mRNA_Ecto-sp13_S_contig17392.5200.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17392.5200.1
Unique NamemRNA_Ecto-sp13_S_contig17392.5200.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17392.5200.1 vs. uniprot
Match: D7FUP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP9_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 1.850e-74
Identity = 122/150 (81.33%), Postives = 130/150 (86.67%), Query Frame = 1 
Query:    1 SSKKPKCGGGDPWAKKLKKPITIDTDEKLFLNELVTDLEKPPLFFVKLMSRPDATPARGPYEPGEIVVPKVNGRIVVKGPNARGEEVRVVHGVGPGDVTSLTLVADYITTRKDGQPTSDEDRHSARKSGVAHTTRAPPPGATVNPYADGL 450
            S KK KCGGG  WAKKLKK ITIDT+E+L L+ELVTDLEKPP FFVKLM  PDA PARGPYE GEIVVPKV+G IVVKGPNARGE+VR VHGV PG+VTSLTLVADYITTR DGQ TSDEDR SARKS VAHTTRA PPGAT++PYAD L
Sbjct:   35 SKKKQKCGGGVSWAKKLKKDITIDTEEELPLSELVTDLEKPPEFFVKLMKGPDAEPARGPYELGEIVVPKVHGLIVVKGPNARGEKVRAVHGVRPGNVTSLTLVADYITTRNDGQATSDEDRDSARKSVVAHTTRAAPPGATIDPYADRL 184
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BLAST of mRNA_Ecto-sp13_S_contig17392.5200.1 vs. uniprot
Match: A0A6H5JRU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRU8_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.900e-26
Identity = 64/111 (57.66%), Postives = 72/111 (64.86%), Query Frame = 1 
Query:  124 PLFFVKLMSRPDATPARGPYEPGEIVVPKVNGRIVVKGPNARGEEVRVVHGVGP-GDVTSLTLVADYITT-RKDGQPTSDEDRHSARKSGVAHTTRAPPPGATVNPYADGL 450
            P FF++L   PDATPA GPYEPGEIV                GEEVR V GV P G  +S TL ADYITT R D QP SD+DR SARK  VAHTT+  PPGA+++PYAD L
Sbjct:   28 PEFFIELTPGPDATPACGPYEPGEIV----------------GEEVRAVDGVRPRGVASSFTLGADYITTTRNDQQPVSDKDRDSARKLVVAHTTKPAPPGASISPYADRL 122
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BLAST of mRNA_Ecto-sp13_S_contig17392.5200.1 vs. uniprot
Match: D7G8P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P5_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 4.430e-20
Identity = 80/232 (34.48%), Postives = 89/232 (38.36%), Query Frame = 1 
Query:    1 SSKKPKCGGGDPWAKKLKKPITIDTDEKLFLNELVTDLE---------------------------------------------------------------------------------KPPLFFVKLMSRPDATPARGPYEPGEIVVPKVNGRIVVKGPNARGEEVRVVHGVGPGDVTSLTLVADYITTRKDGQPTSDEDRHSARKSGVAHT-TRAPPPGATVNPYADGL 450
            SSKKPKCGG +PWA KLKKPI  DT+EKL L ELVTDL                                                                                  KPP F VKLMS P A PA GPY P E  +PK NGR++VKGP ARGE                             Q T+  DR SAR+S V    +R PP GA  NP+AD L
Sbjct:  141 SSKKPKCGGRNPWAVKLKKPIIHDTEEKLTLAELVTDLNHGVAAGYDGRQMSDELNELVAEYAQSKADRPVEEQSLFALIGQDGAQTTEQRLSVAMMKGKPELGGFVGDIEQSAPEGLTNKPPEFHVKLMSGPKAAPATGPYGPDEWHIPKENGRMIVKGPMARGE-----------------------------QATTRVDRDSARQSVVDRAESRMPPIGAPHNPFADSL 343
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BLAST of mRNA_Ecto-sp13_S_contig17392.5200.1 vs. uniprot
Match: D7G3R8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3R8_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.630e-10
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 SSKKPKCGGGDPWAKKLKKPITIDTDEKLFLNELVTDL 114
            SSKKPKCGGG+PWAKKLKK I +DTDEKL L ELVTDL
Sbjct:   93 SSKKPKCGGGNPWAKKLKKDIIVDTDEKLTLVELVTDL 130
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17392.5200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FUP9_ECTSI1.850e-7481.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRU8_9PHAE1.900e-2657.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8P5_ECTSI4.430e-2034.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3R8_ECTSI1.630e-1084.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17392contigEcto-sp13_S_contig17392:2..814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size450
