mRNA_Ecto-sp13_S_contig17314.5167.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17314.5167.1
Unique NamemRNA_Ecto-sp13_S_contig17314.5167.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17314.5167.1 vs. uniprot
Match: A0A6H5JWJ6_9PHAE (BRISC and BRCA1-A complex member 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ6_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.040e-19
Identity = 63/71 (88.73%), Postives = 63/71 (88.73%), Query Frame = 2 
Query:   80 MEQQQRQSCTAELRAQLGAMSVEGTSVSAGPGEGGGTTPIQTPAGGGXXXXXXXXXXGSSGLANLNERKRV 292
            MEQQQRQ  T ELRAQLGAMSVEGTSV AGPGEGGG TPIQTPAGGG XXXXXXX  GSSGLANLNERKRV
Sbjct:    1 MEQQQRQGGTTELRAQLGAMSVEGTSVLAGPGEGGGATPIQTPAGGGAXXXXXXXSRGSSGLANLNERKRV 71
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BLAST of mRNA_Ecto-sp13_S_contig17314.5167.1 vs. uniprot
Match: D7G9C7_ECTSI (BRISC and BRCA1-A complex member 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9C7_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 3.070e-17
Identity = 56/63 (88.89%), Postives = 57/63 (90.48%), Query Frame = 2 
Query:  137 MSVEGTSVSAGPGEGGGTTPIQTPAGGGXXXXXXXXXXGSSGLANLNERKRVLVASMSPEDVV 325
            MSVEGTSVSAGPGEGGG TPIQ PAGGG  XXXXXX  GSSGLANLN+RKRVLVASMSPEDVV
Sbjct:    1 MSVEGTSVSAGPGEGGGATPIQAPAGGGATXXXXXXSRGSSGLANLNDRKRVLVASMSPEDVV 63
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17314.5167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JWJ6_9PHAE1.040e-1988.73BRISC and BRCA1-A complex member 1 n=1 Tax=Ectocar... [more]
D7G9C7_ECTSI3.070e-1788.89BRISC and BRCA1-A complex member 1 n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17314contigEcto-sp13_S_contig17314:554..2436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size698
Hectar predicted targeting categoryother localisation
Exons2
Cds size387
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462904.5881627-UTR-Ecto-sp13_S_contig17314:553..6321681462904.5881627-UTR-Ecto-sp13_S_contig17314:553..632Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17314 554..632 +
1681462904.6214418-UTR-Ecto-sp13_S_contig17314:2204..24361681462904.6214418-UTR-Ecto-sp13_S_contig17314:2204..2436Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17314 2205..2436 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462904.6020854-CDS-Ecto-sp13_S_contig17314:632..6981681462904.6020854-CDS-Ecto-sp13_S_contig17314:632..698Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17314 633..698 +
1681462904.612117-CDS-Ecto-sp13_S_contig17314:1883..22041681462904.612117-CDS-Ecto-sp13_S_contig17314:1883..2204Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17314 1884..2204 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17314.5167.1prot_Ecto-sp13_S_contig17314.5167.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17314 633..2204 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17314.5167.1

>prot_Ecto-sp13_S_contig17314.5167.1 ID=prot_Ecto-sp13_S_contig17314.5167.1|Name=mRNA_Ecto-sp13_S_contig17314.5167.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=129bp
MEQQQRQSCTAELRAQLGAMSVEGTSVSAGPGEGGGTTPIQTPAGGGATG
GVQGGSRGSSGLANLNERKRVLVASMSPEDVVNFCSLSFIFLRYVIVLDR
