mRNA_Ecto-sp13_S_contig17361.5185.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17361.5185.1
Unique NamemRNA_Ecto-sp13_S_contig17361.5185.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17361.5185.1 vs. uniprot
Match: A0A6H5JG23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG23_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 9.180e-70
Identity = 176/207 (85.02%), Postives = 178/207 (85.99%), Query Frame = 1 
Query:  115 MRLHLPLLFLLEF----TGSASGLKISPPS---------THTSCTPLKATAGRGGSKVPRKERTSAPDGSKDTREAWRWGGFVRPKVYLASKQSKNKXXXXXXXXXXXXXXGDIGTAGSDIGTAMAIASQTTEVVVATIASTGAANALLTPLHRWSSSRKRVAEAVEAAXXXXXXXXXXXXXXXXXXXXXDGTITTNPWVAHLRAAL 696
            MRLH+ LLFLLEF    TGSASGLKISPP          THTSCTPLKATAGRGGSKVPRKERTSAPDGSKDTREAWRWGGFVRPKVY ASKQ+KN XXXXXXXXXXXXX  DIGTAGSD GTAMAI SQTTEVVVATIASTGAANALLTPLHRWSSSRKRVAEAVEA XXXXXXXXXXXXXXXXXXXXX     TNPWVAHLR  L
Sbjct:    1 MRLHVLLLFLLEFMLEFTGSASGLKISPPRFTAVTTSGRTHTSCTPLKATAGRGGSKVPRKERTSAPDGSKDTREAWRWGGFVRPKVYPASKQNKNXXXXXXXXXXXXXX--DIGTAGSDTGTAMAIVSQTTEVVVATIASTGAANALLTPLHRWSSSRKRVAEAVEAXXXXXXXXXXXXXXXXXXXXXXXXXXXTNPWVAHLRVVL 205
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BLAST of mRNA_Ecto-sp13_S_contig17361.5185.1 vs. uniprot
Match: D7FH24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH24_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 2.890e-14
Identity = 74/84 (88.10%), Postives = 74/84 (88.10%), Query Frame = 1 
Query:  448 MAIASQTTEVVVATIASTGAANALLTPLHRWSSSRKRVAEAVEAAXXXXXXXXXXXXXXXXXXXXXDGTITT-NPWVAHLRAAL 696
            MAI SQTTEVVVATIASTGAANALLTPLHRWSSSRKRVAEAVEA XXXXXXXXXXXXXXXXXXXXX       NPWVA LRAAL
Sbjct:    1 MAIVSQTTEVVVATIASTGAANALLTPLHRWSSSRKRVAEAVEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPWVALLRAAL 84
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17361.5185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JG23_9PHAE9.180e-7085.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH24_ECTSI2.890e-1488.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17361contigEcto-sp13_S_contig17361:2129..2824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size698
Hectar predicted targeting categorychloroplast
Exons1
Cds size582
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462906.0405772-UTR-Ecto-sp13_S_contig17361:2128..22421681462906.0405772-UTR-Ecto-sp13_S_contig17361:2128..2242Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17361 2129..2242 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462906.051022-CDS-Ecto-sp13_S_contig17361:2242..28241681462906.051022-CDS-Ecto-sp13_S_contig17361:2242..2824Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17361 2243..2824 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17361.5185.1prot_Ecto-sp13_S_contig17361.5185.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17361 2243..2824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17361.5185.1

>prot_Ecto-sp13_S_contig17361.5185.1 ID=prot_Ecto-sp13_S_contig17361.5185.1|Name=mRNA_Ecto-sp13_S_contig17361.5185.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=194bp
MRLHLPLLFLLEFTGSASGLKISPPSTHTSCTPLKATAGRGGSKVPRKER
TSAPDGSKDTREAWRWGGFVRPKVYLASKQSKNKSSSSDAGNNNKNGNGD
IGTAGSDIGTAMAIASQTTEVVVATIASTGAANALLTPLHRWSSSRKRVA
EAVEAAAAVKRLRQQQQRALFEQQQQEDGTITTNPWVAHLRAAL
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mRNA from alignment at Ecto-sp13_S_contig17361:2129..2824+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17361.5185.1 ID=mRNA_Ecto-sp13_S_contig17361.5185.1|Name=mRNA_Ecto-sp13_S_contig17361.5185.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=696bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17361:2129..2824+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACTGCACTGCCCGACAGACACGCGATGCGCCGGATGTGCAATGCCTGGAA
ACCTCTTTGTTGATGGGTATCGAAGGAGTGGATCTCTCGCCAGCCGTGCC
GCATTCTCGCCATCATGCGGCTCCATCTTCCGCTTCTCTTCCTGCTTGAG
TTTACAGGCAGTGCAAGCGGTTTGAAAATCTCACCCCCGTCAACACACAC
ATCATGCACGCCGCTGAAGGCAACAGCGGGCCGTGGTGGTAGCAAGGTTC
CGCGAAAAGAGCGTACCAGCGCTCCTGACGGGAGCAAGGACACCAGGGAG
GCTTGGAGGTGGGGCGGCTTCGTCCGTCCCAAGGTGTATCTTGCTTCCAA
ACAGAGCAAGAACAAGTCATCAAGCAGCGACGCCGGGAACAACAACAAGA
ACGGCAACGGCGATATTGGCACCGCCGGCAGCGACATCGGCACCGCCATG
GCCATCGCGTCGCAGACCACCGAGGTTGTGGTAGCCACGATCGCCAGCAC
TGGCGCGGCGAACGCCCTCCTCACGCCGCTGCACAGGTGGTCCTCCTCGA
GGAAGCGCGTCGCGGAGGCGGTGGAAGCGGCAGCGGCGGTAAAGAGACTC
AGACAGCAACAGCAGCGGGCACTCTTCGAGCAACAACAGCAAGAGGACGG
CACCATAACAACTAACCCCTGGGTAGCACACCTCAGGGCCGCGCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17361:2129..2824+

>mRNA_Ecto-sp13_S_contig17361.5185.1 ID=mRNA_Ecto-sp13_S_contig17361.5185.1|Name=mRNA_Ecto-sp13_S_contig17361.5185.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=582bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17361:2129..2824+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGCTCCATCTTCCGCTTCTCTTCCTGCTTGAGTTTACAGGCAGTGC
AAGCGGTTTGAAAATCTCACCCCCGTCAACACACACATCATGCACGCCGC
TGAAGGCAACAGCGGGCCGTGGTGGTAGCAAGGTTCCGCGAAAAGAGCGT
ACCAGCGCTCCTGACGGGAGCAAGGACACCAGGGAGGCTTGGAGGTGGGG
CGGCTTCGTCCGTCCCAAGGTGTATCTTGCTTCCAAACAGAGCAAGAACA
AGTCATCAAGCAGCGACGCCGGGAACAACAACAAGAACGGCAACGGCGAT
ATTGGCACCGCCGGCAGCGACATCGGCACCGCCATGGCCATCGCGTCGCA
GACCACCGAGGTTGTGGTAGCCACGATCGCCAGCACTGGCGCGGCGAACG
CCCTCCTCACGCCGCTGCACAGGTGGTCCTCCTCGAGGAAGCGCGTCGCG
GAGGCGGTGGAAGCGGCAGCGGCGGTAAAGAGACTCAGACAGCAACAGCA
GCGGGCACTCTTCGAGCAACAACAGCAAGAGGACGGCACCATAACAACTA
ACCCCTGGGTAGCACACCTCAGGGCCGCGCTG
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