mRNA_Ecto-sp13_S_contig173.5159.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig173.5159.1
Unique NamemRNA_Ecto-sp13_S_contig173.5159.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig173.5159.1 vs. uniprot
Match: D7G8H6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8H6_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 1.120e-68
Identity = 115/120 (95.83%), Postives = 115/120 (95.83%), Query Frame = 2 
Query:  500 VFAATDVVPAIKGQAPRPRGQFERVLQGASFAAATGFAGASSVLAEYIDPDDVGEVVSSDLPPMWVPLAVGFVLTLGIGLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKKDPK 859
            VF ATDVVPA KGQAPRPRGQFER LQGASF AATGFAGASSVLAEYIDPDDVGEVVSSDLPPMWVPLAVGFVLTLGIGLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKKD K
Sbjct:   51 VFDATDVVPASKGQAPRPRGQFERALQGASFTAATGFAGASSVLAEYIDPDDVGEVVSSDLPPMWVPLAVGFVLTLGIGLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKKDQK 170
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BLAST of mRNA_Ecto-sp13_S_contig173.5159.1 vs. uniprot
Match: A0A836CD09_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD09_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 3.650e-20
Identity = 53/93 (56.99%), Postives = 65/93 (69.89%), Query Frame = 2 
Query:  575 LQGASFAAATG-FAGASSVLAEYIDPDDVGEVVSSDLPPMWVPLAVGFVLTLGIGLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKK 850
            L GA+  AA G  A A + +A  +D + V   +  +LPPMWVPL +G V+  GIG  Q SLG+VM+DEAKLG LSGARAAKQSAR R MFK+K
Sbjct:   14 LPGAAATAAFGALASAQAAIAVVVDEEQVVTSMRDELPPMWVPLVLGAVVLAGIGAQQLSLGNVMDDEAKLGGLSGARAAKQSARGRSMFKRK 106
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BLAST of mRNA_Ecto-sp13_S_contig173.5159.1 vs. uniprot
Match: A0A7S3Y243_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y243_HETAK)

HSP 1 Score: 77.0 bits (188), Expect = 5.850e-12
Identity = 38/64 (59.38%), Postives = 46/64 (71.88%), Query Frame = 2 
Query:  635 EYIDPDDVGEVVSSDLPPMWVPLAVGFVLTLGIGLLQGSLGDVMNDEAKLGALSGARAAKQSAR 826
            + +D    GEV   +LPPMWVPLA G VL +GIG+LQ SLGDVM  EA LG+ SGARA K++ R
Sbjct:  449 DTVDDPTSGEVAKEELPPMWVPLATGAVLFVGIGVLQASLGDVMEAEAGLGSASGARARKENTR 512
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BLAST of mRNA_Ecto-sp13_S_contig173.5159.1 vs. uniprot
Match: A0A6U1XMR7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A6U1XMR7_TRICV)

HSP 1 Score: 72.4 bits (176), Expect = 8.080e-12
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 2 
Query:  617 ASSVLAEYIDPD----DVGEVVSSDLPPMWVPLAVGFVLTLGIGLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKK 850
            AS   A ++ P     D+ ++  ++LPP+WVP+     +  G+GLL GSLGDVM+DEA LG +SGA+A K+  R R  + KK
Sbjct:   72 ASMAFASFVMPALAEVDLDDIEIAELPPVWVPIVFAIAILGGVGLLTGSLGDVMSDEASLGLMSGAQAKKEMERSRSSYFKK 153
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BLAST of mRNA_Ecto-sp13_S_contig173.5159.1 vs. uniprot
Match: A0A7S3PV07_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PV07_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 3.410e-10
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 2 
Query:  674 SDLPPMWVPLAVGFVLTLGIGLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKK 850
