sbjct: 1 MLRLRSAAIVFTTLCALSGIATGSPALASQQQWTDTRLHGVPVLPLVQGARGGAGQDSVPKELGAGLRPRESYHISRKTFHFSTIMAFAVVYSAKLPQRDFARGMAALDACVLAGELARLRVDVVNRVLFRVFGAFMRAHELKKFSGIMYCLAGLGITSAMFPKHIALLGMLQLALGDPVAALCGHATRSVGWSRVGTGKGLLGALGCATALTLANSFVLAKARFESGAPTLRRIVLAGGMIAAWAAAVEVSVPSPQKTLPCEGFPLAFDDNAALPVLGAMGAAVVFRVLGLGSCELRPWLFG 303
BLAST of mRNA_Ecto-sp13_S_contig174.5204.1 vs. uniprot
Match: A0A6U5JUM7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A6U5JUM7_9STRA) HSP 1 Score: 114 bits (284), Expect = 6.690e-24 Identity = 90/259 (34.75%), Postives = 126/259 (48.65%), Query Frame = 2
Query: 308 LRPRESYHLSRKTFHFSTIMAFAVVYSAKLTQRDFARGMAALDACVLAGELARLR--MDVVNRALFRVFGAFMRAHELK-KFSGIMYCLAGLGITSAMFPKHIALLGMFQLALGDPVAALCGHATRSVAWSRVRTG-------KGLLGALGCATALTLANSFVLAKATF----ESGAPTLRRIVLAGGMIAAWAAAVEVSVPSPQKTLPCEGF-----PLAFDDNAALPVLGAMGAAVVFRVLGLGSCE----LRPWLF 1015
L+ R S +L RK H + F ++ + ++ F M L L EL R R +N AL + G +R HE+ KF+G +Y G+ +TSA+F K A LG+FQLA+ DP A+ G +TR V WSR+ +G KG LG LG A A N VL A F G L LA GM A+A +++VP+P +P + F P DDN +P+ A +F+ L SC L P++F
Sbjct: 156 LKSRNSMNLRRKVLHAGFGLFFGILNHV-VPRKYFLGAMTILSTGTLCMELLRYRPGFSWMNDALHTILGGSLRRHEMDGKFTGSLYFFVGVTVTSALFSKAAATLGIFQLAIADPSASYFGRSTRHVYWSRIESGLGGFGRNKGFLGFLGGALACVPLNYQVLRMAQFGKIVPGGQQALLTASLALGMAGAFA---DLAVPTPALVMPEKVFGVRVPPFHVDDNFVVPIFAGFAATHIFKAL---SCPTDFTLAPFVF 407
BLAST of mRNA_Ecto-sp13_S_contig174.5204.1 vs. uniprot
Match: A0A7S4AI34_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AI34_9STRA) HSP 1 Score: 112 bits (281), Expect = 3.380e-23 Identity = 90/255 (35.29%), Postives = 125/255 (49.02%), Query Frame = 2
Query: 308 LRPRESYHLSRKTFHFSTIMAFAVVYSAKLTQRDFARGMAALDACVLAGELARLR--MDVVNRALFRVFGAFMRAHELK-KFSGIMYCLAGLGITSAMFPKHIALLGMFQLALGDPVAALCGHATRSVAWSRVRTG-------KGLLGALGCATALTLAN----SFVLAKATFESGA-----PTLRRIVLAGGMIAAWAAAVEVSVPSPQKTLPCEGF-----PLAFDDNAALPVLGAMGAAVVFRVLGLGSCEL 1000
L+ R + + RK H + M FA ++ + + F GM L L EL R R D +N++L V G +R +E++ KF+G +Y +G+ +TS +FPK A LG+ QLA+ DP A+ G ATR V WSR+ G KG+LG LG A + N S L K T + A PT+ I LA GM A A ++ VP+P TLP P DDN +PVL + +G EL
Sbjct: 215 LKNRNAANKRRKFMHAAWGMLFASLHHF-IPRNRFLPGMTTLTTLTLIMELLRYRKGFDWMNKSLHFVLGKALRKNEMEGKFTGSLYYFSGVTLTSYLFPKSCATLGIVQLAIADPSASYFGRATRHVYWSRINNGFFGLGRNKGILGCLGGAVSCVPLNYRLLSLALVKNTGTAAARTIAKPTVLAISLALGMAGALA---DLMVPTPSLTLPKRVCGVRVPPFHLDDNIVVPVLSGWACVYILAAASIGRNEL 465
