mRNA_Ecto-sp13_S_contig1734.5178.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1734.5178.1
Unique NamemRNA_Ecto-sp13_S_contig1734.5178.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1734.5178.1 vs. uniprot
Match: D8LBS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS6_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 4.610e-67
Identity = 128/164 (78.05%), Postives = 142/164 (86.59%), Query Frame = 3 
Query:  264 RLDDHFVPNARGG*ESLRWVDNFEQKRTVMRQMDDILEGGDFIFNPALGAIWKKFRHYPSTMNGSGEWNTGFATPTVKLHVLTCRERLANTNGLMVQENHEYVDAAXXXXXXXXXXXXXXXXXXXXXXXXXXQMRRGFKLPPFTNDCHTVQAHPQRDFLHGARG 755
            RL+DH  PNARG  +SLRWVDN EQKRTV+RQ D IL  GDF+FNPALG IW +FRH PSTMNGSGEWNTGFATP++KLHVL  RERLANT+GL+V++NHEY DAAXXXXXXXXXXXXXXXXXXXXXXX   +MRRGFKLPPFTND HTVQA P+RD+LH  RG
Sbjct:   89 RLNDHIDPNARGSYDSLRWVDNLEQKRTVLRQTDGILGEGDFVFNPALGGIWMRFRHCPSTMNGSGEWNTGFATPSIKLHVLMFRERLANTDGLVVEQNHEYADAAXXXXXXXXXXXXXXXXXXXXXXX---KMRRGFKLPPFTNDWHTVQARPERDYLHCVRG 249
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BLAST of mRNA_Ecto-sp13_S_contig1734.5178.1 vs. uniprot
Match: A0A6H5JFX2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFX2_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 4.630e-51
Identity = 84/107 (78.50%), Postives = 90/107 (84.11%), Query Frame = 3 
Query:  261 TRLDDHFVPNARGG*ESLRWVDNFEQKRTVMRQMDDILEGGDFIFNPALGAIWKKFRHYPSTMNGSGEWNTGFATPTVKLHVLTCRERLANTNGLMVQENHEYVDAA 581
            T++D   V  A G  +SLRWVDN EQKR V+RQMDDILEGGDFIFNPALG IW KFRH PSTM GSGEWNTGFATPT+KLHVL CRERLANT GL+VQENHEY DAA
Sbjct:   74 TKMDLSLV--AGGMLDSLRWVDNLEQKRDVLRQMDDILEGGDFIFNPALGGIWMKFRHCPSTMIGSGEWNTGFATPTIKLHVLMCRERLANTGGLVVQENHEYADAA 178
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BLAST of mRNA_Ecto-sp13_S_contig1734.5178.1 vs. uniprot
Match: D7FWI3_ECTSI (Global transcription factor group n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWI3_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 2.440e-26
Identity = 60/122 (49.18%), Postives = 75/122 (61.48%), Query Frame = 3 
Query:  216 GRCWVEPHHEARAPPTRLDDHFVPNARGG*ESLRWVDNFEQKRTVMRQMDDILEGGDFIFNPALGAIWKKFRHYPSTMNGSGEWNTGFATPTVKLHVLTCRERLANTNGLMVQENHEYVDAA 581
            G   V      R    +LD H   +ARGG E LRWVDN  QKRTV+RQ+  ILE  +F + PALG +W + RH PS  +GSG WNTG ATPT++  VL  R  LA+  GL V+E+  Y +AA
Sbjct: 2158 GAVGVNSMRRLRGQLQKLDGHIDEHARGGDEGLRWVDNLNQKRTVLRQVGAILED-EFRYLPALGGLWMRVRHLPSAKSGSGVWNTGSATPTIEFRVLMRRALLADEGGLTVEEDSGYAEAA 2278
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BLAST of mRNA_Ecto-sp13_S_contig1734.5178.1 vs. uniprot
Match: A0A6H5KNI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI2_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 3.590e-19
Identity = 44/86 (51.16%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:    7 SDPRLVKMWWDGGLVMISAIVEDAAGVTGLPGITFTHGPWKLTIEALKTNIDITAPADANDQDGFVAVCGGDVGLNRIMKLGHHLR 264
            SDPRLVKM WDGGLVM++A+++DA G   +P I  T  P  +TIEAL   + I AP +A + DGF A CGG VG+N + +L  H++
Sbjct: 2814 SDPRLVKMRWDGGLVMVTAVIKDAVGGKAIPHIDLTQSPSGMTIEALGVKVRIAAPPEAKNMDGFSAACGGAVGVNSMRRLRGHVQ 2899
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1734.5178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LBS6_ECTSI4.610e-6778.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFX2_9PHAE4.630e-5178.50Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FWI3_ECTSI2.440e-2649.18Global transcription factor group n=1 Tax=Ectocarp... [more]
