mRNA_Ecto-sp13_S_contig17331.5175.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17331.5175.1
Unique NamemRNA_Ecto-sp13_S_contig17331.5175.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17331.5175.1 vs. uniprot
Match: A0A6H5KCU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU2_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 9.180e-75
Identity = 151/171 (88.30%), Postives = 159/171 (92.98%), Query Frame = 1 
Query:  112 MPRQTRQASSPATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEKAPADRELQYLCPRTGCTTNLSLKENIRKDRADYPACRNLSAGTCAWTGLLIKYPGKVSWLCASEFDVGEMVWAYTIPDVERVACYIKWCLNAEACIVLKEDGVPVNVRLAGEDDVS 624
            MPRQ+RQASSPAT  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PE+ PADRELQYLCPRTGC TNL LKENIRKDRADYPACRN +AGTCAWTGLLIKYPGKV WLCASEF+VGE+VWA+TIPDVER AC+I WCLNAEACIVLK DGVPVNVRLAGEDD +
Sbjct:    1 MPRQSRQASSPATKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPEQVPADRELQYLCPRTGCNTNLFLKENIRKDRADYPACRNFNAGTCAWTGLLIKYPGKVCWLCASEFEVGEVVWAHTIPDVERPACHINWCLNAEACIVLKGDGVPVNVRLAGEDDAN 171
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BLAST of mRNA_Ecto-sp13_S_contig17331.5175.1 vs. uniprot
Match: D8LKW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW7_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 4.270e-59
Identity = 89/120 (74.17%), Postives = 96/120 (80.00%), Query Frame = 1 
Query:  274 KAPADRELQYLCPRTGCTTNLSLKENIRKDRADYPACRNLSAGTCAWTGLLIKYPGKVSWLCASEFDVGEMVWAYTIPDVERVACYIKWCLNAEACIVLKEDGVPVNVRLAGEDDVSLYF 633
            +A ADRE QYLCP TGC TNL       KDRADYPACR  S GTC WTGLLIKYPG V WLCASEF+VGE+VWAYTIPDVER ACYI WCLN +A I+LKE+GVPVN RLAGEDDV + F
Sbjct:   99 RAKADREPQYLCPGTGCNTNL------HKDRADYPACRTFSVGTCVWTGLLIKYPGNVCWLCASEFEVGEVVWAYTIPDVERPACYITWCLNGDAGIILKEEGVPVNARLAGEDDVLVQF 212
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BLAST of mRNA_Ecto-sp13_S_contig17331.5175.1 vs. uniprot
Match: D8LET1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LET1_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 7.490e-55
Identity = 90/121 (74.38%), Postives = 98/121 (80.99%), Query Frame = 1 
Query:  268 PEKAPADRELQYLCPRTGCTTNLSLKENIRKDRADYPACRNLSAGTCAWTG--LLIKYPGKVSWLCASEFDVGEMVWAYTIPDVERVACYIKWCLNAEACIVLKEDGVPVNVRLAGEDDVS 624
            PE+ PADRELQ+LCP TGC TNL LKENI KDRADY  C    AGT A     LLIKYPGKV WLCASEF+VGE+VWAYT PDVER ACYI WCLN +ACI+LKE+G PVNVRLAGEDDV+
Sbjct:   55 PEQVPADRELQHLCPGTGCNTNLFLKENIHKDRADY--CTT-PAGTLAPVPARLLIKYPGKVCWLCASEFEVGEVVWAYTTPDVERPACYINWCLNEDACIILKEEGAPVNVRLAGEDDVA 172
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BLAST of mRNA_Ecto-sp13_S_contig17331.5175.1 vs. uniprot
Match: D7FWQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ2_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.340e-12
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:  271 EKAPADRELQYLCPRTGCTTNLSLKENIRKDRADYPACRNLS 396
            E+ PADRE QYLCP TGC TNL LKENI K RADYPACR L+
Sbjct:   86 EQVPADRESQYLCPGTGCNTNLFLKENIHKGRADYPACRTLA 127
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17331.5175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KCU2_9PHAE9.180e-7588.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKW7_ECTSI4.270e-5974.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LET1_ECTSI7.490e-5574.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWQ2_ECTSI1.340e-1276.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17331contigEcto-sp13_S_contig17331:1053..2220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size633
Hectar predicted targeting categoryother localisation
Exons2
Cds size633
