mRNA_Ecto-sp13_S_contig17375.5190.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17375.5190.1
Unique NamemRNA_Ecto-sp13_S_contig17375.5190.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17375.5190.1 vs. uniprot
Match: A0A6H5J6V2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6V2_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 3.630e-19
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:    1 RARELSLDNTRDSPFALLAKENDIMWGGGMPDDITVVALRVI 126
            RARELSLDNTRDSPFALLAKENDIMWGGGMPDDITVVALRVI
Sbjct:  714 RARELSLDNTRDSPFALLAKENDIMWGGGMPDDITVVALRVI 755
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BLAST of mRNA_Ecto-sp13_S_contig17375.5190.1 vs. uniprot
Match: A0A836CA81_9STRA (Protein phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA81_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 6.880e-17
Identity = 35/42 (83.33%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 RARELSLDNTRDSPFALLAKENDIMWGGGMPDDITVVALRVI 126
            RARELSLD +RDSPFALLAKENDIMWGGGMPDD+TVV +R++
Sbjct:  255 RARELSLDTSRDSPFALLAKENDIMWGGGMPDDVTVVVMRIV 296
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BLAST of mRNA_Ecto-sp13_S_contig17375.5190.1 vs. uniprot
Match: D8LCX2_ECTSI (Protein phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCX2_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 9.870e-17
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 RARELSLDNTRDSPFALLAKENDIMWGGGMPDDITVVALRVI 126
            RARELSLDNTRDSPFALLAKENDIMWGGGMP  ITVVALRVI
Sbjct:  469 RARELSLDNTRDSPFALLAKENDIMWGGGMPYYITVVALRVI 510
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BLAST of mRNA_Ecto-sp13_S_contig17375.5190.1 vs. uniprot
Match: A0A7S3XSW7_HETAK (Protein phosphatase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSW7_HETAK)

