mRNA_Ecto-sp13_S_contig17312.5165.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17312.5165.1
Unique NamemRNA_Ecto-sp13_S_contig17312.5165.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17312.5165.1 vs. uniprot
Match: A0A6H5L2L9_9PHAE (Post-GPI attachment to proteins factor 3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L9_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 8.290e-27
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 QVNDFPPLFRLLDAHAIWHFATIPLMFHWYHFVIQDARHEVTLSTKE 141
            +VNDFPPLFRLLDAHAIWHFATIPLMFHWYHFVIQDARHEVTLS+KE
Sbjct:  141 EVNDFPPLFRLLDAHAIWHFATIPLMFHWYHFVIQDARHEVTLSSKE 187
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BLAST of mRNA_Ecto-sp13_S_contig17312.5165.1 vs. uniprot
Match: D8LDA6_ECTSI (Post-GPI attachment to proteins factor 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDA6_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 3.700e-26
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:    1 QVNDFPPLFRLLDAHAIWHFATIPLMFHWYHFVIQDARHEVTLSTKET 144
            +VNDFPPLFRLLDAHAIWHFATIPLMFHWYHFVIQDARHEVTLSTKET
Sbjct:  434 EVNDFPPLFRLLDAHAIWHFATIPLMFHWYHFVIQDARHEVTLSTKET 481
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BLAST of mRNA_Ecto-sp13_S_contig17312.5165.1 vs. uniprot
Match: C5KRB1_PERM5 (Post-GPI attachment to proteins factor 3 n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KRB1_PERM5)

HSP 1 Score: 65.9 bits (159), Expect = 2.570e-11
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 QVNDFPPLFRLLDAHAIWHFATIPLMFHWYHFVIQDARHEV 123
            ++NDFPP F LLDAHA WHF TIPL F WYHFV  D + E+
Sbjct:  346 ELNDFPPYFLLLDAHACWHFTTIPLQFVWYHFVEADLKWEM 386
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BLAST of mRNA_Ecto-sp13_S_contig17312.5165.1 vs. uniprot
Match: A0A3G2S352_9BASI (Post-GPI attachment to proteins factor 3 n=3 Tax=cellular organisms TaxID=131567 RepID=A0A3G2S352_9BASI)

HSP 1 Score: 65.1 bits (157), Expect = 4.880e-11
Identity = 26/44 (59.09%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 QVNDFPPLFRLLDAHAIWHFATIPLMFHWYHFVIQDARHEVTLS 132
            ++ DFPPLFRLLDAHA+WH AT+PL + WYH++++DA HE  ++
Sbjct:  330 ELFDFPPLFRLLDAHALWHCATVPLSWWWYHWLVEDA-HECLVT 372
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BLAST of mRNA_Ecto-sp13_S_contig17312.5165.1 vs. uniprot
Match: A0A7J6LFI9_PEROL (Post-GPI attachment to proteins factor 3 n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6LFI9_PEROL)

HSP 1 Score: 64.3 bits (155), Expect = 9.010e-11
Identity = 28/51 (54.90%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:    1 QVNDFPPLFRLLDAHAIWHFATIPLMFHWYHFVIQDA----RHEVTLSTKE 141
            ++NDFPP F +LDAHA WHF T+PL F WYHFV  D     RH V+    E
Sbjct:  346 ELNDFPPYFLVLDAHACWHFTTVPLQFVWYHFVEDDLLWEMRHRVSAKYDE 396
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BLAST of mRNA_Ecto-sp13_S_contig17312.5165.1 vs. uniprot
Match: A0A0M8MZ65_9BASI (Post-GPI attachment to proteins factor 3 n=1 Tax=Malassezia pachydermatis TaxID=77020 RepID=A0A0M8MZ65_9BASI)

HSP 1 Score: 64.3 bits (155), Expect = 9.100e-11
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 QVNDFPPLFRLLDAHAIWHFATIPLMFHWYHFVIQDARHEVT 126
            ++ DFPPLFRLLDAHA+WH  T+PL   WYH++  DAR  VT
Sbjct:  311 ELFDFPPLFRLLDAHALWHLVTVPLTMLWYHWLADDARECVT 352
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BLAST of mRNA_Ecto-sp13_S_contig17312.5165.1 vs. uniprot
Match: A0A7J6M2Z5_PEROL (Post-GPI attachment to proteins factor 3 n=3 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6M2Z5_PEROL)

HSP 1 Score: 64.3 bits (155), Expect = 9.150e-11
Identity = 28/51 (54.90%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:    1 QVNDFPPLFRLLDAHAIWHFATIPLMFHWYHFVIQDA----RHEVTLSTKE 141
            ++NDFPP F +LDAHA WHF T+PL F WYHFV  D     RH V+    E
Sbjct:  638 ELNDFPPYFLVLDAHACWHFTTVPLQFVWYHFVEDDLLWEMRHRVSAKYDE 688
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BLAST of mRNA_Ecto-sp13_S_contig17312.5165.1 vs. uniprot
Match: S2JL11_MUCC1 (Post-GPI attachment to proteins factor 3 n=4 Tax=Mucor TaxID=4830 RepID=S2JL11_MUCC1)