BLAST of mRNA_Ecto-sp13_S_contig174.5204.1 vs. uniprot
Match: A0A7S4EJ41_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EJ41_9STRA) HSP 1 Score: 112 bits (281), Expect = 7.110e-23 Identity = 90/255 (35.29%), Postives = 125/255 (49.02%), Query Frame = 2
Query: 308 LRPRESYHLSRKTFHFSTIMAFAVVYSAKLTQRDFARGMAALDACVLAGELARLR--MDVVNRALFRVFGAFMRAHELK-KFSGIMYCLAGLGITSAMFPKHIALLGMFQLALGDPVAALCGHATRSVAWSRVRTG-------KGLLGALGCATALTLAN----SFVLAKATFESGA-----PTLRRIVLAGGMIAAWAAAVEVSVPSPQKTLPCEGF-----PLAFDDNAALPVLGAMGAAVVFRVLGLGSCEL 1000
L+ R + + RK H + M FA ++ + + F GM L L EL R R D +N++L V G +R +E++ KF+G +Y +G+ +TS +FPK A LG+ QLA+ DP A+ G ATR V WSR+ G KG+LG LG A + N S L K T + A PT+ I LA GM A A ++ VP+P TLP P DDN +PVL + +G EL
Sbjct: 335 LKNRNAANKRRKFMHAAWGMLFASLHHF-IPRNRFLPGMTTLTTLTLIMELLRYRKGFDWMNKSLHFVLGKALRKNEMEGKFTGSLYYFSGVTLTSYLFPKSCATLGIVQLAIADPSASYFGRATRHVYWSRINNGFFGLGRNKGILGCLGGAVSCVPLNYRLLSLALVKNTGTAAARTIAKPTVLAISLALGMAGALA---DLMVPTPSLTLPKRVCGVRVPPFHLDDNIVVPVLSGWACVYILAAASIGRNEL 585
BLAST of mRNA_Ecto-sp13_S_contig174.5204.1 vs. uniprot
Match: A0A7S3PXT7_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PXT7_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 5.310e-16 Identity = 81/257 (31.52%), Postives = 119/257 (46.30%), Query Frame = 2
Query: 308 LRPRESYHLSRKTFHFSTIMAFAVVYSAKLTQRDFARGMAALDACVLAGELARLRMDV--VNRALFRVFGAFMRAHELK-KFSGIMYCLAGLGITSAMFPKHIALLGMFQLALGDPVAALCGHATRSVAWSRVRTG-------KGLLGALGCATALTLANSFVLAKATF-----ESGAPTLRRIVLAGGMIAAWAAAV---------EVSVPSPQKTLPCE----GFP-LAFDDNAALPVLGAMGAAVVFRVLGLGS 991
L+ R + +L+RK H F + + + F M L L EL R R +N L FG+ +R E+ +F+G +Y G+ IT+A+FP+ +A + +FQLAL DP A+ G TR V WSR+ G KGLLG LG A N L+KAT+ G + + + GG A A++ ++ VP+P T+P + G P DDN +P+ A +F LG S
Sbjct: 211 LKSRNNLNLNRKLMHAGCGFFFGGLNHI-VPKHIFMPCMTVLTTGSLIMELLRYRKGFGWMNDILHFCFGSCLRKSEMDGRFTGNVYYFMGVVITAALFPRDVASMAIFQLALADPSASYFGRQTRHVYWSRIENGFFGVGRNKGLLGFLGGALFCFPFNFLALSKATYFGKTTVDGISKVVPVAVPGGRQAIAIASIALGLAGAFADLCVPTPAITMPKKICGVGMPPFHVDDNIVVPIFSAFACTKIFASLGWTS 466
BLAST of mRNA_Ecto-sp13_S_contig174.5204.1 vs. uniprot
Match: M2VYP9_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VYP9_GALSU) HSP 1 Score: 60.8 bits (146), Expect = 1.220e-6 Identity = 58/206 (28.16%), Postives = 94/206 (45.63%), Query Frame = 2