HSP 1 Score: 74.7 bits (182), Expect = 1.160e-15
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    1 RARELSLDNTRDSPFALLAKENDIMWGGGMPDDITVVALRVI 126
            RARELSLD+  DSPFA+LAKENDIMWGGGMPDD TV+A+RV+
Sbjct:  126 RARELSLDDYIDSPFAVLAKENDIMWGGGMPDDCTVLAIRVV 167
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BLAST of mRNA_Ecto-sp13_S_contig17375.5190.1 vs. uniprot
Match: W7THC9_9STRA (Protein phosphatase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7THC9_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.250e-15
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:    1 RARELSLDNTRDSPFALLAKENDIMWGGGMPDDITVVALRVI 126
            RARELSLD  RDSPFA+LAKENDIMWGGGMPDD T+ A+RV+
Sbjct:  608 RARELSLDQKRDSPFAILAKENDIMWGGGMPDDCTIFAMRVV 649
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BLAST of mRNA_Ecto-sp13_S_contig17375.5190.1 vs. uniprot
Match: A0A7S2FQD2_9STRA (Protein phosphatase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FQD2_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 8.350e-15
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 RARELSLDNTRDSPFALLAKENDIMWGGGMPDDITVVALRV 123
            RARELS+D   DSPFA+LAKENDIMWGGGMPDD TVVALRV
Sbjct:  313 RARELSVDKHTDSPFAILAKENDIMWGGGMPDDCTVVALRV 353
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BLAST of mRNA_Ecto-sp13_S_contig17375.5190.1 vs. uniprot
Match: A0A7S2WRH3_9STRA (Protein phosphatase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WRH3_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.460e-14
Identity = 32/42 (76.19%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    1 RARELSLDNTRDSPFALLAKENDIMWGGGMPDDITVVALRVI 126
            R+RE SLDN+RDSPFA+LAK+NDI+W GGMPDD TV+ALRV+
Sbjct:  593 RSREFSLDNSRDSPFAILAKDNDILWSGGMPDDCTVLALRVV 634
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BLAST of mRNA_Ecto-sp13_S_contig17375.5190.1 vs. uniprot
Match: A0A3R6WMB4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6WMB4_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.600e-14
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 RARELSLDNTRDSPFALLAKENDIMWGGGMPDDITVVALRVI 126
            RA +LSLD T DSPFA LAKEND MWGGGMPDDIT++  RV+
Sbjct:   40 RAYDLSLDRTIDSPFARLAKENDKMWGGGMPDDITIIVARVV 81
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BLAST of mRNA_Ecto-sp13_S_contig17375.5190.1 vs. uniprot
Match: A0A7S2I067_9STRA (Protein phosphatase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I067_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 4.270e-14
Identity = 30/42 (71.43%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 RARELSLDNTRDSPFALLAKENDIMWGGGMPDDITVVALRVI 126
            +ARE SLDNT DSPFA+LAKENDIMW GGMPDD TV+ + ++
Sbjct:  115 KARENSLDNTVDSPFAILAKENDIMWSGGMPDDCTVIVMHIV 156
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BLAST of mRNA_Ecto-sp13_S_contig17375.5190.1 vs. uniprot
Match: A0A421GDJ7_9STRA (Protein phosphatase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GDJ7_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 5.030e-14
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 RARELSLDNTRDSPFALLAKENDIMWGGGMPDDITVVALRV 123
            +A +LSLD TRDSPFA LAKEND+MWGGGMPDDIT++A RV
Sbjct:  411 KAYDLSLDQTRDSPFARLAKENDLMWGGGMPDDITIIAARV 451
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17375.5190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J6V2_9PHAE3.630e-19100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CA81_9STRA6.880e-1783.33Protein phosphatase n=1 Tax=Tribonema minus TaxID=... [more]
D8LCX2_ECTSI9.870e-1795.24Protein phosphatase n=1 Tax=Ectocarpus siliculosus... [more]
A0A7S3XSW7_HETAK1.160e-1580.95Protein phosphatase n=1 Tax=Heterosigma akashiwo T... [more]
W7THC9_9STRA2.250e-1580.95Protein phosphatase n=2 Tax=Monodopsidaceae TaxID=... [more]
A0A7S2FQD2_9STRA8.350e-1585.37Protein phosphatase n=1 Tax=Florenciella parvula T... [more]
A0A7S2WRH3_9STRA1.460e-1476.19Protein phosphatase n=1 Tax=Rhizochromulina marina... [more]
A0A3R6WMB4_9STRA2.600e-1473.81Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A7S2I067_9STRA4.270e-1471.43Protein phosphatase n=1 Tax=Helicotheca tamesis Ta... [more]
A0A421GDJ7_9STRA5.030e-1478.05Protein phosphatase n=3 Tax=Phytophthora kernoviae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17375contigEcto-sp13_S_contig17375:387..512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score80.5
Seed ortholog evalue2.1e-13
Seed eggNOG ortholog2880.D8LCX2
Preferred namePPTC7
Model size126
KEGG koko:K17508
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564
Exons1
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGsCOG0631@1,KOG1379@2759
EC3.1.3.16
Cds size126
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462906.4191053-CDS-Ecto-sp13_S_contig17375:386..5121681462906.4191053-CDS-Ecto-sp13_S_contig17375:386..512Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17375 387..512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17375.5190.1prot_Ecto-sp13_S_contig17375.5190.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17375 387..512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17375.5190.1

>prot_Ecto-sp13_S_contig17375.5190.1 ID=prot_Ecto-sp13_S_contig17375.5190.1|Name=mRNA_Ecto-sp13_S_contig17375.5190.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=42bp
RARELSLDNTRDSPFALLAKENDIMWGGGMPDDITVVALRVI
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mRNA from alignment at Ecto-sp13_S_contig17375:387..512+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17375.5190.1 ID=mRNA_Ecto-sp13_S_contig17375.5190.1|Name=mRNA_Ecto-sp13_S_contig17375.5190.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17375:387..512+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGCGCGGGAGCTGTCACTGGACAATACGAGGGACTCTCCGTTCGCCCT
TCTTGCCAAGGAGAACGACATCATGTGGGGGGGAGGCATGCCGGACGACA
TCACCGTCGTAGCGCTTAGGGTCATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17375:387..512+

>mRNA_Ecto-sp13_S_contig17375.5190.1 ID=mRNA_Ecto-sp13_S_contig17375.5190.1|Name=mRNA_Ecto-sp13_S_contig17375.5190.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17375:387..512+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGCGCGGGAGCTGTCACTGGACAATACGAGGGACTCTCCGTTCGCCCT
TCTTGCCAAGGAGAACGACATCATGTGGGGGGGAGGCATGCCGGACGACA
TCACCGTCGTAGCGCTTAGGGTCATC
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