            ++LPP+WVP+    V+  G+GLL  SLGDVMN+EA LG +SGA+A K+  R R  + KK
Sbjct:   78 AELPPVWVPILFAIVIIGGVGLLTFSLGDVMNEEASLGLMSGAKAKKEKERSRSSYFKK 136
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BLAST of mRNA_Ecto-sp13_S_contig173.5159.1 vs. uniprot
Match: A0A7R9ZRN9_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZRN9_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.330e-9
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 2 
Query:  674 SDLPPMWVPLAVGFVLTLGIGLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKK 850
            ++LPP+WVP     VL +G+GLL GSLG+V+++E+ LG  SGARA K+  R R  + KK
Sbjct:   65 AELPPVWVPAVFALVLLVGVGLLTGSLGNVIDEESMLGLQSGARAKKEIERSRSSYFKK 123
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BLAST of mRNA_Ecto-sp13_S_contig173.5159.1 vs. uniprot
Match: A0A7S2V989_9STRA (Hypothetical protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2V989_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.980e-8
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 2 
Query:  662 EVVSSDLPPMWVPLAVGFVLTLGIGLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKK 850
            +V  ++LPP +VP   G  L +G+GLL GSLG+VM++EA LG  SGARA K+  R R  + KK
Sbjct:   86 DVQFAELPPPYVPALFGVGLLVGVGLLTGSLGNVMDEEASLGMQSGARAKKEIERSRSSYFKK 148
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BLAST of mRNA_Ecto-sp13_S_contig173.5159.1 vs. uniprot
Match: A0A7S2XRK3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XRK3_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.960e-8
Identity = 32/82 (39.02%), Postives = 47/82 (57.32%), Query Frame = 2 
Query:  605 GFAGASSVLAEYIDPDDVGEVVSSDLPPMWVPLAVGFVLTLGIGLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKK 850
            GF     ++   +  +  GE+   +LPP +  +     +  G+GLL GSLGDVM +EA+LG +SGARA K+  R R  + KK
Sbjct:   87 GFVTGGMMVGAALAEEASGEIEIEELPPPYFAVVFAIAILGGVGLLTGSLGDVMTEEAQLGMMSGARAKKEKERSRSSYFKK 168
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BLAST of mRNA_Ecto-sp13_S_contig173.5159.1 vs. uniprot
Match: A0A6U1Q394_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1Q394_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 3.350e-8
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 2 
Query:  680 LPPMWVPLAVGFVLTLGIGLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMF 841
            LPP WVP+ V   L  G+GLLQ SLG+V +DEA LG+ SGARA K+S R++   
Sbjct:   89 LPPFWVPVGVAIALLGGVGLLQLSLGNVADDEAMLGSASGARARKESTRNKKFL 142
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BLAST of mRNA_Ecto-sp13_S_contig173.5159.1 vs. uniprot
Match: A0A7S2SFC9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SFC9_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.160e-6
Identity = 31/59 (52.54%), Postives = 38/59 (64.41%), Query Frame = 2 
Query:  677 DLPPMWVPLAVGFVLTLGIGLLQGSLGDVMNDEAKLGALSGARAAKQSAR-DRDMFKKK 850
            DLPP  +P+A    + +G+GLLQGSLGDV   EA LG  SGA A K++ R  R  FK K
Sbjct:   86 DLPPPAIPVAFAAAIFVGVGLLQGSLGDVYGQEADLGMSSGANARKEAERKSRSYFKDK 144