HSP 1 Score: 63.5 bits (153), Expect = 1.430e-10
Identity = 23/45 (51.11%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 QVNDFPPLFRLLDAHAIWHFATIPLMFHWYHFVIQDARHEVTLST 135
            ++ DFPPLFR+ DAH++WH +TIPL   WY F++QD +HE    +
Sbjct:  266 ELFDFPPLFRVFDAHSLWHLSTIPLSIVWYKFLLQDTKHETNTKS 310
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BLAST of mRNA_Ecto-sp13_S_contig17312.5165.1 vs. uniprot
Match: A0A8H8A1R5_9FUNG (Post-GPI attachment to proteins factor 3 n=1 Tax=Olpidium bornovanus TaxID=278681 RepID=A0A8H8A1R5_9FUNG)

HSP 1 Score: 59.3 bits (142), Expect = 1.670e-10
Identity = 23/43 (53.49%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 QVNDFPPLFRLLDAHAIWHFATIPLMFHWYHFVIQDARHEVTL 129
            ++ DFPPL+  LDAHA+WH A+IP++ +WY F+++DAR E  L
Sbjct:   16 EIFDFPPLYGALDAHALWHAASIPVIPYWYRFLVRDARWESRL 58
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BLAST of mRNA_Ecto-sp13_S_contig17312.5165.1 vs. uniprot
Match: A8Q0Q1_MALGO (Post-GPI attachment to proteins factor 3 n=1 Tax=Malassezia globosa (strain ATCC MYA-4612 / CBS 7966) TaxID=425265 RepID=A8Q0Q1_MALGO)

HSP 1 Score: 63.2 bits (152), Expect = 2.320e-10
Identity = 24/38 (63.16%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 QVNDFPPLFRLLDAHAIWHFATIPLMFHWYHFVIQDAR 114
            ++ DFPPLFRLLDAHA+WH AT+PL   WY ++++DAR
Sbjct:  304 ELFDFPPLFRLLDAHALWHLATVPLTLCWYRWLLEDAR 341
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17312.5165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2L9_9PHAE8.290e-2795.74Post-GPI attachment to proteins factor 3 n=1 Tax=E... [more]
D8LDA6_ECTSI3.700e-2697.92Post-GPI attachment to proteins factor 3 n=1 Tax=E... [more]
C5KRB1_PERM52.570e-1165.85Post-GPI attachment to proteins factor 3 n=1 Tax=P... [more]
A0A3G2S352_9BASI4.880e-1159.09Post-GPI attachment to proteins factor 3 n=3 Tax=c... [more]
A0A7J6LFI9_PEROL9.010e-1154.90Post-GPI attachment to proteins factor 3 n=2 Tax=P... [more]
A0A0M8MZ65_9BASI9.100e-1161.90Post-GPI attachment to proteins factor 3 n=1 Tax=M... [more]
A0A7J6M2Z5_PEROL9.150e-1154.90Post-GPI attachment to proteins factor 3 n=3 Tax=P... [more]
S2JL11_MUCC11.430e-1051.11Post-GPI attachment to proteins factor 3 n=4 Tax=M... [more]
A0A8H8A1R5_9FUNG1.670e-1053.49Post-GPI attachment to proteins factor 3 n=1 Tax=O... [more]
A8Q0Q1_MALGO2.320e-1063.16Post-GPI attachment to proteins factor 3 n=1 Tax=M... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17312contigEcto-sp13_S_contig17312:3249..3395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score107.5
Seed ortholog evalue1.9e-21
Seed eggNOG ortholog2880.D8LDA6
Preferred namePGAP3
Model size147
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006875,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016787,GO:0016788,GO:0019538,GO:0019637,GO:0019725,GO:0030003,GO:0030026,GO:0031090,GO:0031224,GO:0031227,GO:0031984,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0046916,GO:0048878,GO:0050801,GO:0055065,GO:0055071,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0071704,GO:0090407,GO:0098588,GO:0098771,GO:0098805,GO:0098827,GO:0098852,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903509
Exons1
EggNOG free text desc.GPI anchor metabolic process
EggNOG OGsCOG5237@1,KOG2970@2759
Cds size147
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462904.4582813-CDS-Ecto-sp13_S_contig17312:3248..33951681462904.4582813-CDS-Ecto-sp13_S_contig17312:3248..3395Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17312 3249..3395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17312.5165.1prot_Ecto-sp13_S_contig17312.5165.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17312 3249..3395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17312.5165.1

>prot_Ecto-sp13_S_contig17312.5165.1 ID=prot_Ecto-sp13_S_contig17312.5165.1|Name=mRNA_Ecto-sp13_S_contig17312.5165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=49bp
QVNDFPPLFRLLDAHAIWHFATIPLMFHWYHFVIQDARHEVTLSTKET*
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mRNA from alignment at Ecto-sp13_S_contig17312:3249..3395-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17312.5165.1 ID=mRNA_Ecto-sp13_S_contig17312.5165.1|Name=mRNA_Ecto-sp13_S_contig17312.5165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17312:3249..3395- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGAACGACTTCCCCCCCCTGTTCCGCCTGCTCGACGCTCACGCTAT
CTGGCACTTCGCGACGATCCCGCTCATGTTCCACTGGTACCACTTTGTGA
TCCAGGACGCGAGACACGAGGTCACTCTGTCTACGAAAGAAACCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17312:3249..3395-

>mRNA_Ecto-sp13_S_contig17312.5165.1 ID=mRNA_Ecto-sp13_S_contig17312.5165.1|Name=mRNA_Ecto-sp13_S_contig17312.5165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17312:3249..3395- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGAACGACTTCCCCCCCCTGTTCCGCCTGCTCGACGCTCACGCTAT
CTGGCACTTCGCGACGATCCCGCTCATGTTCCACTGGTACCACTTTGTGA
TCCAGGACGCGAGACACGAGGTCACTCTGTCTACGAAAGAAACCTGA
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