Query: 320 ESYHLSRKTFHFSTIMAFAVVYSAKLTQRDFARGMAALDACVLAGELARLRMDVVNRALFRVFGAFMRAHELKKFSGIMYCLAGLGITSAMFPKHIALLGMFQLALGDPVAALCGHATRSVAWSR--VRTGKGLLGALGCATALTLANSFVLAKATFESGAPTLRRIVLAGGMIAAWAAAVEVSVPSPQKTL-PCEG-FPLAFDDN 925
E H SR+ FH S + +++ + F + + L ++ E RL +N+ R+F MR +E ++ SG+ Y LAG+ S + + + LA+GDPVAA+CG + R +++GK + G L C TL+ L + L I + ++A VE P+PQ + P FP+ DDN
Sbjct: 28 EGIHWSRRIFHTSNGILAWILFDHGRNRALFHKVVWILLLSLIFLESIRLHSLYINQLASRLFYPIMRKNETRRLSGMSYYLAGILFASYFESPIVFEVAVIHLAIGDPVAAVCGLLLFPNSRKRWILKSGKNVSGLLACWLICTLSTLCYLYWQGMRGWSIGL--IAILSSFLSAL---VESWTPTPQYIISPFPSLFPIGLDDN 228
BLAST of mRNA_Ecto-sp13_S_contig174.5204.1 vs. uniprot
Match: A0A3B1CQW6_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1CQW6_9ZZZZ) HSP 1 Score: 59.3 bits (142), Expect = 1.720e-6 Identity = 37/132 (28.03%), Postives = 60/132 (45.45%), Query Frame = 2
Query: 329 HLSRKTFHFSTIMAFAVVYSAKLTQRDFARGMAALDACV-LAGELARLRMDVVNRALFRVFGAFMRAHELKKFSGIMYCLAGLGITSAMFPKHIALLGMFQLALGDPVAALCGHATRSVAWSRVRTGKGLLG 721
H+ RK FH + VY + R + + V + G++AR+++D +NR +F FM+ E +G Y L G +F I+ ++ +++GDP AAL G V R GK + G
Sbjct: 16 HVPRKLFHLTAASMIPTVYYFEPIARQSTLYLTLIVTAVWVTGDIARIKIDSINRLFKTLFKNFMKVKEENSLTGSSYVLIGSSAALLLFSPAISCASIYFMSIGDPSAALAGKTYGRV---RFNNGKSIEG 144
BLAST of mRNA_Ecto-sp13_S_contig174.5204.1 vs. uniprot
Match: A0A1J5KF47_9PROT (Uncharacterized protein n=1 Tax=Bacteriovorax sp. MedPE-SWde TaxID=1860085 RepID=A0A1J5KF47_9PROT) HSP 1 Score: 57.4 bits (137), Expect = 8.610e-6 Identity = 35/124 (28.23%), Postives = 56/124 (45.16%), Query Frame = 2
Query: 293 ELGAGLRPRESYHLSRKTFHFSTIMAFAVVYSAKLTQRDFARGMAALDACVLAGELARLRMDVVNRALFRVFGAFMRAHELKKFSGIMYCLAGLGITSAMFPKHIALLGMFQLALGDPVAALCG 664
E + R HL R+ FH S M+ ++Y LT + + E R++ +V +RA E K S + L G+ +T FPK++AL+ +F LA+ DP +A+ G
Sbjct: 3 ETNTTTKTRADLHLPRRFFHLSMGMSCGLIYKHYLTHQQAIHILGIATCIFYVYEQIRIKYPEFRSIFSKVSNYLLRAEEQLKESASIPFLMGILLTILTFPKYMALVAIFTLAISDPFSAVIG 126
BLAST of mRNA_Ecto-sp13_S_contig174.5204.1 vs. uniprot
Match: T0RXI7_9PROT (Phosphatidate cytidylyltransferase-like protein n=1 Tax=Bacteriovorax sp. DB6_IX TaxID=1353530 RepID=T0RXI7_9PROT) HSP 1 Score: 57.4 bits (137), Expect = 1.160e-5 Identity = 53/223 (23.77%), Postives = 90/223 (40.36%), Query Frame = 2