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig173.5159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7G8H6_ECTSI1.120e-6895.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CD09_9STRA3.650e-2056.99Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3Y243_HETAK5.850e-1259.38Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U1XMR7_TRICV8.080e-1243.90Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S3PV07_9STRA3.410e-1052.54Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7R9ZRN9_9STRA2.330e-950.85Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2V989_9STRA1.980e-850.79Hypothetical protein n=2 Tax=Amphiprora paludosa T... [more]
A0A7S2XRK3_9STRA2.960e-839.02Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A6U1Q394_9STRA3.350e-855.56Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2SFC9_9STRA1.160e-652.54Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig173contigEcto-sp13_S_contig173:20067..22291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size975
Hectar predicted targeting categoryother localisation
Exons3
Cds size519
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462903.6052172-UTR-Ecto-sp13_S_contig173:20066..203861681462903.6052172-UTR-Ecto-sp13_S_contig173:20066..20386Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig173 20067..20386 -
1681462903.615857-UTR-Ecto-sp13_S_contig173:20791..208011681462903.615857-UTR-Ecto-sp13_S_contig173:20791..20801Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig173 20792..20801 -
1681462903.6483133-UTR-Ecto-sp13_S_contig173:22165..222911681462903.6483133-UTR-Ecto-sp13_S_contig173:22165..22291Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig173 22166..22291 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462903.6269143-CDS-Ecto-sp13_S_contig173:20801..209471681462903.6269143-CDS-Ecto-sp13_S_contig173:20801..20947Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig173 20802..20947 -
1681462903.6380858-CDS-Ecto-sp13_S_contig173:21792..221651681462903.6380858-CDS-Ecto-sp13_S_contig173:21792..22165Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig173 21793..22165 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig173.5159.1prot_Ecto-sp13_S_contig173.5159.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig173 20802..22165 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig173.5159.1

>prot_Ecto-sp13_S_contig173.5159.1 ID=prot_Ecto-sp13_S_contig173.5159.1|Name=mRNA_Ecto-sp13_S_contig173.5159.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=173bp
MSTPIENLSHEILEDPHVEDGDGAHMSTPGAESGRIVAYNVATFGRSQTT
VIYRRRDPQRGCVCPSALPRPREFPATHPPKDKKQKLGRQFNDAGSVSRS
ERDSYLAYVPHVRTCRMLSRRNCAGLRRDGRCSCYQRAGAAATRAIRKGA
ARGVVRGSNRVCGSVQCASRVH*
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mRNA from alignment at Ecto-sp13_S_contig173:20067..22291-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig173.5159.1 ID=mRNA_Ecto-sp13_S_contig173.5159.1|Name=mRNA_Ecto-sp13_S_contig173.5159.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig173:20067..22291- (Ectocarpus species13 EcNAP12_S_4_19m)
GCATGCGTTGTCAGTCATTGAGAACGTGGCGACGGTGTTCACATTTTGAG
GTCTCTAGGGTGGACGTGTGAACACCGCCGCCATCCTGGACAATACGCGC