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462905.2907228-CDS-Ecto-sp13_S_contig17331:1052..11771681462905.2907228-CDS-Ecto-sp13_S_contig17331:1052..1177Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17331 1053..1177 -
1681462905.3004446-CDS-Ecto-sp13_S_contig17331:1712..22201681462905.3004446-CDS-Ecto-sp13_S_contig17331:1712..2220Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17331 1713..2220 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17331.5175.1prot_Ecto-sp13_S_contig17331.5175.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17331 1053..2220 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17331.5175.1

>prot_Ecto-sp13_S_contig17331.5175.1 ID=prot_Ecto-sp13_S_contig17331.5175.1|Name=mRNA_Ecto-sp13_S_contig17331.5175.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=211bp
MRSDDGSPPIYSLYTPSHHKSQLTPPEQLSSDKHHTSMPRQTRQASSPAT
NPSSSTAGSSTPAASTAAPTPSPARSAGSSASAGSSIGSPEKAPADRELQ
YLCPRTGCTTNLSLKENIRKDRADYPACRNLSAGTCAWTGLLIKYPGKVS
WLCASEFDVGEMVWAYTIPDVERVACYIKWCLNAEACIVLKEDGVPVNVR
LAGEDDVSLYF
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mRNA from alignment at Ecto-sp13_S_contig17331:1053..2220-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17331.5175.1 ID=mRNA_Ecto-sp13_S_contig17331.5175.1|Name=mRNA_Ecto-sp13_S_contig17331.5175.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17331:1053..2220- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCTCTGACGATGGATCTCCTCCCATCTACTCCCTCTACACCCCCTC
TCATCACAAATCACAGCTCACACCGCCAGAGCAGCTTTCATCCGATAAAC
ACCATACATCCATGCCTCGCCAAACCCGCCAAGCCTCCAGCCCCGCTACC
AACCCATCGTCCTCCACCGCTGGATCCTCTACGCCGGCTGCTTCTACGGC
TGCTCCTACCCCGTCGCCCGCGCGCAGTGCCGGCTCATCTGCGAGTGCTG
GCTCATCTATCGGCTCGCCCGAGAAAGCCCCGGCCGACCGCGAGCTGCAA
TACCTCTGCCCACGCACCGGTTGCACCACCAACCTCTCCTTAAAGGAAAA
TATCCGCAAAGACAGGGCCGACTACCCCGCTTGCAGGAACTTGAGCGCCG
GCACCTGCGCGTGGACCGGCCTGTTGATCAAGTACCCCGGAAAGGTCTCC
TGGCTCTGCGCCTCCGAGTTCGATGTCGGCGAAATGGTGTGGGCATACAC
CATCCCAGGTGAGAGCTTTCGTATATCTACAGCAGTAGTATAATAATGAA
TGATCTTCCTTCACGGATGTAATCTGTAGCGGCAGGCTTGGAGTTCGCGC
GTTGATACTCGTGGTTGTTTGTACGTATGAACGCGATTCATATTTTTTGC
CGACGCACATCACGTTCATACAAAATTGTTTACACCACACAACATTCGGC
GCTCTCATCATTTTTCGACGCTCTTCGTGACGGGGTATGAATCATATGCC
CACGTTGTAGAAACTAACACGATTCATTCCTGATTTCTGTCACAAGAAAA
CCACACAAGAACCACCAAGCAACCTTGCAATTTTTTTCGGGCTGAGCTGT
GTAGGGTTGTCGCACAAACTTTGTCCCTCCCTCCGCTGTTGAATTACTCA
GGAAATGAACGGATCTATCTACTTCAACAAAACGCTGCAACAAAAAAAAA
ATTCTTCACTGACGAGTTTTCGCCTCCATGCCTGTATGTATGAATGTATG
TATGTATGTATGTATGCCACCTTCTCTTTTTGTGATCAAACAGACGTGGA
ACGCGTGGCGTGCTATATTAAGTGGTGCCTCAACGCCGAGGCCTGTATCG
TCCTCAAGGAGGACGGCGTCCCCGTCAACGTTAGGCTGGCCGGCGAGGAC
GACGTGAGCCTTTATTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17331:1053..2220-

>mRNA_Ecto-sp13_S_contig17331.5175.1 ID=mRNA_Ecto-sp13_S_contig17331.5175.1|Name=mRNA_Ecto-sp13_S_contig17331.5175.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=633bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17331:1053..2220- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCTCTGACGATGGATCTCCTCCCATCTACTCCCTCTACACCCCCTC
TCATCACAAATCACAGCTCACACCGCCAGAGCAGCTTTCATCCGATAAAC
ACCATACATCCATGCCTCGCCAAACCCGCCAAGCCTCCAGCCCCGCTACC
AACCCATCGTCCTCCACCGCTGGATCCTCTACGCCGGCTGCTTCTACGGC
TGCTCCTACCCCGTCGCCCGCGCGCAGTGCCGGCTCATCTGCGAGTGCTG
GCTCATCTATCGGCTCGCCCGAGAAAGCCCCGGCCGACCGCGAGCTGCAA
TACCTCTGCCCACGCACCGGTTGCACCACCAACCTCTCCTTAAAGGAAAA
TATCCGCAAAGACAGGGCCGACTACCCCGCTTGCAGGAACTTGAGCGCCG
GCACCTGCGCGTGGACCGGCCTGTTGATCAAGTACCCCGGAAAGGTCTCC
TGGCTCTGCGCCTCCGAGTTCGATGTCGGCGAAATGGTGTGGGCATACAC
CATCCCAGACGTGGAACGCGTGGCGTGCTATATTAAGTGGTGCCTCAACG
CCGAGGCCTGTATCGTCCTCAAGGAGGACGGCGTCCCCGTCAACGTTAGG
CTGGCCGGCGAGGACGACGTGAGCCTTTATTTC
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