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-03_001510.1
Cds size450
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462907.279788-CDS-Ecto-sp13_S_contig17392:1..3341681462907.279788-CDS-Ecto-sp13_S_contig17392:1..334Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17392 2..334 -
1681462907.288999-CDS-Ecto-sp13_S_contig17392:697..8141681462907.288999-CDS-Ecto-sp13_S_contig17392:697..814Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17392 698..814 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17392.5200.1prot_Ecto-sp13_S_contig17392.5200.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17392 2..814 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17392.5200.1

>prot_Ecto-sp13_S_contig17392.5200.1 ID=prot_Ecto-sp13_S_contig17392.5200.1|Name=mRNA_Ecto-sp13_S_contig17392.5200.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=150bp
SSKKPKCGGGDPWAKKLKKPITIDTDEKLFLNELVTDLEKPPLFFVKLMS
RPDATPARGPYEPGEIVVPKVNGRIVVKGPNARGEEVRVVHGVGPGDVTS
LTLVADYITTRKDGQPTSDEDRHSARKSGVAHTTRAPPPGATVNPYADGL
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mRNA from alignment at Ecto-sp13_S_contig17392:2..814-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17392.5200.1 ID=mRNA_Ecto-sp13_S_contig17392.5200.1|Name=mRNA_Ecto-sp13_S_contig17392.5200.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=813bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17392:2..814- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTCCAAGAAACCAAAGTGTGGCGGAGGAGACCCGTGGGCGAAGAAGCT
CAAGAAGCCCATCACCATAGACACGGACGAAAAGCTTTTTCTCAACGAGC
TCGTCACAGACCTGGAGGTGGGTGTCACAACCACGTACGACGGCCGGAAG
ATCAGCGAAGAGGTGAACGAACAGGCGGTGGAGTACGTGCAGTCGAAACT
CGATCGTCCCGAAGAAGAGCAGTCTCTTCTCGCACTCATAGGCCAGAAAG
GTGCACTCACCACGGAGCAACGACTCGCGGTACACAAGATGATGAGGAAG
CCGGAGCTGGGAAGGCTCCTCCGTGACATCGAGGCGTCGGCGCCGGAGGG
GCTCCACAACAGAGTGGTCGATGTCCGTGTCATGCTCCGGCCGAAGGACG
CGGGCATGGTCCCCCACCGAGACAGCATCAACCTGAAGTACGATCGGACA
GTATCTACGTGGCTGGCTGGCCCCTCTCAGAAGCCCCCGTTATTCTTCGT
GAAGCTCATGTCAAGACCAGACGCCACGCCTGCGCGCGGCCCTTACGAGC
CCGGCGAGATTGTCGTCCCCAAGGTCAACGGGCGGATTGTAGTGAAGGGG
CCGAACGCCCGGGGAGAGGAGGTACGAGTGGTCCATGGCGTCGGGCCCGG
GGACGTGACATCCCTCACTCTCGTGGCGGACTACATTACAACCCGGAAGG
ATGGGCAACCTACCTCGGACGAGGACCGCCACAGTGCTCGCAAGTCGGGG
GTCGCCCACACCACCAGGGCGCCTCCGCCTGGAGCAACCGTCAACCCCTA
CGCCGATGGGCTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17392:2..814-

>mRNA_Ecto-sp13_S_contig17392.5200.1 ID=mRNA_Ecto-sp13_S_contig17392.5200.1|Name=mRNA_Ecto-sp13_S_contig17392.5200.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=450bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17392:2..814- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTCCAAGAAACCAAAGTGTGGCGGAGGAGACCCGTGGGCGAAGAAGCT
CAAGAAGCCCATCACCATAGACACGGACGAAAAGCTTTTTCTCAACGAGC
TCGTCACAGACCTGGAGAAGCCCCCGTTATTCTTCGTGAAGCTCATGTCA
AGACCAGACGCCACGCCTGCGCGCGGCCCTTACGAGCCCGGCGAGATTGT
CGTCCCCAAGGTCAACGGGCGGATTGTAGTGAAGGGGCCGAACGCCCGGG
GAGAGGAGGTACGAGTGGTCCATGGCGTCGGGCCCGGGGACGTGACATCC
CTCACTCTCGTGGCGGACTACATTACAACCCGGAAGGATGGGCAACCTAC
CTCGGACGAGGACCGCCACAGTGCTCGCAAGTCGGGGGTCGCCCACACCA
CCAGGGCGCCTCCGCCTGGAGCAACCGTCAACCCCTACGCCGATGGGCTT
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