mRNA_Ecto-sp13_S_contig17333.5176.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17333.5176.1
Unique NamemRNA_Ecto-sp13_S_contig17333.5176.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17333.5176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17333contigEcto-sp13_S_contig17333:802..1306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size187
Hectar predicted targeting categoryother localisation
Exons2
Cds size186
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462905.3249924-CDS-Ecto-sp13_S_contig17333:801..8801681462905.3249924-CDS-Ecto-sp13_S_contig17333:801..880Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17333 802..880 -
1681462905.3348045-CDS-Ecto-sp13_S_contig17333:1199..13061681462905.3348045-CDS-Ecto-sp13_S_contig17333:1199..1306Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17333 1200..1306 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17333.5176.1prot_Ecto-sp13_S_contig17333.5176.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17333 802..1306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17333.5176.1

>prot_Ecto-sp13_S_contig17333.5176.1 ID=prot_Ecto-sp13_S_contig17333.5176.1|Name=mRNA_Ecto-sp13_S_contig17333.5176.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp
NAEGSGNNHTTRSAWPLLTSCSSHAPGPRATTSYGGMLGASRTARAIQSA
GVYSLHTGGKAE
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mRNA from alignment at Ecto-sp13_S_contig17333:802..1306-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17333.5176.1 ID=mRNA_Ecto-sp13_S_contig17333.5176.1|Name=mRNA_Ecto-sp13_S_contig17333.5176.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=505bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17333:802..1306- (Ectocarpus species13 EcNAP12_S_4_19m)
AACGCAGAAGGGAGTGGGAACAATCACACCACGAGATCGGCGTGGCCCCT
CCTCACCTCATGCTCTTCCCACGCCCCTGGCCCGCGGGCAACAACTTCTT
ATGGCGGGTAACAAATTGAGACCGAGGGCGGGATATTTTTCTAATTCTTG
GGTTGTGTTCCTGGTTTCTGGTAAATATGCTAGGCACATGAAAATCAAAG
AGCAACAAGATTGGAACACGGGGCGCAAACGGCGGAAAAGCAAATGGGTG
TGGGAACAAATCACACCACGACACGGGTGTGGCCCCTCCTCACCTCATCC
TCGAAATGCGGTAGAAACTTTCACACCCTCCCCAACTTTTGAGTCGATTT
TTGCTTCTGATGTGCCTCTCCCGCTCCTTGGCCGCTTTCCTCTTCTCCTT
TTGGGCCTGCGACGGTGCTCTTGCAGCATGCTGGGAGCAAGTAGAACTGC
TCGGGCCATTCAAAGCGCCGGGGTATACTCTTTGCACACGGGGGGGAAGG
CAGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17333:802..1306-

>mRNA_Ecto-sp13_S_contig17333.5176.1 ID=mRNA_Ecto-sp13_S_contig17333.5176.1|Name=mRNA_Ecto-sp13_S_contig17333.5176.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17333:802..1306- (Ectocarpus species13 EcNAP12_S_4_19m)
AACGCAGAAGGGAGTGGGAACAATCACACCACGAGATCGGCGTGGCCCCT
CCTCACCTCATGCTCTTCCCACGCCCCTGGCCCGCGGGCAACAACTTCTT
ATGGCGGCATGCTGGGAGCAAGTAGAACTGCTCGGGCCATTCAAAGCGCC
GGGGTATACTCTTTGCACACGGGGGGGAAGGCAGAG
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