mRNA_Ecto-sp13_S_contig1728.5149.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1728.5149.1
Unique NamemRNA_Ecto-sp13_S_contig1728.5149.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1728.5149.1 vs. uniprot
Match: A0A6H5LJI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJI1_9PHAE)

HSP 1 Score: 484 bits (1247), Expect = 5.560e-166
Identity = 242/293 (82.59%), Postives = 254/293 (86.69%), Query Frame = 1 
Query:    1 MAMSTTRKRGAFFVFEKPLVSRLPFEVEVDAGGLAKKRARIAXXXXXXXXXXXXXXAHEDLDVNTSENVETQQWWTREALQERHRGEEADSSSSSSPIAPVGADVERGCSLGGSWSATEGR-RGTRGGTRQSLERVEPECLEKEALSTATTRGAGPGRTLVQLKIDAMFAVPGLPCTPPSECSGRNPDAKICDGDCAGTTSRGDGSMDVDVGVGAEPREEGGPACYACRGALGTAGGDILCSFCDRAACQACWQRCSTCGVPHCSLCLAADYNSQFECYFCPPCYQDERLESC 876
            MAMSTTRKRGAF+VFEKPLVSRLPFE EVDAGGLA+KR RIA              AHEDLDVNTSENVETQ WWTREALQERHRGEEADS SSSS IAPVGADV RGC LGG W A EG  R TRGGTR S+ERVEPEC +K+A+STA T GAGPGRTLVQLKIDAMFAVPGLPCTPPSECSGR  +A++CDG+CA TT RGDG+MDVDVGVGAEP EEGGPACYACRGALGTAGGDILCSFCDRAACQACWQRCS CGVPHCSLCLAADYNSQFECYFCP CYQD+RLE C
Sbjct:    1 MAMSTTRKRGAFYVFEKPLVSRLPFEAEVDAGGLARKRVRIAATTTTETTRPPSPPAHEDLDVNTSENVETQHWWTREALQERHRGEEADSCSSSSAIAPVGADVGRGCWLGGRWGAREGSGRDTRGGTRPSMERVEPECPDKQAVSTAATGGAGPGRTLVQLKIDAMFAVPGLPCTPPSECSGRIANAELCDGECARTTCRGDGAMDVDVGVGAEPGEEGGPACYACRGALGTAGGDILCSFCDRAACQACWQRCSACGVPHCSLCLAADYNSQFECYFCPSCYQDKRLECC 293
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BLAST of mRNA_Ecto-sp13_S_contig1728.5149.1 vs. uniprot
Match: D7G7W2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W2_ECTSI)

HSP 1 Score: 476 bits (1224), Expect = 1.620e-162
Identity = 247/292 (84.59%), Postives = 256/292 (87.67%), Query Frame = 1 
Query:    1 MAMSTTRKRGAFFVFEKPLVSRLPFEVEVDAGGLAKKRARIAXXXXXXXXXXXXXXAHEDLDVNTSENVETQQWWTREALQERHRGEEADSSSSSSPIAPVGADVERGCSLGGSWSATEGRRGTRGGTRQSLERVEPECLEKEALSTATTRGAGPGRTLVQLKIDAMFAVPGLPCTPPSECSGRNPDAKICDGDCAGTTSRGDGSMDVDVGVGAEPREEGGPACYACRGALGTAGGDILCSFCDRAACQACWQRCSTCGVPHCSLCLAADYNSQFECYFCPPCYQDERLESC 876
            MAMSTTRKRGAFFVFEKPLVSRLPFEVEVD G LAKKRARIA  XXXXXXXXX   AHEDLDVNTSEN ET+QWWTREALQERHR            IA VGADVERGC  GG W A EGRR TR GTR SLE+ E ECL++EA+STA T GAG GRTLVQLKIDAMFAVPGLPCTPPSECSGRNPDA++CDG+CAGTTSRGDG+MDVDVGVGAEPREEGGPACYACRGALGTAGGDILCSFCDRAACQACWQRCS C VPHCSLCLAADYNSQFECYFCPPCYQDERLESC