QSSCRIVVRAGFFIGGSGSAWENAVAGL*
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mRNA from alignment at Ecto-sp13_S_contig17314:554..2436+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17314.5167.1 ID=mRNA_Ecto-sp13_S_contig17314.5167.1|Name=mRNA_Ecto-sp13_S_contig17314.5167.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1883bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17314:554..2436+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGCCGCTACAGATAAACACTGAAGGATAAACGAAGTTTGCCGAGAAT
TGGAACGGGTTTGAGAACAAGGAGGTGGCATGGAGCAGCAGCAACGGCAA
AGCTGCACTGCCGAACTCCGTGCACAGCTTGGTGCAATGAGCGTGGTGAG
AGTTGTTGTTTGTCGAGGTCCAACACTCAGCTAGTGCACCAGCTACCTAC
ACTTGATCTTGAGTTGTGCCGCATTTTGTTCGCCAACTCCCAACAATGGT
TGACCAGTGCAGCCTATTTGTACAACCGCAGCATACGACACCAATACTAC
AGCACAGCACTTTGCTATTCATATGCATACGTACGTTATACAGATTGACC
CTCGCCGACACCTATGTGGGCCGACGGTATGTCCCACTCGCAACTCCTGG
TACGCGCCCTCTGTTCTGTTGCCGGGCGAGGTGGTAACGCGCTCTGGTAG
GTAGGTGTCTGTATCTTCAGGTACAGCAGTTTTTTTTCGCCGTTGTCTGG
ACAACGGTAGCGCGTGGATGGGGTCATTGCGCGGGACGGACTCTGTGTGC
TGTCAAAAGGCACATGTGCTCGTTGTCTGCACCATCTTGCAGCACGGTTG
GTAGCCAGCCGGCCGGGGATATGGCATACGAACCTCAGCGTGGGTGGCCC
GCTTTCGCCCATGCAGACTCGCATGATCTTCGCACCAGACAGACGCTGCG
TAGGTGCTTGTTGACGGTTGGCGGGTAGATTGTCATTAGCAATGGTTCCC
GTTGTAGCAATTTGGCGTCAAGCATTCGCCGGCGTGCGCCTTGAAGGGAG
TGCGATACTGGTTTGGAGTTTCGCCCATTTTTTATCAAAAGTGTGGAGCT
CGTCGTGAGGAAATGCGACAACAAGGAGACTTTGGCGGACGACAGCAGTT
TGTGTCTGCGCTTCAGAACCTCTAGTTTCGGCCGAGGTTGGGATTGTTTG
TTCCTAGGGTTACGAATGGCCGCTACATAATATTTAGTGCAGGAGTTCTT
AACGGAGCTCACAAATGGTGCTCAAGTTCTTGGGGATACTCTGATTTTTT
GGAAGCTCAGTTTCGACGGTTTTTCTTTAGGAATGCGTGCGTTTACGGAT
GAGGATGTGATCCTCTATCGCTCAGCGGGCGACTACAAGTATCGTACACG
AGCTCCACCGCTCTTCCTCGCTACTCCCCCCTGCAGCTCTCTCGAAGCTT
GCGCGACACCACGCCTTCACAGCTTGTACGGCATGTCCGCCACGCCCGGG
CGTGCAGAGCGCCTGCAGCCATTTTCTCCCGTATGAGGTCGCTACCCCCC
CGTTCTCGTACGTTCATTTGCTCCATTCAGGAAGGCACCAGTGTCTCGGC
AGGTCCGGGCGAGGGGGGGGGTACGACGCCGATTCAGACTCCTGCTGGGG
GCGGGGCTACCGGTGGTGTTCAGGGTGGCTCGAGAGGATCGTCGGGGCTT
GCAAATCTGAACGAGCGGAAGCGTGTGTTGGTTGCGAGCATGTCGCCGGA
GGATGTGGTGAATTTTTGTTCATTGTCGTTCATTTTTCTTCGTTATGTGA
TCGTTTTGGATCGTCAGTCATCTTGTAGAATTGTCGTCAGGGCGGGATTT
TTCATAGGGGGCAGTGGATCGGCGTGGGAGAATGCTGTAGCGGGATTATG
AGGGCTCTATTTTGTCACCTGGTGGTATGCACCCTGCCCACGGGATCACA
TGCTACAACCAAGAGTATTTTCCTCTGTTTGTTGCCCTCGGCCCGGATAT
GGTCAAAGCGCGCGGTAAGCGCTACAGCGCTGCAAATACCAGAGTCCAAA
CATCAGTCGGCATCGATTGCTTTTTACGAACAGCATCTAGACACCTAGTT
GACAACTGTGGCACCTCTATGCAAAGACGTAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17314:554..2436+

>mRNA_Ecto-sp13_S_contig17314.5167.1 ID=mRNA_Ecto-sp13_S_contig17314.5167.1|Name=mRNA_Ecto-sp13_S_contig17314.5167.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17314:554..2436+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCAGCAGCAACGGCAAAGCTGCACTGCCGAACTCCGTGCACAGCT
TGGTGCAATGAGCGTGGAAGGCACCAGTGTCTCGGCAGGTCCGGGCGAGG
GGGGGGGTACGACGCCGATTCAGACTCCTGCTGGGGGCGGGGCTACCGGT
GGTGTTCAGGGTGGCTCGAGAGGATCGTCGGGGCTTGCAAATCTGAACGA
GCGGAAGCGTGTGTTGGTTGCGAGCATGTCGCCGGAGGATGTGGTGAATT
TTTGTTCATTGTCGTTCATTTTTCTTCGTTATGTGATCGTTTTGGATCGT
CAGTCATCTTGTAGAATTGTCGTCAGGGCGGGATTTTTCATAGGGGGCAG
TGGATCGGCGTGGGAGAATGCTGTAGCGGGATTATGA
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