ATGCCGAGGATGGCGACGGTGTTCACATGTCCACCCCAATTGAGAACTTA
TCCCACGAGATACTCGAAGATCCGCACGTCGAGGATGGCGACGGTGCTCA
CATGTCAACCCCAGGGGCGGAGAGTGGTCGGATTGTAGCCTACAACGTTG
CCACCTTCGGTAGGTCGCAGACGACGGTAATCTACAGGCGTCGGGATCCT
CAACGCGGGTGTGTGTGTCCTTCCGCCCTTCCGCGGCCACGAGAATTCCC
CGCCACACATCCGCCAAAAGACAAGAAACAAAAATTGGGCCGGCAATTCA
ACGATGCCGGATCGGTCTCGCGTTCTGAGCGTGACTCGTATCTCGCATAC
GTTCCTCACGTTCGTACGTGTCGGATGCTCTCCCGACGAAATTGTGCTGG
TATGCCAGCCGTCATTTGTGGAGAGCGGGAACAGTTGATGGTTGTGTTGT
TTTGCGGGGGTGGAACATCCGTCGTGATCGCATTCTGCCCGGTTCACATG
CGTTGATTTCGAGCGAGAAGAGTTGGTGTTTGGTATCTCAATGTTGGAAG
GGAAAAGGATTCCTGCAGAGAAAATGGTCAATGAAAGGCTCGCATTTCCC
GTCAGGCCAGGGTACATTTCTGGAGAAAAGTAGCCGTGGCAGGGTGTACC
TCTCGATTTTTAGGATACGGCGGGGTGAAAGTGGACGTCGATCAAAATAG
CTGAGCTCGTTTGACACTGCGAGGGTATGTACCCAGCTGAGTCGTTTAGC
CATGATATACCGGTCGCGGGCTACAAGTGTGTGTGTGCTCGCGGGGAGCG
ACCAAAAGAGAAAGCAAGCACACCTGCGGTCGTGGTTCCGACAAAATGAC
AAGAGTGAAGAGTGTCGTGAAACGGAGCAAGGACAAGCAGGTCGCGCTCT
GGACACGCACACGTGTGTAGAGAGGGTTCTAAGTGCCGCTGTAGGTCGGT
GTTGTGTAGCAGGGTGTGGGTAGGTGTGGGTGTTGTGTCTCTCTCTCCGC
TGTTCCACTCCTCCGCTACGGCTGTATATTTTTCTATGGCACAAAACGTA
TTTTCGCAGCGAATAGGGCGCGCACACACATGGCTCTCATCTGTCTCCTC
GTTTACCAGCTGCCCGGGTGTGCAGCGGTCGGAGAGGTCAGCAGCCTCTA
GTGTGACTGCTGTATTTCACTCGATCCATCTCTCGCGTGAAACACAATCA
AACCACATGCACACAACTCTGTTGTCGCACCCGTTCATGTCCAGGTCTTC
GCCGCGACGGACGTTGTTCCTGCTATCAAAGGGCAGGCGCCGCGGCCACG
AGGGCAATTCGAAAGGGTGCTGCAAGGGGCGTCGTTCGCGGCAGCAACAG
GGTTTGCGGGAGCGTCCAGTGTGCTAGCAGAGTACATTGATCCCGACGAT
GTGAGATGCCACTTTCTTATCGCCGAGAGAACACAGGCCGATCGATTGCA
ATGGTCCTTGTTTTTTTGTCCATTGTAACAGCTGTCAACTTGTCAATGAG
ATCAGCAGTACTTGGAATACTAAGCGGCGGGGAGTAGGTTGGAGCGCGCA
AGCATTTCGTTGCCCCTCTATCCAGCAGGTCTGCAGCGCAATTCATAGGT
TCGCAAATACTCGGGAGTCAAAGCTCTTTTCTAGCTCCGAGGACCAACTA
CACACGCCCGCCTCAAGCAGCGTGGCGCCTCCCTCTCAAGCGTGTAAATC
TTGCCGGCGAAGTACGACCGCAAGATTGGACACCTAGTGCGGCGACTTGT
GCCTAACTACCAATCGTTTCGATGCATGCGTACCCAAAACATGTACGTGT
GACAGGTCGGTGAAGTCGTCAGTAGCGACCTTCCGCCGATGTGGGTGCCG
CTCGCAGTCGGCTTCGTTCTCACGCTAGGCATCGGCCTGCTTCAGGGGAG
CCTGGGGGACGTTATGAATGACGAGGCCAAGCTCGGGGCATTGTCAGGCG
CAAGAGCTGCCAAGCAAAGTGCCCGCGACCGAGACATGTTCAAGAAGAAA
GACCCAAAATAGTCGGCATTGAGCCTACATGGTGGGGGAAGAGATGAGTA
GATAAACTGGAACGGTTAATATGGGGGCATGGGGGCCGTGCTTGTTAACC
CTCTTGTGTATTTTGGATGTGTTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig173:20067..22291-

>mRNA_Ecto-sp13_S_contig173.5159.1 ID=mRNA_Ecto-sp13_S_contig173.5159.1|Name=mRNA_Ecto-sp13_S_contig173.5159.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig173:20067..22291- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCACCCCAATTGAGAACTTATCCCACGAGATACTCGAAGATCCGCA
CGTCGAGGATGGCGACGGTGCTCACATGTCAACCCCAGGGGCGGAGAGTG
GTCGGATTGTAGCCTACAACGTTGCCACCTTCGGTAGGTCGCAGACGACG
GTAATCTACAGGCGTCGGGATCCTCAACGCGGGTGTGTGTGTCCTTCCGC
CCTTCCGCGGCCACGAGAATTCCCCGCCACACATCCGCCAAAAGACAAGA
AACAAAAATTGGGCCGGCAATTCAACGATGCCGGATCGGTCTCGCGTTCT
GAGCGTGACTCGTATCTCGCATACGTTCCTCACGTTCGTACGTGTCGGAT
GCTCTCCCGACGAAATTGTGCTGGTCTTCGCCGCGACGGACGTTGTTCCT
GCTATCAAAGGGCAGGCGCCGCGGCCACGAGGGCAATTCGAAAGGGTGCT
GCAAGGGGCGTCGTTCGCGGCAGCAACAGGGTTTGCGGGAGCGTCCAGTG
TGCTAGCAGAGTACATTGA
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