Sbjct:    1 MAMSTTRKRGAFFVFEKPLVSRLPFEVEVDGGVLAKKRARIAATXXXXXXXXXSPPAHEDLDVNTSENFETKQWWTREALQERHRXXXXXXXXXXXAIAAVGADVERGCWSGGIWGAREGRRDTRAGTRPSLEKGERECLDEEAVSTAATGGAGAGRTLVQLKIDAMFAVPGLPCTPPSECSGRNPDAELCDGECAGTTSRGDGAMDVDVGVGAEPREEGGPACYACRGALGTAGGDILCSFCDRAACQACWQRCSACEVPHCSLCLAADYNSQFECYFCPPCYQDERLESC 292
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1728.5149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LJI1_9PHAE5.560e-16682.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7W2_ECTSI1.620e-16284.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1728contigEcto-sp13_S_contig1728:11759..15062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1903
Hectar predicted targeting categoryother localisation
Exons2
Cds size879
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462903.0365632-UTR-Ecto-sp13_S_contig1728:11758..127821681462903.0365632-UTR-Ecto-sp13_S_contig1728:11758..12782Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1728 11759..12782 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462903.0464265-CDS-Ecto-sp13_S_contig1728:12782..132011681462903.0464265-CDS-Ecto-sp13_S_contig1728:12782..13201Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1728 12783..13201 -
1681462903.056847-CDS-Ecto-sp13_S_contig1728:14602..150621681462903.056847-CDS-Ecto-sp13_S_contig1728:14602..15062Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1728 14603..15062 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1728.5149.1prot_Ecto-sp13_S_contig1728.5149.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1728 12783..15062 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1728.5149.1

>prot_Ecto-sp13_S_contig1728.5149.1 ID=prot_Ecto-sp13_S_contig1728.5149.1|Name=mRNA_Ecto-sp13_S_contig1728.5149.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=293bp
MAMSTTRKRGAFFVFEKPLVSRLPFEVEVDAGGLAKKRARIAATTTTEST
RPPPPPAHEDLDVNTSENVETQQWWTREALQERHRGEEADSSSSSSPIAP
VGADVERGCSLGGSWSATEGRRGTRGGTRQSLERVEPECLEKEALSTATT
RGAGPGRTLVQLKIDAMFAVPGLPCTPPSECSGRNPDAKICDGDCAGTTS
RGDGSMDVDVGVGAEPREEGGPACYACRGALGTAGGDILCSFCDRAACQA
CWQRCSTCGVPHCSLCLAADYNSQFECYFCPPCYQDERLESC*
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mRNA from alignment at Ecto-sp13_S_contig1728:11759..15062-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1728.5149.1 ID=mRNA_Ecto-sp13_S_contig1728.5149.1|Name=mRNA_Ecto-sp13_S_contig1728.5149.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3304bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1728:11759..15062- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCATGAGCACCACGAGGAAGCGAGGAGCCTTCTTTGTTTTCGAGAA
GCCGCTCGTTTCCCGGCTCCCTTTCGAGGTCGAAGTGGACGCGGGCGGCC
TTGCGAAAAAGAGAGCGAGGATCGCGGCAACAACAACAACCGAATCAACA
AGACCACCACCACCCCCAGCCCATGAAGACCTGGATGTCAACACGAGCGA
GAATGTCGAGACACAGCAGTGGTGGACGAGAGAGGCACTGCAAGAACGGC
ATCGCGGAGAGGAGGCCGATAGCTCCTCTTCAAGTAGTCCCATCGCTCCT
GTAGGTGCGGATGTTGAGCGGGGCTGCTCCTTGGGCGGCAGCTGGAGCGC
AACGGAAGGCCGCAGGGGTACAAGAGGAGGAACGAGGCAGTCTTTGGAGA
GGGTTGAACCCGAGTGCCTGGAGAAGGAGGCTCTATCTACCGCGACAACT
CGTGGAGCAGGTAAGCTCTGACCATTTTTCTGGCGGTAACGCCCAGCGGT
ACGCCCAGCGGTTCGGACCGCCGCGTTGTTCAAAAATCGAAAAGAAATGC
TATGAAATTTTTCAGTTTTCCGTCGCTCCCTGCTCACGCGCACTGCACCC
ACAAAACCCCGATTACAACTATTAAAAATAGCTTGAAATACGCGCCGTGG
TCTTGTCATTTTATTTCGGAGCGCGCCGATACCGGATTGAGAAGGTGTCA
ACCTCTCACGAGTCATGGTTTTTGCTCCCAAGAGGAAGGCCGCTGTTGGA
CACTGGGAGGTTTCGTACTTGTGTTTTGCACCTGCGGTTCCCTGTGGCAT
GGTGTTGAGTGTTGGAAATGGCCGTCCCGGAGTACCGCAACCTGGTTGCA
CGGATGAAGCACTTTGAGGATGAATAGGGGGGCGAGCGATTCCCCGCTGG
ACAACTTTCGCACGTGCAGATTTTTCCTTCGATGCCCTAGAATTTTGTTG
TCAGTCCATTTTTTCTGGTTAGCTGCTGCGAGGGAGGCCAGCATTCGTGC
AGCGGCTTGCGTCGGCCATCTTATTATGCATATAAGCCCTCCCGGTCGCT
CAGGATCCGCTCCTCGAGTCTCGCGCTGTCGCTCGTCCAACTTGGAAGTA
TACTTGGAAAAATAAATGCACACACAGAAATACTACCCATTCGAGATATA
CCCACAGTCGAACGGGATGTGGTGGAGTCTTTTCAGTGAGTGGAGGAAAA
TCGGCTGGGTACTGGACTTATTTCGAGTCTTCTTGTCCTTTACACTGATG
ATTTAAATCAAGCACTGCTGCAGCGTTTTTTCATCTCGTTGTATCCATAC
ATACGTGTGCCTGTTGAATACATACTGTCTCAGCCGTTATGCTGACGCTA
CGATGCAAAGAACAGCTGCATCGCATCGGCCGTGATGACGGATTTGACTC
ACCAAGCTTGGAGCTCCTCGTTCTCGAGGATTCTTGGGCGAAAATCTTAC
GTCGTCTAGGTGACAGTAGTATACTGTAGTACAGTAAGTAGGGCTCAACA
ATGTGTCGAATTACGTCCCGGTGCGGTCTCAAAGCGCTTTGCCTTGCCGG
TATCTGCTGATAAAATCCAACCCAAAATGCTGAAAAGCTTGACGAGTATT
TGGCGTCTTGATGCGGCACCGACCTCCTGCAGTCGGTGTGTCCATGCCTC
TCTACCTCGAAATCCTTCTCCTGTGTCGGGTGTCGAGTTTGGCTTGTGCC
GTTCGAGGGATCGTTTTCCCATACCATTTGACATATTGAACACTGCTCTC
TTGTTCCAAACAAGAGTAACGCTATCCTACTTTCGACGCCCGTTTTCTCG
TTCGACACTCTAACCACGAAACCAAATTCACCGTGGTGCTTCCTCCTTTC
ATCCGGCACAGGCCCGGGGCGAACGCTGGTCCAGCTCAAAATCGACGCCA
TGTTTGCTGTACCAGGACTGCCGTGCACGCCTCCATCAGAGTGTTCTGGT
CGAAACCCCGATGCAAAAATCTGCGATGGGGATTGTGCCGGAACTACGAG
CAGAGGAGATGGTTCAATGGATGTTGACGTGGGTGTAGGAGCGGAACCTC
GGGAAGAGGGTGGGCCTGCCTGCTACGCTTGCAGAGGCGCGCTAGGAACG
GCGGGCGGGGACATTTTGTGTTCTTTTTGTGATCGTGCTGCGTGCCAAGC
ATGCTGGCAGAGGTGCTCCACTTGCGGAGTGCCCCACTGTAGTCTGTGCT
TAGCGGCAGATTACAACTCGCAGTTTGAGTGCTACTTCTGCCCGCCATGT
TATCAGGATGAGAGACTCGAATCTTGCTAGGAACATGTTTGATAGGACAG
GCGTGAGTGCAACGTCTGTAAGAAGGGTGGGTCTGGAGGGCAAGCGTATG
CACGTCTGCTCTGTGGGATGACGTATGCCCATCACCCCACGTGCAGCACA
AAGCTTGGAGCGTTTTCGAGCGTGATTGGGGCTGGTTCATGTGCCCAACG
GACTGGTGGCTTTGCCGATCGTTATTCTTGCCCTTTCCCCAGAAAATGTG
TGGTTATCGAAGCTGGCGCGTTGCTGAAGGTGTTTGGTGGTCGTTCGCGA
GGGTAGAATGTGCGGAAATCGTTGGCAGCAACTATAGACTAGTCTGAGGC
GGAGAACATGTCGTAAACAGCCAAGCGTTCGCCAACCGTTTTGACGCGTT
CATACCCTGTAAGCTGGTTGTTGCAGAGAACAGGCGACTGCAGCTTGCTC
AGGGCTCCTAGCTCCTTGGGGACACAGTCTACGTAAATAGCACCGCAATA
GTGAGACACGGTTGTTTTGTGTACGGAGACTGCAGGTTTCGAGAACATGT
ACACGGGCTACTCACCGGAGCGTGGGTGACTAGCCCGTTTACATGTCCTG
GAAATCTGCCAATCTCCGTGACACCAATATTACCTTGTCTTTTTCCTGCT
TTGCTGTTTTCGGAGGCCGCATGTCCAAGGCGCTAGTAGCTCTAAGCATG
CTGCACGCGCTTTCTTTCGGCACCAATAAGTTGTCAGGTTCGGAATTTGG
TGAAAGGGTTTTCATGCTGTGATGTTTTAGCACACCTAGGTTGCCTCCAC
AAGCTGTAACTTGCATGCTTGAGATTGATGTTAGAAAATACAAAAACAGA
GAGATGATCCTCACAGCTTGAGTCAGCGCTTTTCAGTTGTACCACGGTTT
ATCCGATTTTAACCGAGATGAGTACTGTAAGTTTAGGTTCCTCCTGGTGG
TGTCCTGCGGATATAAACGACTTGGTAAGCATGCCGCATCATTCTATCGT
CAACAAAAATGCCTTCGGTTCAACGAGAGTTGCTTTCCATGAAAACCACT
GCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1728:11759..15062-

>mRNA_Ecto-sp13_S_contig1728.5149.1 ID=mRNA_Ecto-sp13_S_contig1728.5149.1|Name=mRNA_Ecto-sp13_S_contig1728.5149.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=879bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1728:11759..15062- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCATGAGCACCACGAGGAAGCGAGGAGCCTTCTTTGTTTTCGAGAA
GCCGCTCGTTTCCCGGCTCCCTTTCGAGGTCGAAGTGGACGCGGGCGGCC
TTGCGAAAAAGAGAGCGAGGATCGCGGCAACAACAACAACCGAATCAACA
AGACCACCACCACCCCCAGCCCATGAAGACCTGGATGTCAACACGAGCGA
GAATGTCGAGACACAGCAGTGGTGGACGAGAGAGGCACTGCAAGAACGGC
ATCGCGGAGAGGAGGCCGATAGCTCCTCTTCAAGTAGTCCCATCGCTCCT
GTAGGTGCGGATGTTGAGCGGGGCTGCTCCTTGGGCGGCAGCTGGAGCGC
AACGGAAGGCCGCAGGGGTACAAGAGGAGGAACGAGGCAGTCTTTGGAGA
GGGTTGAACCCGAGTGCCTGGAGAAGGAGGCTCTATCTACCGCGACAACT
CGTGGAGCAGGCCCGGGGCGAACGCTGGTCCAGCTCAAAATCGACGCCAT
GTTTGCTGTACCAGGACTGCCGTGCACGCCTCCATCAGAGTGTTCTGGTC
GAAACCCCGATGCAAAAATCTGCGATGGGGATTGTGCCGGAACTACGAGC
AGAGGAGATGGTTCAATGGATGTTGACGTGGGTGTAGGAGCGGAACCTCG
GGAAGAGGGTGGGCCTGCCTGCTACGCTTGCAGAGGCGCGCTAGGAACGG
CGGGCGGGGACATTTTGTGTTCTTTTTGTGATCGTGCTGCGTGCCAAGCA
TGCTGGCAGAGGTGCTCCACTTGCGGAGTGCCCCACTGTAGTCTGTGCTT
AGCGGCAGATTACAACTCGCAGTTTGAGTGCTACTTCTGCCCGCCATGTT
ATCAGGATGAGAGACTCGAATCTTGCTAG
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