mRNA_Ecto-sp13_S_contig17280.5150.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17280.5150.1
Unique NamemRNA_Ecto-sp13_S_contig17280.5150.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17280.5150.1 vs. uniprot
Match: A0A6H5KTW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTW3_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 1.860e-46
Identity = 104/132 (78.79%), Postives = 110/132 (83.33%), Query Frame = 2 
Query:    5 AQARTFSLEQQDSRDTIAFTTNDETSNTNHLAGTGAARAITVSQVLDLRHGATSTATRQGGDGGSRSRRGGRDRRDERMSTSRDTGVQATRVGGDDVGKAAAVEVVVGVLSFESLREGDVAVSSLFLKDETG 400
            AQ++TF+LEQ+DSRDTI   T+DETSNT+HL GTGAAR ITVSQVLDLRHGATSTATRQGGDG              R STSRDTGVQATRV GDD GKAAAVEVVVGVLSFESLREGDVAVSSLFLKDETG
Sbjct:  139 AQSKTFTLEQRDSRDTIILVTDDETSNTSHLVGTGAARTITVSQVLDLRHGATSTATRQGGDGXXXXXXXXXX---XRTSTSRDTGVQATRVDGDDEGKAAAVEVVVGVLSFESLREGDVAVSSLFLKDETG 267
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17280.5150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KTW3_9PHAE1.860e-4678.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17280contigEcto-sp13_S_contig17280:1887..3004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size792
Hectar predicted targeting categoryother localisation
Exons2
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462903.087033-UTR-Ecto-sp13_S_contig17280:1886..21241681462903.087033-UTR-Ecto-sp13_S_contig17280:1886..2124Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17280 1887..2124 +
1681462903.118519-UTR-Ecto-sp13_S_contig17280:2813..30041681462903.118519-UTR-Ecto-sp13_S_contig17280:2813..3004Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17280 2814..3004 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462903.0997424-CDS-Ecto-sp13_S_contig17280:2124..22841681462903.0997424-CDS-Ecto-sp13_S_contig17280:2124..2284Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17280 2125..2284 +
1681462903.10952-CDS-Ecto-sp13_S_contig17280:2610..28131681462903.10952-CDS-Ecto-sp13_S_contig17280:2610..2813Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17280 2611..2813 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17280.5150.1prot_Ecto-sp13_S_contig17280.5150.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17280 2125..2813 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17280.5150.1

>prot_Ecto-sp13_S_contig17280.5150.1 ID=prot_Ecto-sp13_S_contig17280.5150.1|Name=mRNA_Ecto-sp13_S_contig17280.5150.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
MSTSRDTGVQATRVGGDDVGKAAAVEVVVGVLSFESLREGDVAVSSLFLK
DETGRVRLVCAPPPPPSWLGQVVCLTRWTLTTDKTPTAGKRKRQVECCCR
CRCRCRNVHSRQGCQIVVDG*
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mRNA from alignment at Ecto-sp13_S_contig17280:1887..3004+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17280.5150.1 ID=mRNA_Ecto-sp13_S_contig17280.5150.1|Name=mRNA_Ecto-sp13_S_contig17280.5150.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1118bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17280:1887..3004+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTAGCGCAAGCCAGAACCTTTTCGCTAGAGCAACAAGACTCCCGCGACA
CTATCGCCTTCACCACAAATGACGAGACCAGCAACACAAACCACCTAGCC
GGGACCGGGGCCGCAAGAGCTATCACCGTATCCCAGGTGCTCGACCTCCG
GCACGGGGCGACATCAACGGCCACACGGCAGGGTGGTGACGGCGGTAGCC
GGTCTCGACGAGGTGGACGAGATAGACGAGATGAACGGATGTCGACGTCA
CGAGATACGGGAGTCCAGGCCACTAGAGTGGGCGGGGATGATGTGGGGAA
AGCGGCAGCAGTGGAGGTGGTGGTCGGAGTGCTGTCGTTTGAGTCGCTGA
GAGAGGGGGACGTGGCGGTGTCTTCGCTGTTTCTTAAGGACGAAACCGGT
AAGCATACTCGATCGCAACAACACAACGATAACGAACGTCGTCAGGATCT
TTACTGCGATCTAAACGCGCTTCCACCCCTAGTTTGTAGACACCGTTCGT
GAGACATGAGTAGGTGGGGAACACAATGTGTACCTCCGTGAAGCAACATA
CAAAAACCGGAGTCGTCAACCTCGCCTTGGTGAAAAGGACATTAGTCTTG
GTGGAAAGGGGACGAGGTCTTCATTCGTTTTCATTACACGAAGGTCTGCC
AACGGCGTTGGATGTAAACCCACATCACGGCACGCTCATGTACTGACGGT
GTGGATGCACTCGTTTGTTCCCAGGGAGAGTGCGGCTGGTTTGCGCGCCA
CCGCCACCGCCGAGCTGGTTGGGTCAGGTTGTCTGCCTGACACGGTGGAC
GCTGACCACGGACAAGACGCCCACCGCTGGTAAGAGGAAGAGACAGGTAG
AGTGCTGCTGTCGGTGTCGGTGTCGTTGTCGTAACGTACATAGTCGGCAG
GGGTGCCAGATTGTGGTTGATGGCTGATGGCTGATACGTGAGCGACGTAC
AAGGAGGACATGCTTGTTGCGATGTTCGAAGAGAGTGTGGGGGATTCAAG
AGATGACCAATTGGCACGTGTCCAGTGTGATTCTCGTGATAAATCAGCTC
CACGCTCAAGAGTTCTCGACCAGCAGTGACACGTATATGAGGGGTGCTGG
GTTATCTATATGAGGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17280:1887..3004+

>mRNA_Ecto-sp13_S_contig17280.5150.1 ID=mRNA_Ecto-sp13_S_contig17280.5150.1|Name=mRNA_Ecto-sp13_S_contig17280.5150.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17280:1887..3004+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGACGTCACGAGATACGGGAGTCCAGGCCACTAGAGTGGGCGGGGA
TGATGTGGGGAAAGCGGCAGCAGTGGAGGTGGTGGTCGGAGTGCTGTCGT
TTGAGTCGCTGAGAGAGGGGGACGTGGCGGTGTCTTCGCTGTTTCTTAAG
GACGAAACCGGGAGAGTGCGGCTGGTTTGCGCGCCACCGCCACCGCCGAG
CTGGTTGGGTCAGGTTGTCTGCCTGACACGGTGGACGCTGACCACGGACA
AGACGCCCACCGCTGGTAAGAGGAAGAGACAGGTAGAGTGCTGCTGTCGG
TGTCGGTGTCGTTGTCGTAACGTACATAGTCGGCAGGGGTGCCAGATTGT
GGTTGATGGCTGA
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