A0A6H5KNI2_9PHAE3.590e-1951.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1734contigEcto-sp13_S_contig1734:13436..14190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size755
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_002860.1
Cds size450
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462905.4342349-UTR-Ecto-sp13_S_contig1734:13435..137401681462905.4342349-UTR-Ecto-sp13_S_contig1734:13435..13740Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1734 13436..13740 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462905.4434493-CDS-Ecto-sp13_S_contig1734:13740..141901681462905.4434493-CDS-Ecto-sp13_S_contig1734:13740..14190Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1734 13741..14190 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1734.5178.1prot_Ecto-sp13_S_contig1734.5178.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1734 13741..14190 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1734.5178.1

>prot_Ecto-sp13_S_contig1734.5178.1 ID=prot_Ecto-sp13_S_contig1734.5178.1|Name=mRNA_Ecto-sp13_S_contig1734.5178.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=150bp
MRSDPRLVKMWWDGGLVMISAIVEDAAGVTGLPGITFTHGPWKLTIEALK
TNIDITAPADANDQDGFVAVCGGDVGLNRIMKLGHHLRGWTTISFRMLGV
ARRVFGGSTTSNRSALSCARWTTSSRGATSSSILPWGLSGRNSATTRPR*
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mRNA from alignment at Ecto-sp13_S_contig1734:13436..14190-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1734.5178.1 ID=mRNA_Ecto-sp13_S_contig1734.5178.1|Name=mRNA_Ecto-sp13_S_contig1734.5178.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=755bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1734:13436..14190- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTAGCGACCCGCGCCTGGTCAAGATGTGGTGGGACGGTGGCCTCGT
GATGATATCGGCTATCGTCGAGGATGCGGCGGGGGTGACAGGGCTTCCGG
GGATCACCTTCACCCATGGACCCTGGAAGCTCACCATCGAGGCGTTGAAA
ACTAACATTGACATCACAGCTCCAGCGGATGCGAACGACCAAGATGGATT
TGTCGCTGTTTGCGGGGGAGATGTTGGGTTGAACCGCATCATGAAGCTCG
GGCACCACCTACGAGGCTGGACGACCATTTCGTTCCGAATGCTAGGGGTG
GCTAGGAGAGTCTTCGGTGGGTCGACAACTTCGAACAGAAGCGCACTGTC
ATGCGCCAGATGGACGACATCCTCGAGGGGGGCGACTTCATCTTCAATCC
TGCCTTGGGGGCTATCTGGAAGAAATTCCGCCACTACCCGTCCACGATGA
ACGGCTCCGGCGAGTGGAACACGGGATTCGCTACGCCCACCGTCAAGTTG
CACGTGCTGACGTGTCGTGAGCGTCTCGCCAACACGAACGGACTGATGGT
TCAAGAGAACCACGAGTACGTCGACGCGGCTGCGGCTGCTACGGCTGGAG
CGGCGGCTGAAGAGAGCGAGGAGGAGAAGGAGGAGGAGGACGAGGACGAG
GAAGAGGAGCAGATGAGGAGGGGGTTCAAACTACCCCCGTTTACCAATGA
CTGCCACACAGTACAAGCGCACCCTCAACGAGACTTTCTACATGGCGCGC
GAGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1734:13436..14190-

>mRNA_Ecto-sp13_S_contig1734.5178.1 ID=mRNA_Ecto-sp13_S_contig1734.5178.1|Name=mRNA_Ecto-sp13_S_contig1734.5178.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=450bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1734:13436..14190- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTAGCGACCCGCGCCTGGTCAAGATGTGGTGGGACGGTGGCCTCGT
GATGATATCGGCTATCGTCGAGGATGCGGCGGGGGTGACAGGGCTTCCGG
GGATCACCTTCACCCATGGACCCTGGAAGCTCACCATCGAGGCGTTGAAA
ACTAACATTGACATCACAGCTCCAGCGGATGCGAACGACCAAGATGGATT
TGTCGCTGTTTGCGGGGGAGATGTTGGGTTGAACCGCATCATGAAGCTCG
GGCACCACCTACGAGGCTGGACGACCATTTCGTTCCGAATGCTAGGGGTG
GCTAGGAGAGTCTTCGGTGGGTCGACAACTTCGAACAGAAGCGCACTGTC
ATGCGCCAGATGGACGACATCCTCGAGGGGGGCGACTTCATCTTCAATCC
TGCCTTGGGGGCTATCTGGAAGAAATTCCGCCACTACCCGTCCACGATGA
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