Query: 311 RPRESYHLSRKTFHFSTIMAFAVVYSAKLTQRDFARGMAALDACVLAGELARLRMDVVNRALFRVFGAFMRAHELKKFSGIMYCLAGLGITSAMFPKHIALLGMFQLALGDPVAALCGHATRSVAWSRVRTGKGLLGALGCATALTLANSFVLAKATFESGAPTLRRIVLAGGMIAAWAAAVEVSVPSPQKTLPCEGFPLAFDDNAALPVLGAMGAAVVFRVL 979
+ R HL R+ FH S M+ ++Y LT + + E R++ +V +RA E K S + L G+ +T FPK++AL+ +F LA+ DP +A+ G R+ +G L G TL ++ A + L+RI+ +SV S + L DDN +P++ A ++ ++
Sbjct: 32 KTRADLHLPRRFFHLSMGMSCGLIYKHYLTHQQAIHILGVATCIFYIYEQFRIKYPEFKSIFSQVSKYLLRAEEQLKESASIPFLMGMLLTILTFPKYMALVAIFTLAISDPFSAVVGIMFGKTKLKENRSLEGCLAFFGS----TLMVHLIVLYALYPES--MLKRII--------------ISVLSSTFVTWFDYLELKIDDNLTIPIVTASSLWIITALI 234
BLAST of mRNA_Ecto-sp13_S_contig174.5204.1 vs. uniprot
Match: A0A4Z0KZ61_9PROT (Uncharacterized protein n=2 Tax=Halobacteriovorax TaxID=1652133 RepID=A0A4Z0KZ61_9PROT) HSP 1 Score: 55.1 bits (131), Expect = 7.130e-5 Identity = 38/119 (31.93%), Postives = 61/119 (51.26%), Query Frame = 2
Query: 311 RPRESYHLSRKTFHFSTIMAFAVVYSAKLTQRDFARGMAALDACVLAGELARLRMDVVNRALFRVFGAFM-RAHELKKFSGIMYCLAGLGITSAMFPKHIALLGMFQLALGDPVAALCG 664
+ R+ H+ R+ FHFS + ++Y LT + A L L ++R++ L ++ ++ RA E K S M L GL +T FPK IAL+ +F LA+ DP++A+ G
Sbjct: 36 KTRKDLHMPRRIFHFSMGVIAGMIYKHFLTHTQAVHILGV--ATCLFYILEQIRLNYPENKLTKLGSKYLLRAEEQLKESASMPYLMGLLLTILTFPKTIALVAIFTLAVCDPLSAIIG 152 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig174.5204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig174.5204.1 >prot_Ecto-sp13_S_contig174.5204.1 ID=prot_Ecto-sp13_S_contig174.5204.1|Name=mRNA_Ecto-sp13_S_contig174.5204.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=304bp MLRLGSAAIVFTMLCALSGIATGSPALTSQRQWTGTRLHGVPVLPLEQGAback to top mRNA from alignment at Ecto-sp13_S_contig174:3862..8064+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig174.5204.1 ID=mRNA_Ecto-sp13_S_contig174.5204.1|Name=mRNA_Ecto-sp13_S_contig174.5204.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4203bp|location=Sequence derived from alignment at Ecto-sp13_S_contig174:3862..8064+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig174:3862..8064+ >mRNA_Ecto-sp13_S_contig174.5204.1 ID=mRNA_Ecto-sp13_S_contig174.5204.1|Name=mRNA_Ecto-sp13_S_contig174.5204.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=912bp|location=Sequence derived from alignment at Ecto-sp13_S_contig174:3862..8064+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |